Wall clock time and date at job start Mon Mar 30 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47506 * 2 1 4 4 C 1.53006 * 109.47013 * 119.99474 * 2 1 3 5 5 C 1.52996 * 109.47333 * 174.99684 * 4 2 1 6 6 N 1.46497 * 109.47242 * 180.02562 * 5 4 2 7 7 N 1.40122 * 126.49552 * 270.16020 * 6 5 4 8 8 N 1.28674 * 108.93763 * 180.25663 * 7 6 5 9 9 C 1.34841 * 109.63180 * 359.76464 * 8 7 6 10 10 C 1.41498 * 126.02257 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00383 * 188.19104 * 10 9 8 12 12 C 1.39741 * 119.99583 * 8.18679 * 10 9 8 13 13 N 1.30988 * 120.00029 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99892 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47029 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46934 * 120.00132 * 14 12 10 17 17 H 1.48498 * 109.47308 * 240.00203 * 14 12 10 18 18 C 1.35026 * 126.49204 * 90.00319 * 6 5 4 19 19 C 1.50700 * 126.77003 * 0.02562 * 18 6 5 20 20 C 1.53780 * 113.61292 * 126.62673 * 19 18 6 21 21 C 1.53782 * 87.08105 * 139.98165 * 20 19 18 22 22 C 1.53784 * 87.17135 * 334.53017 * 21 20 19 23 23 H 1.08995 * 109.47382 * 300.00332 * 1 2 3 24 24 H 1.09005 * 109.46538 * 60.00162 * 1 2 3 25 25 H 1.09000 * 109.47328 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47475 * 239.99211 * 2 1 3 27 27 H 1.09000 * 109.47398 * 59.99164 * 3 2 1 28 28 H 1.09002 * 109.47344 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46820 * 299.99959 * 3 2 1 30 30 H 1.09006 * 109.46664 * 55.00099 * 4 2 1 31 31 H 1.08996 * 109.47330 * 295.00671 * 4 2 1 32 32 H 1.09003 * 109.46749 * 60.00057 * 5 4 2 33 33 H 1.09003 * 109.47378 * 300.00919 * 5 4 2 34 34 H 0.97003 * 119.99590 * 179.97438 * 13 12 10 35 35 H 1.09007 * 112.90753 * 355.38286 * 19 18 6 36 36 H 1.08999 * 113.61479 * 25.43301 * 20 19 18 37 37 H 1.08995 * 113.61736 * 254.53000 * 20 19 18 38 38 H 1.09005 * 113.61264 * 89.11816 * 21 20 19 39 39 H 1.08993 * 113.61710 * 219.93385 * 21 20 19 40 40 H 1.08999 * 113.61508 * 140.02715 * 22 21 20 41 41 H 1.09007 * 113.60688 * 270.92469 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5648 -0.8311 1.1881 6 7 4.0530 -1.5221 2.3841 7 7 4.4204 -0.9275 3.5985 8 7 4.8035 -1.8460 4.4142 9 6 4.7111 -3.0508 3.8155 10 6 5.0433 -4.2969 4.3977 11 1 5.0586 -5.1897 3.7904 12 6 5.3516 -4.3722 5.7586 13 7 5.3326 -3.2893 6.4953 14 14 5.7909 -6.0172 6.5271 15 1 5.7413 -7.0776 5.4887 16 1 7.1603 -5.9471 7.0974 17 1 4.8210 -6.3343 7.6059 18 6 4.2314 -2.8530 2.5259 19 6 3.9687 -3.9140 1.4884 20 6 5.1718 -4.8372 1.2332 21 6 4.1650 -5.9969 1.1543 22 6 3.2371 -5.1512 2.0424 23 1 -0.3634 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6767 1.9564 0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6053 -1.7198 1.2953 31 1 1.7515 -0.1583 2.1370 32 1 3.9994 0.1675 1.1421 33 1 3.8532 -1.3940 0.3004 34 1 5.5463 -3.3417 7.4401 35 1 3.5233 -3.5151 0.5769 36 1 5.8547 -4.9086 2.0797 37 1 5.6830 -4.6380 0.2914 38 1 3.7732 -6.1676 0.1515 39 1 4.5139 -6.9115 1.6336 40 1 2.1875 -5.2055 1.7536 41 1 3.3921 -5.3085 3.1099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544511.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:59 Heat of formation + Delta-G solvation = 84.487421 kcal Electronic energy + Delta-G solvation = -20449.047179 eV Core-core repulsion = 17558.755951 eV Total energy + Delta-G solvation = -2890.291227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14757 -37.66073 -36.90065 -33.61308 -32.50269 -29.53822 -28.50568 -27.20683 -25.91406 -24.88431 -24.01208 -23.48143 -20.47410 -19.95759 -19.52334 -18.31855 -17.21992 -15.58684 -15.21790 -14.83115 -14.57961 -14.33762 -14.13027 -13.69319 -13.47033 -13.06913 -12.51684 -12.25732 -11.98697 -11.83045 -11.68989 -11.51621 -11.43296 -11.20465 -11.13534 -11.07231 -10.86476 -10.66559 -10.53390 -10.33502 -9.90853 -9.80508 -9.67922 -9.46247 -9.21175 -8.75119 -8.31882 -7.28716 -6.32277 -4.10521 2.86331 3.17557 3.23259 3.26226 3.68731 4.16559 4.36410 4.83077 4.88563 4.93439 5.22070 5.33262 5.36091 5.39187 5.48470 5.53159 5.58662 5.64850 5.66469 5.76982 5.80965 5.86845 5.94031 6.02124 6.03890 6.09960 6.18543 6.31198 6.34161 6.43594 6.46799 6.47599 6.79087 6.82286 6.91792 7.21369 7.28785 7.49890 7.62231 8.23707 8.48190 8.89747 9.14447 10.28577 10.65215 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.005956 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.474113 B = 4700.156705 C = 5474.641357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.129 4.129 5 C 0.138 3.862 6 N -0.377 5.377 7 N -0.138 5.138 8 N -0.231 5.231 9 C 0.155 3.845 10 C -0.453 4.453 11 H 0.090 0.910 12 C 0.073 3.927 13 N -0.778 5.778 14 Si 0.900 3.100 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.278 1.278 18 C -0.097 4.097 19 C -0.009 4.009 20 C -0.133 4.133 21 C -0.144 4.144 22 C -0.136 4.136 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.270 0.730 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 0.502 -12.517 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.168 4.168 5 C 0.014 3.986 6 N -0.172 5.172 7 N -0.113 5.113 8 N -0.102 5.102 9 C 0.025 3.975 10 C -0.489 4.489 11 H 0.107 0.893 12 C -0.145 4.145 13 N -0.405 5.405 14 Si 0.725 3.275 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.228 4.228 19 C -0.030 4.030 20 C -0.171 4.171 21 C -0.182 4.182 22 C -0.174 4.174 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.719 1.985 -11.495 12.992 hybrid contribution 0.004 -1.533 -0.271 1.557 sum -5.715 0.452 -11.767 13.089 Atomic orbital electron populations 1.21820 0.95180 1.01736 1.01573 1.21060 0.95809 0.96340 0.98002 1.21917 1.01322 0.95918 1.01638 1.22046 0.95102 1.01316 0.98293 1.21412 0.94053 0.97778 0.85350 1.49534 1.50008 1.05535 1.12101 1.81485 1.21472 1.20680 0.87657 1.75073 1.15224 0.98834 1.21115 1.18916 0.98277 0.92615 0.87709 1.18704 1.44634 0.92125 0.93472 0.89258 1.25786 0.94042 0.97130 0.97561 1.70028 1.35746 1.28041 1.06680 0.86401 0.78513 0.82990 0.79583 1.18683 1.20308 1.20328 1.21382 1.17762 0.83902 0.99751 1.20455 0.97231 0.91059 0.94250 1.23055 0.96986 0.95358 1.01682 1.22777 0.98508 0.97631 0.99246 1.23197 0.96810 0.94841 1.02572 0.92658 0.92849 0.92694 0.91213 0.92489 0.92350 0.92936 0.91447 0.91149 0.89859 0.90571 0.91952 0.90998 0.88121 0.92995 0.91463 0.91835 0.93047 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.19 37.16 0.34 -1.11 16 2 C -0.09 -1.01 2.92 -90.62 -0.26 -1.28 16 3 C -0.15 -1.54 8.95 37.16 0.33 -1.21 16 4 C -0.13 -1.84 5.01 -26.73 -0.13 -1.98 16 5 C 0.14 2.25 5.95 -4.05 -0.02 2.23 16 6 N -0.38 -8.40 3.63 -56.17 -0.20 -8.60 16 7 N -0.14 -3.65 13.74 60.35 0.83 -2.82 16 8 N -0.23 -6.78 10.60 32.05 0.34 -6.44 16 9 C 0.16 4.23 6.53 -85.02 -0.55 3.68 16 10 C -0.45 -11.99 7.10 -37.78 -0.27 -12.26 16 11 H 0.09 2.17 4.62 -52.49 -0.24 1.93 16 12 C 0.07 1.94 5.49 -17.35 -0.10 1.85 16 13 N -0.78 -22.16 11.96 55.54 0.66 -21.49 16 14 Si 0.90 19.51 29.56 -169.99 -5.02 14.48 16 15 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 C -0.10 -2.24 6.34 -80.90 -0.51 -2.75 16 19 C -0.01 -0.17 3.98 -90.82 -0.36 -0.53 16 20 C -0.13 -2.31 7.19 -25.92 -0.19 -2.49 16 21 C -0.14 -2.20 8.07 -25.92 -0.21 -2.41 16 22 C -0.14 -2.41 7.20 -25.78 -0.19 -2.60 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.28 6.56 -51.93 -0.34 0.94 16 33 H 0.08 1.10 7.32 -51.93 -0.38 0.72 16 34 H 0.27 7.08 8.30 -40.82 -0.34 6.74 16 35 H 0.07 1.18 7.23 -51.92 -0.38 0.81 16 36 H 0.10 2.01 6.04 -51.93 -0.31 1.70 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.11 2.30 5.32 -51.92 -0.28 2.02 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -31.01 324.40 -7.11 -38.12 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.48 Total: 2.72 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -2.12 Total: -20.85 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 1.63 Total: -39.36 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.01 -7.11 -38.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544511.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.604 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds