Wall clock time and date at job start Mon Mar 30 2020 06:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36007 * 116.99559 * 2 1 4 4 C 1.38162 * 119.73248 * 359.96278 * 3 2 1 5 5 C 1.38327 * 119.44964 * 179.87137 * 4 3 2 6 6 C 1.37750 * 120.03750 * 0.30661 * 5 4 3 7 7 C 1.50697 * 119.41669 * 180.08822 * 6 5 4 8 8 C 1.39434 * 121.15921 * 0.10950 * 6 5 4 9 9 C 1.38014 * 118.84825 * 359.33540 * 8 6 5 10 10 S 1.76451 * 122.32487 * 180.86854 * 9 8 6 11 11 C 1.81611 * 102.63224 * 346.56597 * 10 9 8 12 12 C 1.53522 * 107.30790 * 46.41459 * 11 10 9 13 13 C 1.50052 * 116.38920 * 178.36126 * 8 6 5 14 14 H 1.08994 * 108.66985 * 278.85493 * 13 8 6 15 15 C 1.50691 * 108.66184 * 36.74358 * 13 8 6 16 16 H 1.08002 * 119.99922 * 246.58118 * 15 13 8 17 17 C 1.37881 * 120.00377 * 66.58499 * 15 13 8 18 18 N 1.31517 * 119.99630 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00468 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47020 * 59.99361 * 19 17 15 21 21 H 1.48496 * 109.47336 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.46994 * 299.99768 * 19 17 15 23 23 H 1.08997 * 109.47213 * 59.99903 * 1 2 3 24 24 H 1.08998 * 109.47015 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46969 * 300.00185 * 1 2 3 26 26 H 1.07998 * 120.27518 * 359.84221 * 4 3 2 27 27 H 1.08001 * 119.97894 * 180.29274 * 5 4 3 28 28 H 1.08997 * 109.46920 * 229.32618 * 7 6 5 29 29 H 1.09003 * 109.47587 * 349.32898 * 7 6 5 30 30 H 1.09007 * 109.47538 * 109.32887 * 7 6 5 31 31 H 1.09000 * 109.89315 * 286.96254 * 11 10 9 32 32 H 1.09009 * 109.94910 * 165.89811 * 11 10 9 33 33 H 1.09003 * 109.55235 * 47.31184 * 12 11 10 34 34 H 1.08996 * 109.55834 * 167.62147 * 12 11 10 35 35 H 0.97002 * 119.99830 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2884 2.3670 -0.0008 5 6 1.9224 3.5965 0.0019 6 6 3.2983 3.6628 -0.0010 7 6 3.9744 5.0096 0.0040 8 6 4.0763 2.5057 -0.0090 9 6 3.4449 1.2786 0.0000 10 16 4.3390 -0.2426 0.0137 11 6 6.0268 0.2851 -0.3999 12 6 6.3481 1.5097 0.4684 13 6 5.5634 2.7023 -0.0500 14 1 5.8616 2.8946 -1.0805 15 6 5.9134 3.9086 0.7825 16 1 6.3132 4.7935 0.3095 17 6 5.7234 3.8828 2.1479 18 7 5.2362 2.8055 2.7237 19 14 6.1567 5.3785 3.1797 20 1 5.3521 6.5418 2.7273 21 1 5.8606 5.0976 4.6074 22 1 7.6014 5.6854 3.0243 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2099 2.3106 -0.0040 27 1 1.3382 4.5049 0.0061 28 1 4.7341 5.0376 -0.7771 29 1 3.2345 5.7884 -0.1807 30 1 4.4438 5.1770 0.9735 31 1 6.0835 0.5534 -1.4548 32 1 6.7312 -0.5182 -0.1833 33 1 6.0656 1.3085 1.5018 34 1 7.4154 1.7245 0.4157 35 1 5.1029 2.7872 3.6843 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267391.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:45 Heat of formation + Delta-G solvation = -2.243241 kcal Electronic energy + Delta-G solvation = -18644.238249 eV Core-core repulsion = 15927.094461 eV Total energy + Delta-G solvation = -2717.143788 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.49337 -37.70134 -34.76453 -32.31237 -30.94062 -29.98143 -27.34218 -27.07031 -25.28119 -23.06709 -22.14642 -20.65319 -19.39349 -17.45972 -16.17281 -15.98434 -15.27969 -15.22664 -14.93182 -14.23429 -13.67112 -13.25375 -13.07467 -12.87011 -12.39337 -12.11311 -12.10696 -11.77257 -11.66595 -11.04099 -10.97886 -10.78827 -10.75154 -10.47864 -10.33743 -10.01937 -9.65280 -9.48751 -9.44902 -8.89534 -8.51854 -8.33300 -7.10862 -6.31695 -6.06271 -4.06295 2.20127 2.37276 2.59549 3.21885 3.29638 3.30924 3.39333 3.87456 4.30027 4.63241 5.13364 5.35555 5.45437 5.54984 5.71947 5.77200 5.82223 5.92984 6.14989 6.23085 6.31851 6.40390 6.47533 6.71974 6.90596 6.93650 6.94065 7.01911 7.18370 7.29204 7.48252 7.67719 7.69628 7.87177 7.97742 8.10558 8.25221 8.74746 9.42260 10.93027 Molecular weight = 264.09amu Principal moments of inertia in cm(-1) A = 0.021074 B = 0.009349 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.311836 B = 2994.310851 C = 3689.285864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.313 6.313 3 C 0.120 3.880 4 C -0.219 4.219 5 C -0.106 4.106 6 C -0.078 4.078 7 C -0.092 4.092 8 C 0.028 3.972 9 C -0.103 4.103 10 S -0.135 6.135 11 C -0.107 4.107 12 C -0.117 4.117 13 C 0.069 3.931 14 H 0.035 0.965 15 C -0.513 4.513 16 H 0.064 0.936 17 C 0.066 3.934 18 N -0.864 5.864 19 Si 0.881 3.119 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.048 0.952 24 H 0.090 0.910 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.013 0.987 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.055 0.945 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 -2.066 -4.635 7.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.227 6.227 3 C 0.071 3.929 4 C -0.239 4.239 5 C -0.127 4.127 6 C -0.080 4.080 7 C -0.148 4.148 8 C 0.022 3.978 9 C -0.215 4.215 10 S 0.105 5.895 11 C -0.256 4.256 12 C -0.156 4.156 13 C 0.050 3.950 14 H 0.053 0.947 15 C -0.551 4.551 16 H 0.082 0.918 17 C -0.138 4.138 18 N -0.500 5.500 19 Si 0.708 3.292 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.066 0.934 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.134 0.866 27 H 0.128 0.872 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.123 0.877 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.267 -3.531 -4.233 7.624 hybrid contribution 0.143 2.182 0.552 2.255 sum -5.124 -1.350 -3.681 6.452 Atomic orbital electron populations 1.22887 0.79893 1.02794 1.00727 1.86097 1.19956 1.27351 1.89335 1.18433 0.90463 0.83886 1.00103 1.20688 0.98415 0.92343 1.12453 1.20599 0.94322 0.96110 1.01619 1.19859 0.92067 0.96066 1.00039 1.21320 0.97614 0.90799 1.05074 1.20003 0.97582 0.89030 0.91158 1.20420 0.91897 0.96676 1.12535 1.84857 1.05257 1.09785 1.89587 1.23898 0.95340 1.03453 1.02874 1.21834 0.99440 0.91605 1.02686 1.17564 0.86446 0.95396 0.95555 0.94702 1.20838 1.43151 0.99373 0.91725 0.91835 1.24939 0.94992 0.96081 0.97774 1.69803 1.42589 1.26807 1.10805 0.86835 0.79136 0.83488 0.79693 1.19792 1.21179 1.20076 0.93361 0.89107 0.93281 0.86624 0.87218 0.92192 0.96834 0.87736 0.91068 0.89187 0.86387 0.92658 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.31 -6.09 9.67 -19.76 -0.19 -6.28 16 3 C 0.12 2.58 6.68 -38.95 -0.26 2.32 16 4 C -0.22 -4.27 9.03 -39.58 -0.36 -4.63 16 5 C -0.11 -2.16 9.62 -39.73 -0.38 -2.54 16 6 C -0.08 -1.76 5.67 -104.36 -0.59 -2.35 16 7 C -0.09 -1.96 7.86 36.00 0.28 -1.68 16 8 C 0.03 0.67 4.70 -104.57 -0.49 0.18 16 9 C -0.10 -2.39 6.06 -39.00 -0.24 -2.62 16 10 S -0.14 -2.91 21.34 -107.50 -2.29 -5.21 16 11 C -0.11 -2.10 6.53 37.43 0.24 -1.86 16 12 C -0.12 -2.63 4.79 -27.03 -0.13 -2.76 16 13 C 0.07 1.62 1.80 -93.81 -0.17 1.45 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.51 -12.55 4.61 -34.44 -0.16 -12.71 16 16 H 0.06 1.52 6.87 -52.49 -0.36 1.16 16 17 C 0.07 1.66 4.18 -17.82 -0.07 1.59 16 18 N -0.86 -23.00 10.50 55.43 0.58 -22.42 16 19 Si 0.88 19.79 28.41 -169.99 -4.83 14.96 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H 0.05 0.59 7.64 -51.93 -0.40 0.20 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.64 7.65 -51.93 -0.40 0.24 16 26 H 0.12 1.87 6.27 -52.49 -0.33 1.54 16 27 H 0.11 1.92 7.94 -52.49 -0.42 1.51 16 28 H 0.06 1.25 6.62 -51.93 -0.34 0.90 16 29 H 0.01 0.24 7.87 -51.93 -0.41 -0.17 16 30 H 0.10 2.42 3.72 -51.93 -0.19 2.23 16 31 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 32 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 33 H 0.12 3.01 5.72 -51.93 -0.30 2.72 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 281.82 15.07 4.25 4.25 Total: -1.00 -27.51 281.82 -8.21 -35.71 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.39 Total: 3.16 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -1.33 Total: -24.17 kcal Atomic # 7 Polarization: -23.00 SS G_CDS: 0.58 Total: -22.42 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.19 Total: -6.28 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.83 Total: 14.96 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.29 Total: -5.21 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.51 -8.21 -35.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267391.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.472 kcal (2) G-P(sol) polarization free energy of solvation -27.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds