Wall clock time and date at job start Mon Mar 30 2020 07:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47494 * 2 1 4 4 C 1.50704 * 109.46930 * 119.99981 * 2 1 3 5 5 H 1.08001 * 119.99725 * 120.00248 * 4 2 1 6 6 C 1.37871 * 119.99847 * 299.99456 * 4 2 1 7 7 N 1.31512 * 120.00056 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99710 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47188 * 89.99926 * 8 6 4 10 10 H 1.48502 * 109.46798 * 210.00224 * 8 6 4 11 11 H 1.48499 * 109.47134 * 329.99878 * 8 6 4 12 12 N 1.46901 * 109.46767 * 239.99674 * 2 1 3 13 13 C 1.46897 * 111.00044 * 85.00409 * 12 2 1 14 14 C 1.52997 * 109.47347 * 179.97438 * 13 12 2 15 15 C 1.53002 * 109.47415 * 174.99620 * 14 13 12 16 16 C 1.52997 * 109.46817 * 59.99873 * 15 14 13 17 17 C 1.53006 * 109.47127 * 60.00361 * 16 15 14 18 18 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 19 19 C 1.53002 * 109.46978 * 299.99874 * 18 17 16 20 20 C 1.52997 * 109.47415 * 180.02562 * 15 14 13 21 21 C 1.53002 * 109.47454 * 300.00078 * 19 18 17 22 22 C 1.52996 * 109.47165 * 294.99642 * 14 13 12 23 23 C 1.52997 * 109.47131 * 300.00167 * 22 14 13 24 24 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46929 * 300.00020 * 1 2 3 26 26 H 1.09003 * 109.47415 * 59.99711 * 1 2 3 27 27 H 0.97002 * 119.99878 * 179.97438 * 7 6 4 28 28 H 1.00902 * 110.99933 * 321.04580 * 12 2 1 29 29 H 1.08998 * 109.47522 * 59.99583 * 13 12 2 30 30 H 1.09000 * 109.46693 * 299.99450 * 13 12 2 31 31 H 1.09000 * 109.47140 * 54.99596 * 14 13 12 32 32 H 1.09002 * 109.47070 * 300.00053 * 15 14 13 33 33 H 1.09001 * 109.47502 * 300.00518 * 16 15 14 34 34 H 1.09001 * 109.47289 * 180.02562 * 16 15 14 35 35 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 36 36 H 1.09001 * 109.47375 * 59.99966 * 18 17 16 37 37 H 1.09002 * 109.46777 * 180.02562 * 18 17 16 38 38 H 1.09004 * 109.47006 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47140 * 59.99976 * 20 15 14 40 40 H 1.08998 * 109.47624 * 180.02562 * 20 15 14 41 41 H 1.08999 * 109.46623 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.47067 * 300.00138 * 21 19 18 43 43 H 1.09001 * 109.46993 * 60.00298 * 22 14 13 44 44 H 1.09002 * 109.47153 * 179.97438 * 23 22 14 45 45 H 1.08993 * 109.47194 * 60.00154 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5441 4.4118 10 1 1.3444 -0.9489 5.1123 11 1 2.4878 -2.5654 3.7123 12 7 2.0195 -0.6926 -1.1994 13 6 2.0824 0.2224 -2.3469 14 6 2.5961 -0.5331 -3.5742 15 6 2.5438 0.3850 -4.7970 16 6 3.4215 1.6136 -4.5502 17 6 4.8652 1.1687 -4.3079 18 6 5.3789 0.4132 -5.5351 19 6 4.5012 -0.8155 -5.7819 20 6 3.0569 -0.3707 -6.0244 21 6 4.5534 -1.7336 -4.5591 22 6 4.0397 -0.9779 -3.3318 23 6 4.9174 0.2507 -3.0850 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 0.7082 1.1610 3.4843 28 1 1.4494 -1.4980 -1.4099 29 1 2.7588 1.0460 -2.1183 30 1 1.0870 0.6161 -2.5525 31 1 1.9708 -1.4084 -3.7500 32 1 1.5153 0.7019 -4.9697 33 1 3.0556 2.1519 -3.6758 34 1 3.3839 2.2679 -5.4212 35 1 5.4906 2.0440 -4.1325 36 1 5.3416 1.0672 -6.4063 37 1 6.4073 0.0959 -5.3623 38 1 4.8674 -1.3540 -6.6560 39 1 2.4312 -1.2458 -6.2001 40 1 3.0200 0.2834 -6.8956 41 1 3.9278 -2.6086 -4.7348 42 1 5.5820 -2.0506 -4.3864 43 1 4.0770 -1.6320 -2.4607 44 1 5.9458 -0.0663 -2.9119 45 1 4.5515 0.7889 -2.2107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216555545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:08 Heat of formation + Delta-G solvation = -38.371173 kcal Electronic energy + Delta-G solvation = -21396.457711 eV Core-core repulsion = 18604.379278 eV Total energy + Delta-G solvation = -2792.078432 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31615 -36.09005 -33.44332 -32.45121 -32.39881 -31.62951 -28.50556 -25.83431 -25.66018 -25.05823 -23.06022 -21.27454 -21.19157 -20.27896 -19.94751 -17.19133 -16.12369 -14.96298 -14.90474 -14.65191 -14.39429 -14.20896 -13.97367 -13.32297 -13.10891 -12.89704 -12.84742 -12.65603 -12.23480 -12.12717 -12.04927 -11.56251 -11.17262 -10.96195 -10.86850 -10.74425 -10.71052 -10.62236 -10.59276 -10.41511 -10.28240 -10.07095 -9.80269 -9.40545 -9.34901 -9.23089 -8.91510 -8.31550 -7.10451 -5.93792 -3.96662 3.35472 3.41466 3.45725 4.47494 4.65367 4.65753 4.70013 5.20375 5.27114 5.30994 5.37532 5.37819 5.42732 5.47579 5.53449 5.54915 5.59220 5.71494 5.81359 5.88214 5.91796 6.01432 6.08444 6.11325 6.17958 6.22144 6.23941 6.28829 6.31609 6.38035 6.43974 6.51608 6.69011 6.74955 6.77676 6.88918 6.91404 6.94225 7.17182 7.45501 7.79212 7.94750 8.34825 8.62932 8.70818 9.11023 9.68680 11.13250 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.032255 B = 0.004890 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.872666 B = 5724.451989 C = 5971.965606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.031 0.969 4 C -0.491 4.491 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.681 5.681 13 C 0.063 3.937 14 C -0.070 4.070 15 C -0.081 4.081 16 C -0.108 4.108 17 C -0.086 4.086 18 C -0.105 4.105 19 C -0.085 4.085 20 C -0.105 4.105 21 C -0.109 4.109 22 C -0.070 4.070 23 C -0.107 4.107 24 H 0.026 0.974 25 H 0.087 0.913 26 H 0.004 0.996 27 H 0.258 0.742 28 H 0.322 0.678 29 H 0.069 0.931 30 H 0.012 0.988 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 -0.857 -16.919 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.310 5.310 13 C -0.067 4.067 14 C -0.089 4.089 15 C -0.100 4.100 16 C -0.146 4.146 17 C -0.104 4.104 18 C -0.143 4.143 19 C -0.103 4.103 20 C -0.143 4.143 21 C -0.147 4.147 22 C -0.088 4.088 23 C -0.145 4.145 24 H 0.045 0.955 25 H 0.106 0.894 26 H 0.023 0.977 27 H 0.068 0.932 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.072 0.928 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.286 -0.655 -16.599 17.761 hybrid contribution -0.782 -0.245 0.662 1.053 sum 5.504 -0.901 -15.937 16.885 Atomic orbital electron populations 1.22424 1.00942 0.99057 1.00336 1.19136 0.89414 0.94315 0.86728 0.95134 1.21175 1.29904 1.12294 0.89654 0.92022 1.24951 0.95408 0.95242 0.99007 1.69888 1.37454 1.23343 1.23206 0.86533 0.78419 0.80036 0.82584 1.20824 1.21493 1.19976 1.60787 1.57712 1.08992 1.03509 1.22043 0.97822 0.96139 0.90722 1.21095 0.96549 0.97486 0.93770 1.21048 0.98535 0.95519 0.94856 1.21549 0.94972 0.96885 1.01151 1.21044 0.96175 0.97781 0.95400 1.21519 0.98533 0.96603 0.97629 1.21045 0.95415 0.96147 0.97740 1.21522 0.95908 0.99546 0.97279 1.21586 1.00573 0.97533 0.94974 1.20906 0.93777 0.96679 0.97465 1.21538 0.99153 0.96401 0.97391 0.95459 0.89408 0.97746 0.93173 0.86231 0.91262 0.96971 0.92060 0.91824 0.91577 0.92772 0.91904 0.92666 0.92406 0.92099 0.92347 0.92569 0.92475 0.92491 0.89625 0.92768 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.94 37.16 0.33 -3.78 16 2 C 0.21 5.35 2.57 -68.86 -0.18 5.17 16 3 H 0.03 0.85 7.80 -51.93 -0.41 0.45 16 4 C -0.49 -13.67 8.84 -34.44 -0.30 -13.97 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.00 11.32 55.43 0.63 -25.37 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.28 5.69 -107.96 -0.61 -14.90 16 13 C 0.06 1.11 4.17 -3.83 -0.02 1.10 16 14 C -0.07 -1.02 2.07 -90.62 -0.19 -1.21 16 15 C -0.08 -1.02 2.72 -90.62 -0.25 -1.26 16 16 C -0.11 -1.34 4.92 -26.73 -0.13 -1.48 16 17 C -0.09 -1.04 3.19 -90.62 -0.29 -1.33 16 18 C -0.11 -1.14 5.19 -26.73 -0.14 -1.28 16 19 C -0.09 -0.93 3.20 -90.59 -0.29 -1.22 16 20 C -0.11 -1.16 5.20 -26.70 -0.14 -1.30 16 21 C -0.11 -1.32 5.19 -26.73 -0.14 -1.46 16 22 C -0.07 -1.00 2.61 -90.62 -0.24 -1.23 16 23 C -0.11 -1.52 4.92 -26.73 -0.13 -1.65 16 24 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.09 2.38 6.07 -51.92 -0.32 2.06 16 26 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.32 6.52 8.47 -39.29 -0.33 6.19 16 29 H 0.07 1.30 4.74 -51.93 -0.25 1.05 16 30 H 0.01 0.23 7.44 -51.93 -0.39 -0.16 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.90 6.54 -51.93 -0.34 0.56 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.42 7.75 -51.93 -0.40 1.02 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.20 6.32 -51.93 -0.33 0.87 16 LS Contribution 321.44 15.07 4.84 4.84 Total: -1.00 -27.72 321.44 -10.54 -38.26 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.18 Total: 3.96 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.19 Total: -23.48 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.01 Total: -40.27 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.72 -10.54 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216555545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.112 kcal (2) G-P(sol) polarization free energy of solvation -27.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds