Wall clock time and date at job start Mon Mar 30 2020 06:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47190 * 270.00144 * 3 2 1 5 5 H 1.48499 * 109.47294 * 29.99824 * 3 2 1 6 6 H 1.48493 * 109.47178 * 149.99905 * 3 2 1 7 7 C 1.37876 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99804 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99953 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.67245 * 61.78229 * 9 7 2 11 11 C 1.54893 * 110.75614 * 298.54600 * 9 7 2 12 12 C 1.54268 * 104.19689 * 203.74375 * 11 9 7 13 13 C 1.53884 * 106.59867 * 23.60860 * 12 11 9 14 14 H 1.08998 * 110.03111 * 240.66697 * 13 12 11 15 15 N 1.46899 * 110.02955 * 119.28422 * 13 12 11 16 16 C 1.46898 * 111.00044 * 86.45344 * 15 13 12 17 17 H 1.09009 * 110.07198 * 33.45874 * 16 15 13 18 18 C 1.54941 * 110.07912 * 271.90438 * 16 15 13 19 19 C 1.54955 * 103.99911 * 217.28013 * 18 16 15 20 20 C 1.55063 * 103.01918 * 37.54222 * 19 18 16 21 21 C 1.53176 * 110.09514 * 154.99680 * 16 15 13 22 22 C 1.53025 * 115.34682 * 249.26638 * 21 16 15 23 23 C 1.53918 * 86.84922 * 92.16828 * 22 21 16 24 24 C 1.53016 * 115.36274 * 349.57569 * 21 16 15 25 25 C 1.54263 * 106.59680 * 0.02562 * 13 12 11 26 26 H 0.97004 * 120.00337 * 0.02562 * 1 2 3 27 27 H 1.09000 * 110.48382 * 85.06934 * 11 9 7 28 28 H 1.08998 * 110.59776 * 322.47977 * 11 9 7 29 29 H 1.09008 * 110.03246 * 264.32957 * 12 11 9 30 30 H 1.08999 * 110.03487 * 142.89586 * 12 11 9 31 31 H 1.00900 * 111.00059 * 322.50430 * 15 13 12 32 32 H 1.09002 * 110.68057 * 98.62508 * 18 16 15 33 33 H 1.08994 * 110.49826 * 335.84974 * 18 16 15 34 34 H 1.09002 * 110.73799 * 279.10807 * 19 18 16 35 35 H 1.09001 * 110.73447 * 155.97543 * 19 18 16 36 36 H 1.08993 * 110.52378 * 81.23297 * 20 19 18 37 37 H 1.08999 * 110.52545 * 203.84502 * 20 19 18 38 38 H 1.09002 * 113.64482 * 206.65576 * 22 21 16 39 39 H 1.08995 * 113.64984 * 337.67392 * 22 21 16 40 40 H 1.09003 * 113.59026 * 270.27153 * 23 22 21 41 41 H 1.09005 * 113.58911 * 139.44734 * 23 22 21 42 42 H 1.09000 * 113.65485 * 22.33743 * 24 21 16 43 43 H 1.08993 * 113.64992 * 153.26657 * 24 21 16 44 44 H 1.09007 * 110.48946 * 95.06493 * 25 13 12 45 45 H 1.09001 * 110.48832 * 217.71265 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6407 -2.5910 -0.8990 11 6 0.3777 -2.6287 1.2721 12 6 0.1831 -4.1493 1.4442 13 6 1.3582 -4.8278 0.7183 14 1 0.9841 -5.4664 -0.0818 15 7 2.1457 -5.6230 1.6699 16 6 1.5874 -6.9740 1.8156 17 1 1.1579 -7.3053 0.8701 18 6 0.5061 -6.9858 2.9252 19 6 0.7035 -8.3535 3.6264 20 6 2.2441 -8.5298 3.6208 21 6 2.6792 -7.9486 2.2677 22 6 3.1072 -8.9828 1.2241 23 6 4.1980 -7.9816 0.8034 24 6 4.1067 -7.3993 2.2252 25 6 2.2261 -3.6958 0.1311 26 1 -0.4851 0.8401 -0.0004 27 1 -0.5833 -2.1352 1.1271 28 1 0.8941 -2.2100 2.1358 29 1 -0.7612 -4.4581 0.9956 30 1 0.1972 -4.4102 2.5024 31 1 2.2083 -5.1594 2.5638 32 1 -0.4916 -6.9203 2.4912 33 1 0.6716 -6.1695 3.6282 34 1 0.2218 -9.1506 3.0601 35 1 0.3223 -8.3225 4.6471 36 1 2.6957 -7.9704 4.4400 37 1 2.5083 -9.5851 3.6885 38 1 3.5011 -9.9027 1.6562 39 1 2.3576 -9.1623 0.4534 40 1 3.8771 -7.2878 0.0263 41 1 5.1580 -8.4491 0.5842 42 1 4.1576 -6.3109 2.2561 43 1 4.7798 -7.8753 2.9382 44 1 3.0430 -3.4501 0.8097 45 1 2.6139 -3.9806 -0.8470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449444583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:47 Heat of formation + Delta-G solvation = -15.807981 kcal Electronic energy + Delta-G solvation = -20904.455558 eV Core-core repulsion = 18113.355539 eV Total energy + Delta-G solvation = -2791.100019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29172 -39.08082 -36.14600 -34.90234 -33.32082 -29.82582 -29.03670 -27.96268 -26.65991 -26.31509 -25.12186 -22.32296 -21.70246 -21.06926 -20.77465 -18.85220 -18.38859 -16.86734 -16.64126 -16.48490 -16.03815 -15.75142 -15.31272 -14.61777 -14.48327 -14.16277 -13.88973 -13.71107 -13.50679 -13.29829 -13.08244 -12.89742 -12.71908 -12.62771 -12.33229 -12.17430 -11.89822 -11.74217 -11.61402 -11.53975 -11.48189 -11.27651 -11.15685 -10.83697 -10.78525 -10.77029 -10.70018 -10.44864 -9.09037 -8.09905 -6.19863 1.40884 1.41430 1.51899 2.44265 3.20114 3.25273 3.59634 3.75249 3.87194 4.04942 4.11477 4.18811 4.20377 4.28333 4.39491 4.41289 4.58738 4.64142 4.79005 4.81918 4.83428 4.92992 4.99392 5.01671 5.06594 5.07749 5.10152 5.13031 5.19970 5.21708 5.25834 5.29247 5.30741 5.43173 5.47178 5.49872 5.59645 5.67316 5.68889 5.80756 5.95697 6.03047 6.36683 6.43163 6.61387 6.90974 7.47592 8.98200 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.004501 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.736152 B = 6220.015349 C = 6687.941633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.037 3.963 10 H -0.005 1.005 11 C -0.089 4.089 12 C -0.139 4.139 13 C 0.101 3.899 14 H 0.069 0.931 15 N -0.666 5.666 16 C 0.106 3.894 17 H 0.068 0.932 18 C -0.150 4.150 19 C -0.117 4.117 20 C -0.108 4.108 21 C -0.074 4.074 22 C -0.122 4.122 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.091 4.091 26 H 0.259 0.741 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.341 0.659 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 -18.925 6.969 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.019 3.981 10 H 0.013 0.987 11 C -0.128 4.128 12 C -0.178 4.178 13 C -0.009 4.009 14 H 0.087 0.913 15 N -0.295 5.295 16 C -0.004 4.004 17 H 0.087 0.913 18 C -0.190 4.190 19 C -0.155 4.155 20 C -0.145 4.145 21 C -0.075 4.075 22 C -0.160 4.160 23 C -0.173 4.173 24 C -0.160 4.160 25 C -0.129 4.129 26 H 0.068 0.932 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.160 0.840 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.023 -18.997 6.492 20.474 hybrid contribution -0.781 1.629 0.216 1.819 sum 3.242 -17.368 6.708 18.898 Atomic orbital electron populations 1.70099 1.07226 1.27013 1.51685 1.25750 0.95635 1.02345 0.94919 0.85653 0.78814 0.79587 0.78206 1.20197 1.20973 1.19232 1.21524 0.92901 0.92161 1.50225 0.93090 1.19576 0.93018 0.92598 0.92956 0.98707 1.22010 0.99075 0.93487 0.98191 1.22900 0.98715 0.96342 0.99879 1.22077 0.91267 0.93501 0.94094 0.91307 1.60689 1.51946 1.02568 1.14340 1.22021 0.92252 0.88709 0.97431 0.91336 1.23243 0.99092 0.98564 0.98054 1.22428 0.96431 0.96233 1.00434 1.22272 0.95279 1.00920 0.96036 1.21836 0.94609 0.95558 0.95454 1.22923 0.98251 0.96871 0.97926 1.22706 0.98689 0.98409 0.97482 1.22691 0.95211 1.01609 0.96528 1.22249 0.97756 0.94165 0.98708 0.93237 0.94790 0.95236 0.92980 0.91513 0.83964 0.92183 0.91983 0.91165 0.91168 0.91672 0.90573 0.89031 0.92273 0.91791 0.91782 0.90991 0.90412 0.92663 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.67 12.02 21.45 0.26 -54.41 16 2 C 0.01 0.68 5.33 84.65 0.45 1.13 16 3 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -30.00 8.54 25.60 0.22 -29.79 16 8 H 0.05 2.85 7.78 -2.91 -0.02 2.83 16 9 C 0.04 1.91 2.82 -10.24 -0.03 1.89 16 10 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 11 C -0.09 -4.25 5.56 31.67 0.18 -4.07 16 12 C -0.14 -5.06 5.98 31.32 0.19 -4.87 16 13 C 0.10 3.43 3.23 45.64 0.15 3.58 16 14 H 0.07 2.30 7.46 -2.39 -0.02 2.28 16 15 N -0.67 -18.76 4.11 -462.07 -1.90 -20.66 16 16 C 0.11 2.49 2.80 45.64 0.13 2.62 16 17 H 0.07 1.74 7.04 -2.38 -0.02 1.72 16 18 C -0.15 -3.22 5.34 31.93 0.17 -3.05 16 19 C -0.12 -2.02 6.90 31.97 0.22 -1.80 16 20 C -0.11 -1.83 6.20 31.49 0.20 -1.63 16 21 C -0.07 -1.49 1.12 -51.92 -0.06 -1.54 16 22 C -0.12 -2.29 7.28 30.91 0.23 -2.07 16 23 C -0.14 -2.93 7.92 31.21 0.25 -2.68 16 24 C -0.12 -2.66 7.02 30.91 0.22 -2.44 16 25 C -0.09 -3.79 5.95 31.68 0.19 -3.60 16 26 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.03 1.79 7.37 -2.39 -0.02 1.77 16 28 H 0.03 1.45 8.04 -2.39 -0.02 1.43 16 29 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.07 2.16 6.14 -2.39 -0.01 2.14 16 31 H 0.34 9.71 7.56 -89.69 -0.68 9.04 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.40 6.90 -2.39 -0.02 1.39 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 37 H 0.08 1.10 7.81 -2.39 -0.02 1.08 16 38 H 0.09 1.42 7.94 -2.39 -0.02 1.41 16 39 H 0.06 1.14 7.86 -2.39 -0.02 1.12 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.07 1.85 6.65 -2.39 -0.02 1.84 16 43 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 44 H 0.05 2.36 7.95 -2.38 -0.02 2.34 16 45 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -59.35 335.21 3.33 -56.01 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.26 Total: 20.79 kcal Atomic # 6 Polarization: -51.01 SS G_CDS: 2.69 Total: -48.33 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -1.64 Total: -75.06 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -59.35 3.33 -56.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449444583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.205 kcal (2) G-P(sol) polarization free energy of solvation -59.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds