Wall clock time and date at job start Mon Mar 30 2020 07:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47494 * 2 1 4 4 C 1.50704 * 109.46930 * 119.99981 * 2 1 3 5 5 H 1.08001 * 119.99725 * 120.00248 * 4 2 1 6 6 C 1.37871 * 119.99847 * 299.99456 * 4 2 1 7 7 N 1.31512 * 120.00056 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99710 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47188 * 89.99926 * 8 6 4 10 10 H 1.48502 * 109.46798 * 210.00224 * 8 6 4 11 11 H 1.48499 * 109.47134 * 329.99878 * 8 6 4 12 12 N 1.46901 * 109.46767 * 239.99674 * 2 1 3 13 13 C 1.46897 * 111.00044 * 85.00409 * 12 2 1 14 14 C 1.52997 * 109.47347 * 179.97438 * 13 12 2 15 15 C 1.53002 * 109.47415 * 174.99620 * 14 13 12 16 16 C 1.52997 * 109.46817 * 59.99873 * 15 14 13 17 17 C 1.53006 * 109.47127 * 60.00361 * 16 15 14 18 18 C 1.52997 * 109.47164 * 59.99836 * 17 16 15 19 19 C 1.53002 * 109.46978 * 299.99874 * 18 17 16 20 20 C 1.52997 * 109.47415 * 180.02562 * 15 14 13 21 21 C 1.53002 * 109.47454 * 300.00078 * 19 18 17 22 22 C 1.52996 * 109.47165 * 294.99642 * 14 13 12 23 23 C 1.52997 * 109.47131 * 300.00167 * 22 14 13 24 24 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46929 * 300.00020 * 1 2 3 26 26 H 1.09003 * 109.47415 * 59.99711 * 1 2 3 27 27 H 0.97002 * 119.99878 * 179.97438 * 7 6 4 28 28 H 1.00902 * 110.99933 * 321.04580 * 12 2 1 29 29 H 1.08998 * 109.47522 * 59.99583 * 13 12 2 30 30 H 1.09000 * 109.46693 * 299.99450 * 13 12 2 31 31 H 1.09000 * 109.47140 * 54.99596 * 14 13 12 32 32 H 1.09002 * 109.47070 * 300.00053 * 15 14 13 33 33 H 1.09001 * 109.47502 * 300.00518 * 16 15 14 34 34 H 1.09001 * 109.47289 * 180.02562 * 16 15 14 35 35 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 36 36 H 1.09001 * 109.47375 * 59.99966 * 18 17 16 37 37 H 1.09002 * 109.46777 * 180.02562 * 18 17 16 38 38 H 1.09004 * 109.47006 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47140 * 59.99976 * 20 15 14 40 40 H 1.08998 * 109.47624 * 180.02562 * 20 15 14 41 41 H 1.08999 * 109.46623 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.47067 * 300.00138 * 21 19 18 43 43 H 1.09001 * 109.46993 * 60.00298 * 22 14 13 44 44 H 1.09002 * 109.47153 * 179.97438 * 23 22 14 45 45 H 1.08993 * 109.47194 * 60.00154 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5441 4.4118 10 1 1.3444 -0.9489 5.1123 11 1 2.4878 -2.5654 3.7123 12 7 2.0195 -0.6926 -1.1994 13 6 2.0824 0.2224 -2.3469 14 6 2.5961 -0.5331 -3.5742 15 6 2.5438 0.3850 -4.7970 16 6 3.4215 1.6136 -4.5502 17 6 4.8652 1.1687 -4.3079 18 6 5.3789 0.4132 -5.5351 19 6 4.5012 -0.8155 -5.7819 20 6 3.0569 -0.3707 -6.0244 21 6 4.5534 -1.7336 -4.5591 22 6 4.0397 -0.9779 -3.3318 23 6 4.9174 0.2507 -3.0850 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 0.7082 1.1610 3.4843 28 1 1.4494 -1.4980 -1.4099 29 1 2.7588 1.0460 -2.1183 30 1 1.0870 0.6161 -2.5525 31 1 1.9708 -1.4084 -3.7500 32 1 1.5153 0.7019 -4.9697 33 1 3.0556 2.1519 -3.6758 34 1 3.3839 2.2679 -5.4212 35 1 5.4906 2.0440 -4.1325 36 1 5.3416 1.0672 -6.4063 37 1 6.4073 0.0959 -5.3623 38 1 4.8674 -1.3540 -6.6560 39 1 2.4312 -1.2458 -6.2001 40 1 3.0200 0.2834 -6.8956 41 1 3.9278 -2.6086 -4.7348 42 1 5.5820 -2.0506 -4.3864 43 1 4.0770 -1.6320 -2.4607 44 1 5.9458 -0.0663 -2.9119 45 1 4.5515 0.7889 -2.2107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216555545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:07 Heat of formation + Delta-G solvation = -52.705095 kcal Electronic energy + Delta-G solvation = -21397.079276 eV Core-core repulsion = 18604.379278 eV Total energy + Delta-G solvation = -2792.699998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.35884 -37.85019 -35.09047 -33.50284 -33.41808 -33.27078 -30.19524 -27.33588 -27.03383 -26.65644 -24.38015 -22.47913 -22.21846 -21.91267 -21.24732 -18.54684 -17.94347 -16.76355 -16.16763 -15.94993 -15.83810 -15.39889 -15.13977 -14.69015 -14.49630 -14.13540 -14.08565 -13.98711 -13.54276 -13.47441 -13.19849 -13.16684 -12.88720 -12.74494 -12.62160 -12.25921 -12.15601 -12.04119 -11.68732 -11.67686 -11.63482 -11.49644 -11.45681 -10.99810 -10.48931 -10.42713 -10.40238 -10.29465 -8.88552 -8.09207 -6.20403 1.42488 1.42792 1.53908 2.44034 3.18896 3.54833 3.64861 3.72162 3.88288 4.20983 4.29886 4.30998 4.42146 4.43408 4.50611 4.51941 4.57899 4.62177 4.68660 4.74207 4.78222 4.85025 4.87835 4.92713 4.97403 5.04454 5.10252 5.16128 5.22792 5.23819 5.27358 5.31290 5.32378 5.35089 5.39391 5.44695 5.64871 5.68825 5.71679 5.77836 5.79952 5.83381 6.28510 6.68223 6.86846 6.96714 7.49838 8.96425 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.032255 B = 0.004890 C = 0.004687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.872666 B = 5724.451989 C = 5971.965606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.218 3.782 3 H -0.005 1.005 4 C -0.511 4.511 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.680 5.680 13 C 0.068 3.932 14 C -0.063 4.063 15 C -0.079 4.079 16 C -0.108 4.108 17 C -0.084 4.084 18 C -0.102 4.102 19 C -0.083 4.083 20 C -0.101 4.101 21 C -0.105 4.105 22 C -0.069 4.069 23 C -0.107 4.107 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.021 0.979 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.055 0.945 30 H 0.006 0.994 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 -1.675 -18.938 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.109 3.891 3 H 0.013 0.987 4 C -0.550 4.550 5 H 0.072 0.928 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.309 5.309 13 C -0.061 4.061 14 C -0.081 4.081 15 C -0.098 4.098 16 C -0.146 4.146 17 C -0.102 4.102 18 C -0.139 4.139 19 C -0.101 4.101 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.088 4.088 23 C -0.144 4.144 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.073 0.927 30 H 0.024 0.976 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.028 -1.479 -18.636 19.972 hybrid contribution -1.014 0.047 1.310 1.657 sum 6.014 -1.432 -17.326 18.396 Atomic orbital electron populations 1.22229 1.00235 0.99148 0.99817 1.18889 0.89822 0.92439 0.87968 0.98699 1.21449 1.30178 1.12335 0.91048 0.92787 1.25732 0.95496 0.95907 1.01931 1.70018 1.38157 1.24418 1.23909 0.85516 0.77895 0.79076 0.78866 1.20419 1.20869 1.19306 1.60656 1.57362 1.09414 1.03505 1.22045 0.97294 0.95711 0.91042 1.21028 0.96543 0.97529 0.93043 1.21043 0.98881 0.95261 0.94619 1.21551 0.95004 0.97001 1.01028 1.21033 0.96272 0.97667 0.95239 1.21511 0.98703 0.96610 0.97086 1.21073 0.95449 0.95976 0.97633 1.21514 0.95914 0.99831 0.96603 1.21549 1.00779 0.97643 0.94289 1.20840 0.93770 0.96417 0.97752 1.21494 0.99039 0.96586 0.97312 0.94897 0.92066 0.96005 0.93069 0.85584 0.92693 0.97565 0.91935 0.91760 0.93810 0.90780 0.91516 0.90905 0.91794 0.89922 0.91792 0.90746 0.92058 0.91952 0.92669 0.92462 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.72 8.94 71.98 0.64 -7.08 16 2 C 0.22 11.39 2.57 44.17 0.11 11.50 16 3 H 0.00 -0.29 7.80 -2.39 -0.02 -0.31 16 4 C -0.51 -29.15 8.84 25.60 0.23 -28.92 16 5 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.40 5.30 84.65 0.45 0.85 16 7 N -0.92 -54.57 11.32 21.44 0.24 -54.33 16 8 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 N -0.68 -29.47 5.69 -495.47 -2.82 -32.29 16 13 C 0.07 2.52 4.17 86.30 0.36 2.88 16 14 C -0.06 -1.80 2.07 -10.80 -0.02 -1.82 16 15 C -0.08 -1.86 2.72 -10.79 -0.03 -1.89 16 16 C -0.11 -2.56 4.92 30.60 0.15 -2.41 16 17 C -0.08 -1.93 3.19 -10.79 -0.03 -1.96 16 18 C -0.10 -1.86 5.19 30.59 0.16 -1.70 16 19 C -0.08 -1.51 3.20 -10.77 -0.03 -1.55 16 20 C -0.10 -1.88 5.20 30.61 0.16 -1.72 16 21 C -0.11 -2.32 5.19 30.60 0.16 -2.16 16 22 C -0.07 -1.97 2.61 -10.79 -0.03 -1.99 16 23 C -0.11 -3.05 4.92 30.59 0.15 -2.90 16 24 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 25 H 0.06 3.39 6.07 -2.38 -0.01 3.38 16 26 H 0.02 0.96 7.45 -2.39 -0.02 0.94 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.33 13.48 8.47 -89.69 -0.76 12.72 16 29 H 0.05 2.19 4.74 -2.39 -0.01 2.18 16 30 H 0.01 0.23 7.44 -2.39 -0.02 0.22 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.21 6.54 -2.39 -0.02 1.20 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.88 7.75 -2.39 -0.02 1.86 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.04 1.35 6.32 -2.39 -0.02 1.33 16 Total: -1.00 -60.41 321.44 2.06 -58.35 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.19 Total: 22.21 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 2.42 Total: -40.86 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -2.57 Total: -86.62 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -60.41 2.06 -58.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216555545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.643 kcal (2) G-P(sol) polarization free energy of solvation -60.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds