Wall clock time and date at job start Mon Mar 30 2020 07:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76195 * 103.00340 * 2 1 4 4 C 1.32852 * 124.38555 * 180.02562 * 3 2 1 5 5 C 1.45391 * 114.70875 * 179.72750 * 4 3 2 6 6 C 1.39471 * 111.91615 * 0.42361 * 5 4 3 7 7 S 1.75291 * 124.38080 * 359.97264 * 3 2 1 8 8 C 1.42030 * 119.67154 * 179.80847 * 6 5 4 9 9 C 1.40969 * 120.10033 * 179.72512 * 8 6 5 10 10 H 1.07996 * 119.99844 * 330.01368 * 9 8 6 11 11 C 1.39905 * 119.99922 * 150.01881 * 9 8 6 12 12 N 1.30881 * 119.99761 * 161.76337 * 11 9 8 13 13 Si 1.86795 * 120.00038 * 341.76225 * 11 9 8 14 14 H 1.48500 * 109.47337 * 95.41353 * 13 11 9 15 15 H 1.48505 * 109.46980 * 215.40996 * 13 11 9 16 16 H 1.48499 * 109.47080 * 335.40991 * 13 11 9 17 17 C 1.40505 * 119.80167 * 359.74360 * 8 6 5 18 18 C 1.37834 * 119.88573 * 359.97438 * 17 8 6 19 19 C 1.37856 * 120.73702 * 0.02562 * 18 17 8 20 20 C 1.50701 * 119.54559 * 179.97438 * 19 18 17 21 21 H 1.09003 * 109.46851 * 300.00523 * 1 2 3 22 22 H 1.09001 * 109.46740 * 59.99734 * 1 2 3 23 23 H 1.08993 * 109.47457 * 180.02562 * 1 2 3 24 24 H 1.08000 * 122.64280 * 359.94054 * 4 3 2 25 25 H 0.97008 * 120.00108 * 179.97438 * 12 11 9 26 26 H 1.07992 * 120.05449 * 179.97438 * 17 8 6 27 27 H 1.08003 * 119.62993 * 179.97438 * 18 17 8 28 28 H 1.09002 * 109.46707 * 90.00102 * 20 19 18 29 29 H 1.08992 * 109.47717 * 330.00050 * 20 19 18 30 30 H 1.09004 * 109.46609 * 209.99215 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 3.4476 2.2011 -0.0005 5 6 3.5319 3.6526 -0.0067 6 6 2.2704 4.2474 -0.0013 7 16 1.0236 3.0068 -0.0007 8 6 2.1608 5.6635 -0.0020 9 6 0.8903 6.2742 -0.0025 10 1 0.0527 5.7777 -0.4698 11 6 0.7144 7.5234 0.6023 12 7 -0.3333 8.2509 0.3088 13 14 1.9748 8.1531 1.8288 14 1 2.9473 9.0327 1.1318 15 1 1.2859 8.9238 2.8949 16 1 2.6932 7.0033 2.4347 17 6 3.3225 6.4538 -0.0027 18 6 4.5625 5.8521 -0.0021 19 6 4.6791 4.4784 -0.0014 20 6 6.0483 3.8489 -0.0013 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 4.3216 1.5667 0.0000 25 1 -0.4555 9.1169 0.7284 26 1 3.2439 7.5309 -0.0037 27 1 5.4528 6.4636 -0.0030 28 1 6.3786 3.6976 1.0264 29 1 6.7502 4.5053 -0.5155 30 1 6.0064 2.8881 -0.5145 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396291615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:39 Heat of formation + Delta-G solvation = 7.025464 kcal Electronic energy + Delta-G solvation = -14987.754419 eV Core-core repulsion = 12577.932329 eV Total energy + Delta-G solvation = -2409.822090 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 264.034 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.14567 -36.56383 -35.23946 -33.46631 -30.45728 -29.83759 -29.29026 -25.55873 -24.40979 -22.52960 -21.87068 -19.37904 -18.31789 -17.35779 -16.89324 -16.29935 -15.98036 -15.37037 -15.09414 -15.00934 -14.63699 -14.49798 -13.85022 -13.70553 -13.45713 -13.40688 -13.13854 -12.91411 -12.68386 -12.57205 -12.19790 -11.82954 -11.67412 -11.47189 -11.15010 -11.07472 -10.24001 -9.70567 -9.00225 -8.72048 -8.24985 -6.52996 -0.09006 0.38712 0.50715 0.61543 1.20464 1.30810 1.33731 1.38129 1.51057 1.55674 2.07621 2.53122 3.30584 4.13146 4.18209 4.21622 4.25023 4.34175 4.56265 4.71053 4.77592 4.80357 4.85424 5.01071 5.01259 5.13247 5.34490 5.40410 5.54781 5.72474 5.95594 6.06521 6.27605 6.55931 6.67948 8.07593 Molecular weight = 264.03amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.007739 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.544204 B = 3617.080615 C = 4712.844876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.060 6.060 3 C -0.195 4.195 4 C -0.105 4.105 5 C -0.040 4.040 6 C -0.227 4.227 7 S 0.064 5.936 8 C 0.104 3.896 9 C -0.476 4.476 10 H 0.056 0.944 11 C 0.052 3.948 12 N -0.838 5.838 13 Si 0.965 3.035 14 H -0.250 1.250 15 H -0.275 1.275 16 H -0.257 1.257 17 C -0.253 4.253 18 C -0.070 4.070 19 C -0.173 4.173 20 C -0.086 4.086 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.143 0.857 24 H 0.161 0.839 25 H 0.297 0.703 26 H 0.107 0.893 27 H 0.137 0.863 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.268 -10.836 1.359 12.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.177 5.823 3 C -0.422 4.422 4 C -0.143 4.143 5 C -0.049 4.049 6 C -0.343 4.343 7 S 0.325 5.675 8 C 0.098 3.902 9 C -0.505 4.505 10 H 0.074 0.926 11 C -0.164 4.164 12 N -0.464 5.464 13 Si 0.787 3.213 14 H -0.175 1.175 15 H -0.202 1.202 16 H -0.181 1.181 17 C -0.276 4.276 18 C -0.089 4.089 19 C -0.177 4.177 20 C -0.142 4.142 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.161 0.839 24 H 0.179 0.821 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.155 0.845 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.063 -11.695 1.350 12.815 hybrid contribution 0.282 1.939 0.235 1.974 sum 5.345 -9.756 1.585 11.236 Atomic orbital electron populations 1.23819 0.92799 1.08964 1.06237 1.84762 1.08388 0.95946 1.93165 1.25796 1.00705 1.02221 1.13440 1.20801 0.96508 0.92646 1.04394 1.19172 0.92543 0.92011 1.01209 1.22892 0.95796 0.97153 1.18507 1.83637 1.08566 0.94192 1.81143 1.17225 0.93670 0.89005 0.90288 1.19326 0.95204 1.02423 1.33524 0.92556 1.26814 0.97631 0.94725 0.97223 1.69728 1.28831 1.11188 1.36617 0.85483 0.78330 0.79300 0.78140 1.17482 1.20185 1.18072 1.20986 0.92687 0.98145 1.15769 1.20719 0.96686 0.94180 0.97316 1.19646 0.94290 0.92383 1.11371 1.20516 0.91497 1.00342 1.01886 0.89761 0.89790 0.83881 0.82134 0.89223 0.87547 0.84521 0.91628 0.90885 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.75 113.37 1.11 -2.08 16 2 S -0.06 -1.60 22.69 -56.49 -1.28 -2.89 16 3 C -0.20 -7.00 6.58 66.64 0.44 -6.56 16 4 C -0.10 -3.83 9.69 22.93 0.22 -3.61 16 5 C -0.04 -1.71 5.96 -20.37 -0.12 -1.83 16 6 C -0.23 -11.02 6.36 23.51 0.15 -10.87 16 7 S 0.06 2.69 21.76 -56.49 -1.23 1.46 16 8 C 0.10 5.43 5.12 -21.12 -0.11 5.32 16 9 C -0.48 -26.91 9.31 23.34 0.22 -26.69 16 10 H 0.06 3.45 8.00 -2.91 -0.02 3.43 16 11 C 0.05 2.79 5.40 85.24 0.46 3.25 16 12 N -0.84 -45.57 13.93 21.82 0.30 -45.26 16 13 Si 0.96 42.59 24.52 68.60 1.68 44.28 16 14 H -0.25 -10.21 6.71 99.48 0.67 -9.54 16 15 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.26 -11.81 6.87 99.48 0.68 -11.13 16 17 C -0.25 -11.99 7.15 22.73 0.16 -11.83 16 18 C -0.07 -2.82 9.59 22.08 0.21 -2.60 16 19 C -0.17 -6.70 5.96 -19.19 -0.11 -6.82 16 20 C -0.09 -2.40 9.83 71.24 0.70 -1.70 16 21 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.16 4.85 7.51 -2.91 -0.02 4.83 16 25 H 0.30 14.40 8.30 -92.70 -0.77 13.63 16 26 H 0.11 4.95 4.73 -2.91 -0.01 4.94 16 27 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.76 8.07 -2.39 -0.02 1.74 16 30 H 0.06 1.64 7.22 -2.39 -0.02 1.62 16 Total: -1.00 -61.62 278.73 3.89 -57.73 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.09 Total: 10.69 kcal Atomic # 6 Polarization: -69.34 SS G_CDS: 3.32 Total: -66.01 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.30 Total: -45.26 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.68 Total: 44.28 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.51 Total: -1.42 kcal Total: -61.62 3.89 -57.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396291615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.754 kcal (2) G-P(sol) polarization free energy of solvation -61.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds