Wall clock time and date at job start Mon Mar 30 2020 06:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00335 * 2 1 4 4 H 1.48491 * 109.47082 * 273.56075 * 3 2 1 5 5 H 1.48501 * 109.46681 * 33.55749 * 3 2 1 6 6 H 1.48502 * 109.47015 * 153.55718 * 3 2 1 7 7 C 1.37885 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99801 * 0.14386 * 7 2 1 9 9 C 1.50702 * 119.99677 * 180.13878 * 7 2 1 10 10 C 1.52993 * 115.55227 * 296.90314 * 9 7 2 11 11 N 1.46900 * 109.46981 * 270.62408 * 10 9 7 12 12 C 1.46904 * 111.00034 * 183.82549 * 11 10 9 13 13 H 1.08997 * 109.47260 * 38.86450 * 12 11 10 14 14 C 1.53002 * 109.47109 * 278.86590 * 12 11 10 15 15 C 1.52998 * 109.47118 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47105 * 59.99773 * 15 14 12 17 17 C 1.53002 * 109.47318 * 300.00104 * 16 15 14 18 18 C 1.52997 * 109.47116 * 158.86361 * 12 11 10 19 19 H 1.09007 * 109.47371 * 60.00251 * 18 12 11 20 20 C 1.53002 * 109.47318 * 300.00100 * 18 12 11 21 21 C 1.52997 * 117.49875 * 133.80665 * 20 18 12 22 22 C 1.52995 * 117.49758 * 65.18557 * 20 18 12 23 23 C 1.53006 * 117.51283 * 82.60420 * 9 7 2 24 24 C 1.53001 * 59.99916 * 107.47996 * 23 9 7 25 25 H 0.97000 * 120.00236 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47273 * 150.62635 * 10 9 7 27 27 H 1.09001 * 109.47343 * 30.62274 * 10 9 7 28 28 H 1.00897 * 110.99967 * 59.86918 * 11 10 9 29 29 H 1.08994 * 109.46997 * 59.99857 * 14 12 11 30 30 H 1.09000 * 109.46665 * 299.99619 * 14 12 11 31 31 H 1.08997 * 109.47263 * 299.99867 * 15 14 12 32 32 H 1.09001 * 109.47196 * 179.97438 * 15 14 12 33 33 H 1.09007 * 109.47456 * 179.97438 * 16 15 14 34 34 H 1.09007 * 109.47371 * 60.00254 * 16 15 14 35 35 H 1.08997 * 109.46945 * 299.99842 * 17 16 15 36 36 H 1.09003 * 109.47030 * 180.02562 * 17 16 15 37 37 H 1.08994 * 115.54690 * 279.51036 * 20 18 12 38 38 H 1.09000 * 117.50039 * 359.97438 * 21 20 18 39 39 H 1.09003 * 117.49738 * 145.01916 * 21 20 18 40 40 H 1.09003 * 117.49771 * 214.98239 * 22 20 18 41 41 H 1.09003 * 117.50415 * 359.97400 * 22 20 18 42 42 H 1.09000 * 117.49489 * 214.96599 * 23 9 7 43 43 H 1.08998 * 117.49884 * 359.97438 * 23 9 7 44 44 H 1.09001 * 117.49915 * 252.51208 * 24 23 9 45 45 H 1.08999 * 117.52366 * 107.48036 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4214 2.0898 -1.3973 5 1 1.4863 2.6297 0.7740 6 1 3.5824 1.4195 0.6235 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0033 9 6 3.5115 -1.1942 0.0026 10 6 4.1740 -0.5676 -1.2259 11 7 4.3737 -1.5981 -2.2535 12 6 5.0905 -1.0524 -3.4139 13 1 5.8633 -0.3637 -3.0727 14 6 4.1059 -0.3071 -4.3173 15 6 4.8525 0.2618 -5.5255 16 6 5.4993 -0.8815 -6.3099 17 6 6.4839 -1.6269 -5.4066 18 6 5.7368 -2.1961 -4.1982 19 1 4.9639 -2.8849 -4.5395 20 6 6.7214 -2.9415 -3.2949 21 6 6.6652 -4.4704 -3.2987 22 6 6.1475 -3.6889 -2.0896 23 6 4.2155 -1.0217 1.3501 24 6 4.2165 -2.3849 0.6554 25 1 -0.4850 0.8400 0.0004 26 1 5.1380 -0.1450 -0.9429 27 1 3.5337 0.2208 -1.6215 28 1 3.4941 -2.0070 -2.5313 29 1 3.6455 0.5077 -3.7585 30 1 3.3331 -0.9958 -4.6586 31 1 5.6251 0.9506 -5.1839 32 1 4.1510 0.7924 -6.1693 33 1 6.0308 -0.4763 -7.1710 34 1 4.7267 -1.5704 -6.6517 35 1 7.2564 -0.9381 -5.0650 36 1 6.9450 -2.4411 -5.9657 37 1 7.6989 -2.4737 -3.1783 38 1 5.9266 -4.9453 -3.9444 39 1 7.6061 -5.0089 -3.1847 40 1 6.7476 -3.7132 -1.1800 41 1 5.0685 -3.6494 -1.9399 42 1 5.1507 -0.4619 1.3613 43 1 3.5886 -0.9078 2.2345 44 1 3.5903 -3.1681 1.0827 45 1 5.1521 -2.7222 0.2093 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430728847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:11 Heat of formation + Delta-G solvation = 15.168981 kcal Electronic energy + Delta-G solvation = -21281.120947 eV Core-core repulsion = 18491.364190 eV Total energy + Delta-G solvation = -2789.756757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54152 -38.65488 -37.06141 -35.03072 -34.23613 -31.39195 -30.07917 -28.02089 -25.79886 -24.05948 -23.17845 -22.93844 -22.29881 -21.13423 -20.99160 -20.50872 -18.24815 -16.96516 -16.84500 -16.05694 -15.78300 -15.58586 -15.29330 -15.06841 -14.85828 -14.50394 -14.13193 -13.98238 -13.73812 -13.45319 -13.15689 -12.86267 -12.61176 -12.52914 -12.11429 -12.07506 -12.01828 -11.93797 -11.86300 -11.56154 -11.39483 -11.24367 -11.18676 -10.87082 -10.79701 -10.58189 -10.40450 -10.18425 -8.93287 -8.29271 -6.32866 1.28759 1.35393 1.48745 2.34988 2.99984 3.14903 3.24690 3.66617 3.72094 3.90500 4.14583 4.16046 4.19818 4.27425 4.36384 4.45731 4.47038 4.53644 4.57821 4.61762 4.67987 4.73709 4.75966 4.81448 4.87814 4.96210 5.01472 5.02567 5.05202 5.17941 5.21397 5.24817 5.28491 5.36235 5.41017 5.43923 5.47907 5.51388 5.61844 5.64718 5.75705 5.82186 6.34868 6.36600 6.58136 6.78127 7.34630 8.86155 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.007270 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.557295 B = 3850.497178 C = 4816.804506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.022 3.978 3 Si 0.934 3.066 4 H -0.278 1.278 5 H -0.301 1.301 6 H -0.229 1.229 7 C -0.478 4.478 8 H 0.030 0.970 9 C -0.018 4.018 10 C 0.105 3.895 11 N -0.657 5.657 12 C 0.097 3.903 13 H 0.069 0.931 14 C -0.152 4.152 15 C -0.112 4.112 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.036 4.036 19 H 0.059 0.941 20 C -0.137 4.137 21 C -0.186 4.186 22 C -0.160 4.160 23 C -0.196 4.196 24 C -0.146 4.146 25 H 0.263 0.737 26 H 0.061 0.939 27 H 0.005 0.995 28 H 0.335 0.665 29 H 0.034 0.966 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.350 -2.318 -11.287 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.175 4.175 3 Si 0.760 3.240 4 H -0.205 1.205 5 H -0.228 1.228 6 H -0.151 1.151 7 C -0.516 4.516 8 H 0.048 0.952 9 C -0.019 4.019 10 C -0.025 4.025 11 N -0.285 5.285 12 C -0.013 4.013 13 H 0.087 0.913 14 C -0.191 4.191 15 C -0.150 4.150 16 C -0.152 4.152 17 C -0.143 4.143 18 C -0.055 4.055 19 H 0.078 0.922 20 C -0.155 4.155 21 C -0.223 4.223 22 C -0.198 4.198 23 C -0.234 4.234 24 C -0.183 4.183 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.023 0.977 28 H 0.152 0.848 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.774 -2.473 -10.968 20.193 hybrid contribution -1.436 1.426 0.008 2.024 sum 15.337 -1.048 -10.961 18.880 Atomic orbital electron populations 1.70048 1.08236 1.27771 1.52999 1.25721 0.95080 1.02607 0.94096 0.85972 0.80945 0.79029 0.78043 1.20464 1.22837 1.15118 1.20593 0.89602 0.92332 1.49076 0.95182 1.19224 0.91540 1.00872 0.90280 1.21530 0.96798 0.92202 0.91945 1.60766 1.25952 1.31176 1.10574 1.21616 0.95115 0.95293 0.89301 0.91266 1.22288 0.99104 0.99723 0.97981 1.21461 0.99364 0.98245 0.95904 1.21522 0.98666 0.96940 0.98073 1.21520 0.97662 0.99856 0.95213 1.20618 0.95931 0.95183 0.93726 0.92223 1.22039 0.99445 0.92969 1.01028 1.23025 1.02778 0.93653 1.02797 1.22928 1.02164 1.02982 0.91680 1.23087 1.01492 1.01504 0.97345 1.22644 1.01801 0.90341 1.03542 0.92799 0.92077 0.97748 0.84763 0.94715 0.92578 0.91770 0.92070 0.90464 0.92306 0.91651 0.90683 0.88461 0.89540 0.88667 0.90279 0.88027 0.89215 0.91389 0.91662 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 2 C 0.02 1.27 5.46 84.66 0.46 1.73 16 3 Si 0.93 44.84 24.73 68.60 1.70 46.54 16 4 H -0.28 -13.03 7.06 99.48 0.70 -12.33 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.23 -10.00 6.02 99.48 0.60 -9.40 16 7 C -0.48 -26.87 9.42 25.60 0.24 -26.63 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 9 C -0.02 -0.81 1.00 -52.93 -0.05 -0.86 16 10 C 0.10 4.12 4.49 86.30 0.39 4.51 16 11 N -0.66 -22.00 3.06 -491.58 -1.51 -23.51 16 12 C 0.10 2.69 1.90 44.91 0.09 2.78 16 13 H 0.07 1.96 7.80 -2.39 -0.02 1.94 16 14 C -0.15 -4.31 5.17 30.59 0.16 -4.16 16 15 C -0.11 -2.45 5.92 30.59 0.18 -2.27 16 16 C -0.11 -2.08 5.92 30.59 0.18 -1.90 16 17 C -0.10 -1.92 5.21 30.61 0.16 -1.76 16 18 C -0.04 -0.82 2.09 -10.78 -0.02 -0.84 16 19 H 0.06 1.49 7.94 -2.38 -0.02 1.47 16 20 C -0.14 -3.12 5.07 -10.80 -0.05 -3.17 16 21 C -0.19 -4.00 10.18 30.59 0.31 -3.69 16 22 C -0.16 -4.15 8.29 30.59 0.25 -3.89 16 23 C -0.20 -8.02 8.63 30.60 0.26 -7.76 16 24 C -0.15 -5.74 9.75 30.60 0.30 -5.44 16 25 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.06 2.24 7.71 -2.39 -0.02 2.22 16 27 H 0.00 0.20 4.28 -2.39 -0.01 0.19 16 28 H 0.33 12.48 8.58 -89.70 -0.77 11.71 16 29 H 0.03 1.16 7.29 -2.39 -0.02 1.15 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 2.02 8.02 -2.39 -0.02 2.00 16 41 H 0.10 3.10 6.36 -2.39 -0.02 3.08 16 42 H 0.09 3.24 8.03 -2.39 -0.02 3.22 16 43 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 44 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.11 3.68 6.99 -2.39 -0.02 3.67 16 Total: -1.00 -61.22 337.47 3.40 -57.82 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.06 Total: 31.77 kcal Atomic # 6 Polarization: -56.21 SS G_CDS: 2.85 Total: -53.35 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.21 Total: -82.77 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.70 Total: 46.54 kcal Total: -61.22 3.40 -57.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430728847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.988 kcal (2) G-P(sol) polarization free energy of solvation -61.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds