Wall clock time and date at job start Mon Mar 30 2020 07:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 H 1.08993 * 109.47221 * 178.72757 * 3 2 1 5 5 C 1.50699 * 109.46939 * 58.72687 * 3 2 1 6 6 H 1.08005 * 119.99570 * 239.99984 * 5 3 2 7 7 C 1.37875 * 120.00269 * 59.72517 * 5 3 2 8 8 N 1.31515 * 119.99911 * 0.27830 * 7 5 3 9 9 Si 1.86803 * 120.00161 * 180.27253 * 7 5 3 10 10 H 1.48497 * 109.47005 * 59.99938 * 9 7 5 11 11 H 1.48502 * 109.47133 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47146 * 300.00261 * 9 7 5 13 13 N 1.46897 * 109.46829 * 298.72707 * 3 2 1 14 14 C 1.49964 * 111.00163 * 298.96914 * 13 3 2 15 15 C 1.52949 * 102.74957 * 211.79148 * 14 13 3 16 16 H 1.09006 * 112.31282 * 286.27319 * 15 14 13 17 17 C 1.56088 * 97.69651 * 43.96383 * 15 14 13 18 18 H 1.08994 * 102.11204 * 61.11640 * 17 15 14 19 19 C 1.48554 * 103.41326 * 312.60866 * 17 15 14 20 20 C 1.48999 * 107.41898 * 171.10369 * 17 15 14 21 21 C 1.55122 * 108.50368 * 23.73237 * 20 17 15 22 22 C 1.53918 * 108.26269 * 288.37867 * 21 20 17 23 23 C 1.53122 * 118.22194 * 153.23810 * 15 14 13 24 24 C 1.54719 * 108.76630 * 278.96627 * 23 15 14 25 25 C 1.54130 * 108.90671 * 285.83811 * 24 23 15 26 26 H 1.09004 * 109.46933 * 300.64777 * 1 2 3 27 27 H 1.08999 * 109.46506 * 60.64940 * 1 2 3 28 28 H 1.09003 * 109.47192 * 180.64655 * 1 2 3 29 29 H 1.09002 * 109.46930 * 239.99502 * 2 1 3 30 30 H 1.09009 * 109.46665 * 119.99902 * 2 1 3 31 31 H 0.96994 * 120.00099 * 179.97438 * 8 7 5 32 32 H 1.09000 * 110.75189 * 330.10092 * 14 13 3 33 33 H 1.08994 * 110.75526 * 93.47346 * 14 13 3 34 34 H 1.08999 * 110.46881 * 273.43082 * 19 17 15 35 35 H 1.09004 * 110.57622 * 150.89507 * 19 17 15 36 36 H 1.09006 * 113.28118 * 151.48771 * 20 17 15 37 37 H 1.09000 * 109.71158 * 48.07677 * 21 20 17 38 38 H 1.09001 * 109.70543 * 168.68865 * 21 20 17 39 39 H 1.08995 * 109.89039 * 276.40993 * 22 21 20 40 40 H 1.09001 * 109.88570 * 155.31874 * 22 21 20 41 41 H 1.08994 * 114.18905 * 46.33137 * 23 15 14 42 42 H 1.09008 * 109.56638 * 166.01258 * 24 23 15 43 43 H 1.09005 * 109.56821 * 45.67126 * 24 23 15 44 44 H 1.09006 * 110.19502 * 279.23117 * 25 24 23 45 45 H 1.09002 * 110.19311 * 157.32521 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1298 1.4425 0.0228 5 6 1.5122 2.1619 1.2144 6 1 0.8936 3.0392 1.0957 7 6 1.8142 1.6969 2.4767 8 7 2.5675 0.6286 2.6211 9 14 1.1535 2.5843 3.9819 10 1 -0.3311 2.5836 3.9449 11 1 1.6189 1.8905 5.2096 12 1 1.6478 3.9846 3.9876 13 7 1.5757 2.1260 -1.2145 14 6 2.1029 1.4514 -2.4458 15 6 2.2558 2.6137 -3.4282 16 1 1.2957 2.9644 -3.8070 17 6 2.9055 3.6357 -2.4434 18 1 3.8252 3.1251 -2.1579 19 6 2.0395 3.5523 -1.2393 20 6 3.3534 4.8072 -3.2478 21 6 2.5139 4.8594 -4.5512 22 6 2.9629 3.7019 -5.4609 23 6 3.3037 2.4908 -4.5379 24 6 4.6914 2.8471 -3.9537 25 6 4.7706 4.3727 -3.7497 26 1 -0.3633 0.5239 0.8842 27 1 -0.3632 0.5037 -0.8958 28 1 -0.3634 -1.0276 0.0116 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 2.7803 0.3016 3.5092 32 1 3.0675 0.9842 -2.2472 33 1 1.3879 0.7196 -2.8214 34 1 1.1894 4.2280 -1.3337 35 1 2.6106 3.7831 -0.3400 36 1 3.3583 5.7402 -2.6843 37 1 1.4562 4.7497 -4.3118 38 1 2.6799 5.8104 -5.0574 39 1 3.8464 3.9966 -6.0272 40 1 2.1568 3.4326 -6.1434 41 1 3.2920 1.5336 -5.0591 42 1 5.4713 2.5305 -4.6464 43 1 4.8248 2.3432 -2.9964 44 1 5.0036 4.8670 -4.6929 45 1 5.5251 4.6135 -3.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383999019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:23 Heat of formation + Delta-G solvation = 8.835573 kcal Electronic energy + Delta-G solvation = -21770.622356 eV Core-core repulsion = 18980.590962 eV Total energy + Delta-G solvation = -2790.031394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.77587 -38.65345 -35.55492 -33.27805 -32.41872 -31.44726 -30.49674 -28.64251 -27.69059 -25.40546 -23.51592 -23.20586 -22.14628 -21.55408 -20.74129 -18.36416 -17.80912 -17.23246 -16.85204 -16.70845 -16.37262 -15.45555 -15.22515 -14.53814 -14.36725 -14.20344 -13.73241 -13.53021 -13.14356 -12.95088 -12.88557 -12.78795 -12.71810 -12.55981 -12.48374 -12.43192 -12.38651 -12.22296 -11.86591 -11.83601 -11.76435 -11.47175 -11.18187 -10.85220 -10.70533 -10.54198 -10.49497 -10.24567 -8.89633 -8.08975 -6.18663 1.40190 1.41605 1.49032 2.41948 3.18100 3.33448 3.42957 3.48950 3.86273 4.06389 4.17279 4.24137 4.33519 4.43054 4.50899 4.53142 4.54349 4.57482 4.61359 4.72167 4.75402 4.78023 4.86533 4.88781 4.98083 5.03274 5.06428 5.12740 5.17661 5.25872 5.26942 5.36581 5.38916 5.43972 5.47834 5.49289 5.53569 5.62734 5.71608 5.73611 5.76335 5.85397 6.25504 6.38604 6.68261 6.93661 7.48651 8.96627 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.005946 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.159293 B = 4708.244670 C = 5087.714419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C 0.222 3.778 4 H -0.051 1.051 5 C -0.504 4.504 6 H 0.052 0.948 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.522 5.522 14 C 0.047 3.953 15 C -0.087 4.087 16 H 0.092 0.908 17 C -0.132 4.132 18 H 0.043 0.957 19 C 0.072 3.928 20 C -0.068 4.068 21 C -0.110 4.110 22 C -0.109 4.109 23 C -0.079 4.079 24 C -0.120 4.120 25 C -0.113 4.113 26 H 0.034 0.966 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.260 0.740 32 H 0.020 0.980 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.090 0.910 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 6.431 -16.144 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C 0.114 3.886 4 H -0.033 1.033 5 C -0.542 4.542 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.246 5.246 14 C -0.081 4.081 15 C -0.106 4.106 16 H 0.110 0.890 17 C -0.151 4.151 18 H 0.061 0.939 19 C -0.055 4.055 20 C -0.087 4.087 21 C -0.148 4.148 22 C -0.146 4.146 23 C -0.098 4.098 24 C -0.158 4.158 25 C -0.150 4.150 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.108 0.892 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.485 6.262 -15.968 17.216 hybrid contribution 0.824 -0.050 1.681 1.873 sum 2.309 6.212 -14.287 15.749 Atomic orbital electron populations 1.21303 0.95673 0.98505 1.00868 1.21384 0.96557 0.97430 0.98893 1.19145 0.89907 0.92005 0.87499 1.03329 1.21214 1.30674 1.11542 0.90791 0.92954 1.25622 0.95557 0.95780 1.01488 1.70011 1.38568 1.24296 1.23189 0.85708 0.78962 0.78680 0.78901 1.19619 1.21021 1.19917 1.65173 1.56268 1.01237 1.01950 1.22836 0.96982 0.96957 0.91316 1.22589 0.99039 0.94392 0.94565 0.89018 1.21483 0.99485 0.98907 0.95254 0.93855 1.21485 0.97098 0.90995 0.95936 1.21295 0.95892 0.96333 0.95172 1.22191 0.99058 0.99001 0.94519 1.22415 1.01661 0.93835 0.96712 1.22117 0.92977 0.99170 0.95522 1.22231 0.97370 0.96497 0.99667 1.22700 0.95737 0.95145 1.01444 0.94692 0.93036 0.94420 0.95762 0.92200 0.93107 0.96160 0.91022 0.92079 0.94791 0.89668 0.92473 0.90379 0.90348 0.91152 0.88889 0.90652 0.94571 0.89194 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.82 9.51 71.98 0.68 -4.14 16 2 C -0.10 -5.22 5.29 30.60 0.16 -5.06 16 3 C 0.22 11.65 1.46 44.17 0.06 11.72 16 4 H -0.05 -3.05 8.09 -2.39 -0.02 -3.07 16 5 C -0.50 -28.24 6.27 25.60 0.16 -28.08 16 6 H 0.05 2.95 7.40 -2.91 -0.02 2.93 16 7 C 0.01 0.78 5.30 84.65 0.45 1.23 16 8 N -0.92 -54.17 11.32 21.45 0.24 -53.93 16 9 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.52 -23.07 4.43 -866.75 -3.84 -26.91 16 14 C 0.05 1.73 4.86 85.69 0.42 2.15 16 15 C -0.09 -2.55 2.57 -9.70 -0.02 -2.57 16 16 H 0.09 2.63 6.50 -2.38 -0.02 2.62 16 17 C -0.13 -4.25 2.35 -12.40 -0.03 -4.28 16 18 H 0.04 1.59 4.25 -2.39 -0.01 1.58 16 19 C 0.07 2.95 5.97 84.29 0.50 3.45 16 20 C -0.07 -1.66 4.33 -10.12 -0.04 -1.70 16 21 C -0.11 -2.17 5.36 31.63 0.17 -2.00 16 22 C -0.11 -1.94 5.46 31.96 0.17 -1.76 16 23 C -0.08 -1.81 4.14 -9.11 -0.04 -1.84 16 24 C -0.12 -2.86 5.35 31.56 0.17 -2.69 16 25 C -0.11 -2.45 5.58 32.19 0.18 -2.27 16 26 H 0.03 1.72 7.15 -2.38 -0.02 1.70 16 27 H 0.05 2.21 7.66 -2.39 -0.02 2.19 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.02 1.11 7.15 -2.39 -0.02 1.10 16 30 H 0.06 3.36 6.09 -2.38 -0.01 3.35 16 31 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.02 0.82 7.56 -2.39 -0.02 0.80 16 33 H 0.07 2.56 8.13 -2.39 -0.02 2.54 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.03 1.58 7.00 -2.39 -0.02 1.57 16 36 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.06 1.24 6.84 -2.39 -0.02 1.22 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.17 6.90 -2.39 -0.02 1.15 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.04 1.09 6.14 -2.38 -0.01 1.08 16 44 H 0.09 1.52 6.84 -2.38 -0.02 1.50 16 45 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -61.39 317.57 2.36 -59.03 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.94 Total: 12.96 kcal Atomic # 6 Polarization: -40.85 SS G_CDS: 3.00 Total: -37.85 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -3.60 Total: -80.84 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -61.39 2.36 -59.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383999019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.863 kcal (2) G-P(sol) polarization free energy of solvation -61.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds