Wall clock time and date at job start Mon Mar 30 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36007 * 116.99559 * 2 1 4 4 C 1.38162 * 119.73248 * 359.96278 * 3 2 1 5 5 C 1.38327 * 119.44964 * 179.87137 * 4 3 2 6 6 C 1.37750 * 120.03750 * 0.30661 * 5 4 3 7 7 C 1.50697 * 119.41669 * 180.08822 * 6 5 4 8 8 C 1.39434 * 121.15921 * 0.10950 * 6 5 4 9 9 C 1.38014 * 118.84825 * 359.33540 * 8 6 5 10 10 S 1.76451 * 122.32487 * 180.86854 * 9 8 6 11 11 C 1.81611 * 102.63224 * 346.56597 * 10 9 8 12 12 C 1.53522 * 107.30790 * 46.41459 * 11 10 9 13 13 C 1.50052 * 116.38920 * 178.36126 * 8 6 5 14 14 H 1.08994 * 108.66985 * 278.85493 * 13 8 6 15 15 C 1.50691 * 108.66184 * 36.74358 * 13 8 6 16 16 H 1.08002 * 119.99922 * 246.58118 * 15 13 8 17 17 C 1.37881 * 120.00377 * 66.58499 * 15 13 8 18 18 N 1.31517 * 119.99630 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00468 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47020 * 59.99361 * 19 17 15 21 21 H 1.48496 * 109.47336 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.46994 * 299.99768 * 19 17 15 23 23 H 1.08997 * 109.47213 * 59.99903 * 1 2 3 24 24 H 1.08998 * 109.47015 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46969 * 300.00185 * 1 2 3 26 26 H 1.07998 * 120.27518 * 359.84221 * 4 3 2 27 27 H 1.08001 * 119.97894 * 180.29274 * 5 4 3 28 28 H 1.08997 * 109.46920 * 229.32618 * 7 6 5 29 29 H 1.09003 * 109.47587 * 349.32898 * 7 6 5 30 30 H 1.09007 * 109.47538 * 109.32887 * 7 6 5 31 31 H 1.09000 * 109.89315 * 286.96254 * 11 10 9 32 32 H 1.09009 * 109.94910 * 165.89811 * 11 10 9 33 33 H 1.09003 * 109.55235 * 47.31184 * 12 11 10 34 34 H 1.08996 * 109.55834 * 167.62147 * 12 11 10 35 35 H 0.97002 * 119.99830 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2884 2.3670 -0.0008 5 6 1.9224 3.5965 0.0019 6 6 3.2983 3.6628 -0.0010 7 6 3.9744 5.0096 0.0040 8 6 4.0763 2.5057 -0.0090 9 6 3.4449 1.2786 0.0000 10 16 4.3390 -0.2426 0.0137 11 6 6.0268 0.2851 -0.3999 12 6 6.3481 1.5097 0.4684 13 6 5.5634 2.7023 -0.0500 14 1 5.8616 2.8946 -1.0805 15 6 5.9134 3.9086 0.7825 16 1 6.3132 4.7935 0.3095 17 6 5.7234 3.8828 2.1479 18 7 5.2362 2.8055 2.7237 19 14 6.1567 5.3785 3.1797 20 1 5.3521 6.5418 2.7273 21 1 5.8606 5.0976 4.6074 22 1 7.6014 5.6854 3.0243 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2099 2.3106 -0.0040 27 1 1.3382 4.5049 0.0061 28 1 4.7341 5.0376 -0.7771 29 1 3.2345 5.7884 -0.1807 30 1 4.4438 5.1770 0.9735 31 1 6.0835 0.5534 -1.4548 32 1 6.7312 -0.5182 -0.1833 33 1 6.0656 1.3085 1.5018 34 1 7.4154 1.7245 0.4157 35 1 5.1029 2.7872 3.6843 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267391.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:44 Heat of formation + Delta-G solvation = -16.265416 kcal Electronic energy + Delta-G solvation = -18644.846296 eV Core-core repulsion = 15927.094461 eV Total energy + Delta-G solvation = -2717.751835 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03690 -39.25957 -36.43635 -34.07859 -32.63967 -31.57649 -28.85922 -28.62379 -26.79434 -24.85254 -23.77354 -22.28972 -21.04127 -19.07210 -17.93209 -17.53982 -16.89413 -16.76020 -16.50464 -15.83698 -15.22499 -14.86954 -14.75337 -14.46195 -14.01667 -13.79382 -13.57032 -13.45072 -13.20023 -12.71967 -12.48431 -12.46144 -12.31723 -12.17009 -11.99066 -11.70568 -11.29611 -11.24120 -11.18835 -10.58975 -10.27492 -10.13296 -8.73877 -8.00605 -7.92353 -5.99595 0.57212 0.75650 0.98428 1.43470 1.47101 1.51168 1.76382 2.44947 2.53459 2.99698 3.24144 4.06708 4.19696 4.25211 4.29735 4.41835 4.44268 4.57500 4.61602 4.73475 4.73677 4.79708 4.85814 4.97283 5.21393 5.22290 5.27705 5.40903 5.49929 5.63597 5.68628 5.82876 6.02613 6.15034 6.24645 6.37530 6.63009 6.83577 7.50009 9.00496 Molecular weight = 264.09amu Principal moments of inertia in cm(-1) A = 0.021074 B = 0.009349 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.311836 B = 2994.310851 C = 3689.285864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.333 6.333 3 C 0.112 3.888 4 C -0.214 4.214 5 C -0.106 4.106 6 C -0.106 4.106 7 C -0.087 4.087 8 C 0.006 3.994 9 C -0.133 4.133 10 S -0.149 6.149 11 C -0.096 4.096 12 C -0.113 4.113 13 C 0.063 3.937 14 H 0.032 0.968 15 C -0.508 4.508 16 H 0.063 0.937 17 C 0.033 3.967 18 N -0.890 5.890 19 Si 0.928 3.072 20 H -0.264 1.264 21 H -0.295 1.295 22 H -0.273 1.273 23 H 0.065 0.935 24 H 0.118 0.882 25 H 0.057 0.943 26 H 0.153 0.847 27 H 0.140 0.860 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 -1.730 -5.238 8.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.247 6.247 3 C 0.062 3.938 4 C -0.234 4.234 5 C -0.126 4.126 6 C -0.109 4.109 7 C -0.143 4.143 8 C 0.000 4.000 9 C -0.245 4.245 10 S 0.091 5.909 11 C -0.244 4.244 12 C -0.152 4.152 13 C 0.045 3.955 14 H 0.050 0.950 15 C -0.546 4.546 16 H 0.081 0.919 17 C -0.168 4.168 18 N -0.528 5.528 19 Si 0.754 3.246 20 H -0.189 1.189 21 H -0.221 1.221 22 H -0.198 1.198 23 H 0.084 0.916 24 H 0.136 0.864 25 H 0.075 0.925 26 H 0.170 0.830 27 H 0.157 0.843 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.620 -3.183 -4.853 8.804 hybrid contribution 0.471 2.036 0.688 2.200 sum -6.149 -1.147 -4.165 7.515 Atomic orbital electron populations 1.23271 0.76967 1.05147 1.01889 1.86072 1.22982 1.26595 1.89052 1.18649 0.90310 0.85270 0.99558 1.21091 1.00197 0.91376 1.10752 1.20975 0.93749 0.97719 1.00121 1.20124 0.93332 0.96058 1.01345 1.21168 0.98136 0.91269 1.03693 1.20028 0.97497 0.89936 0.92501 1.20705 0.93299 0.96838 1.13686 1.84737 1.06378 1.09904 1.89905 1.23869 0.94721 1.02947 1.02904 1.21655 0.99254 0.92719 1.01546 1.17607 0.87240 0.95487 0.95188 0.94956 1.20992 1.42156 0.99575 0.91889 0.91903 1.25394 0.95152 0.97669 0.98583 1.69970 1.44291 1.28271 1.10224 0.86091 0.78995 0.81566 0.77928 1.18860 1.22132 1.19815 0.91635 0.86392 0.92471 0.82996 0.84266 0.92629 0.94265 0.89828 0.89825 0.86666 0.89247 0.92503 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.81 113.37 1.11 1.64 16 2 O -0.33 -12.37 9.67 -93.63 -0.91 -13.27 16 3 C 0.11 4.65 6.68 22.68 0.15 4.80 16 4 C -0.21 -7.82 9.03 22.27 0.20 -7.62 16 5 C -0.11 -4.05 9.62 22.18 0.21 -3.84 16 6 C -0.11 -4.71 5.67 -19.69 -0.11 -4.82 16 7 C -0.09 -3.60 7.86 71.24 0.56 -3.04 16 8 C 0.01 0.29 4.70 -19.83 -0.09 0.20 16 9 C -0.13 -6.15 6.06 22.65 0.14 -6.01 16 10 S -0.15 -6.41 21.34 -56.49 -1.21 -7.61 16 11 C -0.10 -3.71 6.53 72.16 0.47 -3.24 16 12 C -0.11 -5.12 4.79 30.40 0.15 -4.97 16 13 C 0.06 3.01 1.80 -12.86 -0.02 2.98 16 14 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 15 C -0.51 -24.98 4.61 25.60 0.12 -24.87 16 16 H 0.06 3.02 6.87 -2.91 -0.02 3.00 16 17 C 0.03 1.66 4.18 84.66 0.35 2.01 16 18 N -0.89 -48.24 10.50 21.45 0.23 -48.01 16 19 Si 0.93 40.68 28.41 68.60 1.95 42.63 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 21 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H 0.07 1.38 7.64 -2.39 -0.02 1.36 16 24 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.06 1.31 7.65 -2.39 -0.02 1.29 16 26 H 0.15 4.29 6.27 -2.91 -0.02 4.28 16 27 H 0.14 4.39 7.94 -2.91 -0.02 4.36 16 28 H 0.05 2.29 6.62 -2.39 -0.02 2.27 16 29 H 0.04 1.38 7.87 -2.39 -0.02 1.36 16 30 H 0.08 3.83 3.72 -2.38 -0.01 3.82 16 31 H 0.08 3.00 8.08 -2.39 -0.02 2.98 16 32 H 0.12 3.80 8.14 -2.38 -0.02 3.79 16 33 H 0.09 4.66 5.72 -2.39 -0.01 4.64 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -59.14 281.82 4.40 -54.74 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 1.10 Total: 18.29 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 3.24 Total: -46.77 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.23 Total: -48.01 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.91 Total: -13.27 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.95 Total: 42.63 kcal Atomic # 16 Polarization: -6.41 SS G_CDS: -1.21 Total: -7.61 kcal Total: -59.14 4.40 -54.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267391.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.478 kcal (2) G-P(sol) polarization free energy of solvation -59.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds