Wall clock time and date at job start Mon Mar 30 2020 07:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99775 * 2 1 4 4 N 1.46900 * 109.47320 * 125.04457 * 3 2 1 5 5 C 1.46898 * 111.00252 * 199.90425 * 4 3 2 6 6 C 1.50702 * 109.47525 * 66.04270 * 5 4 3 7 7 H 1.08002 * 119.99609 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00242 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00228 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99980 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46888 * 89.99837 * 10 8 6 12 12 H 1.48493 * 109.47271 * 209.99871 * 10 8 6 13 13 H 1.48504 * 109.46943 * 330.00195 * 10 8 6 14 14 C 1.46898 * 111.00204 * 75.94495 * 4 3 2 15 15 C 1.52997 * 109.47446 * 199.94932 * 14 4 3 16 16 H 1.09001 * 109.64357 * 304.57288 * 15 14 4 17 17 C 1.53026 * 109.64032 * 65.20637 * 15 14 4 18 18 C 1.50063 * 110.14716 * 169.12163 * 17 15 14 19 19 C 1.50706 * 117.96282 * 162.84521 * 18 17 15 20 20 C 1.29438 * 124.07814 * 342.86524 * 18 17 15 21 21 C 1.50070 * 124.07398 * 0.47415 * 20 18 17 22 22 H 1.08998 * 109.35843 * 103.07607 * 21 20 18 23 23 C 1.53003 * 109.35669 * 222.65783 * 21 20 18 24 24 C 1.53023 * 110.14742 * 342.86730 * 21 20 18 25 25 H 1.07994 * 119.99721 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.00302 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00302 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47620 * 5.04580 * 3 2 1 29 29 H 1.08999 * 109.47295 * 245.04088 * 3 2 1 30 30 H 1.09001 * 109.47276 * 186.04572 * 5 4 3 31 31 H 1.09004 * 109.47012 * 306.04257 * 5 4 3 32 32 H 0.97000 * 120.00484 * 180.02562 * 9 8 6 33 33 H 1.09006 * 109.46708 * 79.95072 * 14 4 3 34 34 H 1.08998 * 109.47245 * 319.95485 * 14 4 3 35 35 H 1.09000 * 109.35536 * 289.33057 * 17 15 14 36 36 H 1.08999 * 109.35925 * 48.91135 * 17 15 14 37 37 H 1.08996 * 109.47497 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47061 * 300.02136 * 19 18 17 39 39 H 1.09000 * 109.46771 * 60.02132 * 19 18 17 40 40 H 1.08001 * 117.96458 * 180.48880 * 20 18 17 41 41 H 1.09005 * 109.47009 * 180.68990 * 23 21 20 42 42 H 1.08995 * 109.47364 * 300.68576 * 23 21 20 43 43 H 1.09001 * 109.47269 * 60.69160 * 23 21 20 44 44 H 1.09007 * 109.64054 * 289.75125 * 24 21 20 45 45 H 1.08997 * 109.64140 * 169.12302 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9970 1.3316 1.1339 5 6 3.3946 2.7085 1.4564 6 6 2.1971 3.4724 1.9600 7 1 1.2368 2.9837 2.0336 8 6 2.3275 4.7950 2.3269 9 7 3.4967 5.3902 2.2369 10 14 0.8429 5.7420 2.9505 11 1 0.7492 5.6000 4.4257 12 1 0.9884 7.1775 2.5997 13 1 -0.3890 5.2011 2.3219 14 6 4.1731 0.4928 0.8673 15 6 4.8571 0.1384 2.1891 16 1 5.0984 1.0516 2.7332 17 6 3.9263 -0.7367 3.0315 18 6 4.6725 -1.3080 4.2014 19 6 3.8689 -1.8614 5.3500 20 6 5.9633 -1.3548 4.2856 21 6 6.8941 -0.8350 3.2295 22 1 7.3042 0.1230 3.5491 23 6 8.0380 -1.8308 3.0269 24 6 6.1428 -0.6500 1.9093 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5401 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1317 0.0904 29 1 2.6207 1.4030 -0.9317 30 1 4.1659 2.6931 2.2265 31 1 3.7846 3.1932 0.5613 32 1 3.5886 6.3206 2.4954 33 1 4.8712 1.0375 0.2315 34 1 3.8604 -0.4217 0.3633 35 1 3.0934 -0.1340 3.3935 36 1 3.5407 -1.5501 2.4167 37 1 4.5445 -2.2371 6.1184 38 1 3.2442 -1.0730 5.7695 39 1 3.2369 -2.6745 4.9928 40 1 6.3974 -1.7956 5.1709 41 1 8.7219 -1.4491 2.2688 42 1 8.5745 -1.9638 3.9663 43 1 7.6324 -2.7887 2.7012 44 1 5.8912 -1.6248 1.4913 45 1 6.7664 -0.0968 1.2072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430103319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:55 Heat of formation + Delta-G solvation = 10.189199 kcal Electronic energy + Delta-G solvation = -20535.603574 eV Core-core repulsion = 17745.630877 eV Total energy + Delta-G solvation = -2789.972697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.08759 -36.85477 -33.38777 -33.23605 -32.78064 -31.26788 -27.31387 -26.68837 -26.23874 -25.72698 -23.64217 -21.34577 -20.85867 -19.76762 -18.87827 -17.46420 -16.31729 -15.41212 -15.03808 -14.80122 -14.36885 -14.18488 -13.75413 -13.55097 -13.46424 -13.07707 -12.67821 -12.31368 -12.21790 -12.14944 -11.87752 -11.80871 -11.54008 -11.38982 -11.25423 -11.03840 -10.88406 -10.73132 -10.62078 -10.44770 -10.10149 -9.86216 -9.79091 -9.65516 -9.14522 -8.86125 -8.44248 -8.40594 -7.16850 -6.00539 -4.01290 2.54572 2.77916 3.33210 3.39289 3.42630 4.44532 4.80642 4.96026 4.98793 5.27159 5.31183 5.34923 5.46760 5.49028 5.54868 5.63387 5.71351 5.75420 5.79739 5.88621 5.89691 5.97782 6.03949 6.09396 6.11508 6.16523 6.21779 6.27290 6.32278 6.35466 6.42631 6.50661 6.60906 6.76536 6.91595 7.00697 7.08301 7.29792 7.34158 7.36351 7.38792 7.84407 8.14493 8.25456 8.59219 9.06920 9.62800 11.10280 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.005719 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.961460 B = 4894.592815 C = 5497.288452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 C 0.082 3.918 4 N -0.529 5.529 5 C 0.193 3.807 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.061 3.939 15 C -0.078 4.078 16 H 0.078 0.922 17 C -0.065 4.065 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.168 4.168 21 C -0.058 4.058 22 H 0.075 0.925 23 C -0.140 4.140 24 C -0.108 4.108 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.026 0.974 30 H 0.034 0.966 31 H -0.012 1.012 32 H 0.260 0.740 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 -14.273 0.093 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.146 4.146 3 C -0.046 4.046 4 N -0.253 5.253 5 C 0.068 3.932 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.068 4.068 15 C -0.097 4.097 16 H 0.096 0.904 17 C -0.102 4.102 18 C -0.114 4.114 19 C -0.177 4.177 20 C -0.186 4.186 21 C -0.076 4.076 22 H 0.093 0.907 23 C -0.197 4.197 24 C -0.146 4.146 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.006 0.994 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.455 -14.277 0.538 14.699 hybrid contribution -0.262 0.925 -0.204 0.983 sum 3.193 -13.352 0.334 13.732 Atomic orbital electron populations 1.23679 0.95995 1.01102 1.03442 1.22981 0.95785 0.98481 0.97306 1.21178 0.96155 0.95409 0.91830 1.62083 1.12976 1.14117 1.36141 1.19760 0.96680 0.81549 0.95229 1.21172 0.95692 0.94992 1.42533 0.91887 1.24972 0.95906 0.97686 0.95980 1.69956 1.23061 1.12103 1.48706 0.86547 0.83024 0.78928 0.79206 1.20674 1.21391 1.19883 1.22093 0.92458 0.96830 0.95394 1.21155 0.93594 0.98530 0.96414 0.90355 1.20262 0.98203 0.98127 0.93588 1.21091 0.94815 0.98554 0.96952 1.20959 0.99850 1.00703 0.96210 1.21827 0.94154 1.03275 0.99301 1.19954 0.94679 0.98630 0.94375 0.90658 1.21779 0.97682 0.99103 1.01152 1.21698 0.96608 1.00063 0.96255 0.89409 0.88675 0.88531 0.89139 0.95558 0.94850 0.99396 0.92998 0.95747 0.92484 0.89576 0.91912 0.92760 0.91532 0.92093 0.88709 0.92816 0.93030 0.92896 0.92250 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.09 14.32 29.01 0.42 -2.67 16 2 C -0.13 -2.07 9.33 -36.03 -0.34 -2.41 16 3 C 0.08 1.59 5.24 -4.98 -0.03 1.56 16 4 N -0.53 -11.08 4.01 -237.52 -0.95 -12.04 16 5 C 0.19 4.94 4.55 -4.98 -0.02 4.92 16 6 C -0.51 -14.02 8.23 -34.44 -0.28 -14.31 16 7 H 0.06 1.74 7.32 -52.49 -0.38 1.36 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 10 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.06 1.08 4.20 -3.83 -0.02 1.06 16 15 C -0.08 -1.30 2.29 -90.41 -0.21 -1.51 16 16 H 0.08 1.54 6.68 -51.93 -0.35 1.20 16 17 C -0.06 -1.03 4.91 -28.18 -0.14 -1.17 16 18 C -0.11 -1.63 5.84 -100.94 -0.59 -2.22 16 19 C -0.12 -1.49 9.98 36.01 0.36 -1.13 16 20 C -0.17 -2.27 8.64 -35.90 -0.31 -2.58 16 21 C -0.06 -0.76 2.97 -92.06 -0.27 -1.03 16 22 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 23 C -0.14 -1.49 9.14 37.16 0.34 -1.15 16 24 C -0.11 -1.50 4.60 -26.52 -0.12 -1.62 16 25 H 0.09 1.13 8.06 -52.49 -0.42 0.71 16 26 H 0.09 1.48 7.84 -52.49 -0.41 1.07 16 27 H 0.10 1.44 7.29 -52.49 -0.38 1.06 16 28 H 0.09 1.95 6.23 -51.93 -0.32 1.63 16 29 H 0.03 0.50 8.00 -51.93 -0.42 0.08 16 30 H 0.03 0.92 6.59 -51.93 -0.34 0.58 16 31 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 34 H 0.06 0.91 6.79 -51.93 -0.35 0.56 16 35 H 0.09 1.58 8.06 -51.93 -0.42 1.16 16 36 H 0.06 0.94 8.07 -51.93 -0.42 0.53 16 37 H 0.05 0.59 7.56 -51.93 -0.39 0.20 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.16 7.56 -52.49 -0.40 0.77 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -28.60 353.41 -9.58 -38.18 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.36 Total: 0.56 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -1.31 Total: -22.76 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.22 Total: -37.96 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.60 -9.58 -38.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430103319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.369 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds