Wall clock time and date at job start Mon Mar 30 2020 07:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76195 * 103.00340 * 2 1 4 4 C 1.32852 * 124.38555 * 180.02562 * 3 2 1 5 5 C 1.45391 * 114.70875 * 179.72750 * 4 3 2 6 6 C 1.39471 * 111.91615 * 0.42361 * 5 4 3 7 7 S 1.75291 * 124.38080 * 359.97264 * 3 2 1 8 8 C 1.42030 * 119.67154 * 179.80847 * 6 5 4 9 9 C 1.40969 * 120.10033 * 179.72512 * 8 6 5 10 10 H 1.07996 * 119.99844 * 330.01368 * 9 8 6 11 11 C 1.39905 * 119.99922 * 150.01881 * 9 8 6 12 12 N 1.30881 * 119.99761 * 161.76337 * 11 9 8 13 13 Si 1.86795 * 120.00038 * 341.76225 * 11 9 8 14 14 H 1.48500 * 109.47337 * 95.41353 * 13 11 9 15 15 H 1.48505 * 109.46980 * 215.40996 * 13 11 9 16 16 H 1.48499 * 109.47080 * 335.40991 * 13 11 9 17 17 C 1.40505 * 119.80167 * 359.74360 * 8 6 5 18 18 C 1.37834 * 119.88573 * 359.97438 * 17 8 6 19 19 C 1.37856 * 120.73702 * 0.02562 * 18 17 8 20 20 C 1.50701 * 119.54559 * 179.97438 * 19 18 17 21 21 H 1.09003 * 109.46851 * 300.00523 * 1 2 3 22 22 H 1.09001 * 109.46740 * 59.99734 * 1 2 3 23 23 H 1.08993 * 109.47457 * 180.02562 * 1 2 3 24 24 H 1.08000 * 122.64280 * 359.94054 * 4 3 2 25 25 H 0.97008 * 120.00108 * 179.97438 * 12 11 9 26 26 H 1.07992 * 120.05449 * 179.97438 * 17 8 6 27 27 H 1.08003 * 119.62993 * 179.97438 * 18 17 8 28 28 H 1.09002 * 109.46707 * 90.00102 * 20 19 18 29 29 H 1.08992 * 109.47717 * 330.00050 * 20 19 18 30 30 H 1.09004 * 109.46609 * 209.99215 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 3.4476 2.2011 -0.0005 5 6 3.5319 3.6526 -0.0067 6 6 2.2704 4.2474 -0.0013 7 16 1.0236 3.0068 -0.0007 8 6 2.1608 5.6635 -0.0020 9 6 0.8903 6.2742 -0.0025 10 1 0.0527 5.7777 -0.4698 11 6 0.7144 7.5234 0.6023 12 7 -0.3333 8.2509 0.3088 13 14 1.9748 8.1531 1.8288 14 1 2.9473 9.0327 1.1318 15 1 1.2859 8.9238 2.8949 16 1 2.6932 7.0033 2.4347 17 6 3.3225 6.4538 -0.0027 18 6 4.5625 5.8521 -0.0021 19 6 4.6791 4.4784 -0.0014 20 6 6.0483 3.8489 -0.0013 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 4.3216 1.5667 0.0000 25 1 -0.4555 9.1169 0.7284 26 1 3.2439 7.5309 -0.0037 27 1 5.4528 6.4636 -0.0030 28 1 6.3786 3.6976 1.0264 29 1 6.7502 4.5053 -0.5155 30 1 6.0064 2.8881 -0.5145 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396291615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:40 Heat of formation + Delta-G solvation = 20.907753 kcal Electronic energy + Delta-G solvation = -14987.152438 eV Core-core repulsion = 12577.932329 eV Total energy + Delta-G solvation = -2409.220109 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 264.034 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.45499 -34.85212 -33.53180 -31.76321 -29.14485 -28.50484 -27.64966 -23.89247 -22.75372 -20.85887 -20.23160 -17.58449 -16.74457 -15.74672 -15.22161 -14.73174 -14.47792 -13.79488 -13.74159 -13.49032 -13.19155 -13.02128 -12.54609 -12.20241 -12.00001 -11.83970 -11.66849 -11.32070 -11.04978 -10.90514 -10.53045 -10.19199 -10.02307 -9.90645 -9.56902 -9.29622 -8.61460 -8.08428 -7.12697 -7.07419 -6.80497 -4.61127 1.52810 1.64371 1.99185 2.37410 2.80867 2.96976 2.98851 3.09250 3.12492 3.26999 3.87427 4.33276 5.11725 5.13875 5.16089 5.68935 5.72750 5.80105 5.85282 6.10210 6.18726 6.22577 6.34881 6.42417 6.53279 6.73004 7.04612 7.11259 7.22997 7.52098 7.69417 7.86605 8.14282 8.38587 8.57815 9.88443 Molecular weight = 264.03amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.007739 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.544204 B = 3617.080615 C = 4712.844876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.085 6.085 3 C -0.200 4.200 4 C -0.094 4.094 5 C -0.024 4.024 6 C -0.192 4.192 7 S 0.081 5.919 8 C 0.126 3.874 9 C -0.439 4.439 10 H 0.093 0.907 11 C 0.086 3.914 12 N -0.796 5.796 13 Si 0.913 3.087 14 H -0.267 1.267 15 H -0.289 1.289 16 H -0.242 1.242 17 C -0.243 4.243 18 C -0.058 4.058 19 C -0.188 4.188 20 C -0.086 4.086 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.106 0.894 24 H 0.132 0.868 25 H 0.289 0.711 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.641 -8.907 0.854 9.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.151 5.849 3 C -0.427 4.427 4 C -0.133 4.133 5 C -0.033 4.033 6 C -0.309 4.309 7 S 0.342 5.658 8 C 0.120 3.880 9 C -0.466 4.466 10 H 0.111 0.889 11 C -0.135 4.135 12 N -0.419 5.419 13 Si 0.739 3.261 14 H -0.193 1.193 15 H -0.216 1.216 16 H -0.165 1.165 17 C -0.266 4.266 18 C -0.078 4.078 19 C -0.192 4.192 20 C -0.143 4.143 21 H 0.105 0.895 22 H 0.104 0.896 23 H 0.125 0.875 24 H 0.150 0.850 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.119 0.881 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.429 -9.756 0.855 10.090 hybrid contribution 1.010 1.643 0.452 1.980 sum 3.439 -8.113 1.307 8.908 Atomic orbital electron populations 1.23643 0.95006 1.06655 1.06422 1.84852 1.06065 1.00040 1.93932 1.25360 1.01516 1.00385 1.15435 1.20623 0.95256 0.93701 1.03763 1.18662 0.92836 0.90266 1.01534 1.22532 0.93782 0.96895 1.17711 1.83666 1.07846 0.93599 1.80662 1.17038 0.93661 0.87843 0.89470 1.19435 0.95312 1.01139 1.30739 0.88935 1.26192 0.96054 0.94922 0.96313 1.69707 1.27107 1.10235 1.34812 0.86255 0.79999 0.80114 0.79760 1.19287 1.21614 1.16459 1.20792 0.91992 0.98027 1.15807 1.20294 0.96424 0.93273 0.97775 1.18953 0.92312 0.92386 1.15552 1.20421 0.94132 0.99543 1.00231 0.89549 0.89566 0.87520 0.85035 0.90068 0.87463 0.88132 0.93378 0.93138 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.75 101.05 0.99 -0.78 16 2 S -0.09 -1.27 22.69 -107.50 -2.44 -3.71 16 3 C -0.20 -3.75 6.58 28.88 0.19 -3.56 16 4 C -0.09 -1.83 9.69 -38.59 -0.37 -2.20 16 5 C -0.02 -0.53 5.96 -105.41 -0.63 -1.15 16 6 C -0.19 -4.59 6.36 -37.67 -0.24 -4.83 16 7 S 0.08 1.67 21.76 -107.50 -2.34 -0.67 16 8 C 0.13 3.19 5.12 -106.56 -0.55 2.65 16 9 C -0.44 -11.64 9.31 -37.92 -0.35 -12.00 16 10 H 0.09 2.59 8.00 -52.49 -0.42 2.17 16 11 C 0.09 2.20 5.40 -17.33 -0.09 2.10 16 12 N -0.80 -20.57 13.93 55.55 0.77 -19.79 16 13 Si 0.91 20.32 24.52 -169.99 -4.17 16.15 16 14 H -0.27 -5.70 6.71 56.52 0.38 -5.32 16 15 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.24 -5.58 6.87 56.52 0.39 -5.19 16 17 C -0.24 -5.77 7.15 -38.88 -0.28 -6.05 16 18 C -0.06 -1.24 9.59 -39.87 -0.38 -1.62 16 19 C -0.19 -3.90 5.96 -103.58 -0.62 -4.52 16 20 C -0.09 -1.41 9.83 36.01 0.35 -1.06 16 21 H 0.09 1.05 8.14 -51.92 -0.42 0.62 16 22 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 23 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.13 2.25 7.51 -52.49 -0.39 1.85 16 25 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 26 H 0.11 2.50 4.73 -52.49 -0.25 2.25 16 27 H 0.10 1.84 8.06 -52.48 -0.42 1.41 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 30 H 0.05 0.76 7.22 -51.93 -0.37 0.39 16 LS Contribution 278.73 15.07 4.20 4.20 Total: -1.00 -27.17 278.73 -9.09 -36.26 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.14 Total: 0.58 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: -1.98 Total: -33.02 kcal Atomic # 7 Polarization: -20.57 SS G_CDS: 0.77 Total: -19.79 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.17 Total: 16.15 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -4.78 Total: -4.38 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.17 -9.09 -36.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.172 kcal (2) G-P(sol) polarization free energy of solvation -27.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds