Wall clock time and date at job start Mon Mar 30 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38308 * 119.92707 * 2 1 4 4 C 1.38084 * 120.07607 * 180.20934 * 3 2 1 5 5 C 1.38912 * 119.92397 * 359.51981 * 4 3 2 6 6 N 1.39885 * 120.07139 * 180.23014 * 5 4 3 7 7 C 1.34778 * 120.00041 * 41.89037 * 6 5 4 8 8 S 1.71203 * 120.00027 * 5.53812 * 7 6 5 9 9 N 1.34774 * 119.99982 * 185.53719 * 7 6 5 10 10 C 1.46499 * 120.00069 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47200 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00212 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99733 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99970 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47281 * 89.99983 * 15 13 11 17 17 H 1.48504 * 109.46973 * 210.00159 * 15 13 11 18 18 H 1.48498 * 109.47099 * 329.99304 * 15 13 11 19 19 C 1.38860 * 119.85620 * 0.25055 * 5 4 3 20 20 C 1.38126 * 119.92822 * 359.97438 * 19 5 4 21 21 C 1.50707 * 119.96290 * 179.97438 * 20 19 5 22 22 H 1.09007 * 109.46998 * 270.24806 * 1 2 3 23 23 H 1.08995 * 109.47431 * 30.25487 * 1 2 3 24 24 H 1.09007 * 109.46653 * 150.25419 * 1 2 3 25 25 H 1.07995 * 119.96248 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.04063 * 179.78991 * 4 3 2 27 27 H 0.97002 * 120.00258 * 221.89296 * 6 5 4 28 28 H 0.97003 * 119.99988 * 359.97438 * 9 7 6 29 29 H 1.09003 * 109.47247 * 299.99702 * 10 9 7 30 30 H 1.09001 * 109.47455 * 60.00049 * 10 9 7 31 31 H 0.97004 * 119.99952 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.03389 * 180.02562 * 19 5 4 33 33 H 1.09003 * 109.46855 * 90.00298 * 21 20 19 34 34 H 1.08991 * 109.47062 * 210.00078 * 21 20 19 35 35 H 1.08999 * 109.47081 * 330.00484 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 -0.0044 5 6 4.2739 0.0002 0.0013 6 7 5.6728 0.0002 0.0018 7 6 6.3464 0.8727 0.7774 8 16 5.4960 1.8832 1.8667 9 7 7.6894 0.9496 0.6955 10 6 8.4216 1.8983 1.5381 11 6 9.8975 1.7865 1.2550 12 1 10.2545 1.0797 0.5206 13 6 10.7922 2.5865 1.9337 14 7 10.3575 3.4475 2.8277 15 14 12.6217 2.4483 1.5823 16 1 12.9888 3.3883 0.4930 17 1 13.3882 2.7874 2.8082 18 1 12.9423 1.0592 1.1666 19 6 3.5782 -1.2015 0.0061 20 6 2.1969 -1.1981 0.0058 21 6 1.4410 -2.5019 0.0104 22 1 -0.3633 0.0044 1.0277 23 1 -0.3634 0.8876 -0.5178 24 1 -0.3633 -0.8923 -0.5099 25 1 1.6552 2.1329 -0.0004 26 1 4.1160 2.1386 -0.0078 27 1 6.1580 -0.6276 -0.5561 28 1 8.1713 0.3768 0.0785 29 1 8.0860 2.9122 1.3199 30 1 8.2344 1.6717 2.5878 31 1 10.9870 4.0100 3.3055 32 1 4.1165 -2.1378 0.0110 33 1 1.2585 -2.8124 1.0392 34 1 0.4890 -2.3718 -0.5041 35 1 2.0289 -3.2645 -0.5004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007557242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:59 Heat of formation + Delta-G solvation = 31.661466 kcal Electronic energy + Delta-G solvation = -16785.648055 eV Core-core repulsion = 14102.267237 eV Total energy + Delta-G solvation = -2683.380818 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00811 -38.06502 -35.38045 -32.92950 -32.30856 -31.41414 -28.00775 -27.19640 -25.71636 -23.64974 -22.76171 -21.94653 -20.54991 -18.37331 -17.53464 -16.23187 -15.63036 -15.39983 -15.18225 -14.76393 -14.40278 -14.00691 -13.81426 -13.42990 -12.98525 -12.84928 -12.70075 -12.24931 -12.23324 -11.99374 -11.37604 -11.23803 -11.06521 -10.97880 -10.82399 -10.55542 -10.39253 -9.61074 -9.34321 -8.65505 -8.60279 -7.90146 -7.18128 -6.49894 -6.27214 -4.38760 1.25303 1.58323 2.09549 2.52828 3.11762 3.16863 3.23972 3.25743 3.89478 4.08608 4.29402 4.82045 4.91437 5.07600 5.09761 5.11545 5.33526 5.43539 5.53435 5.63552 5.73468 5.77363 5.89570 5.96646 6.12252 6.41445 6.46643 6.68855 6.74106 6.79146 7.13239 7.28016 7.32487 7.43091 7.56241 7.78828 8.11489 8.65201 9.27194 10.80745 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.049886 B = 0.003737 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.145034 B = 7491.229785 C = 7852.353551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.071 4.071 5 C 0.145 3.855 6 N -0.652 5.652 7 C 0.546 3.454 8 S -0.644 6.644 9 N -0.643 5.643 10 C 0.249 3.751 11 C -0.559 4.559 12 H 0.062 0.938 13 C 0.070 3.930 14 N -0.874 5.874 15 Si 0.906 3.094 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.273 1.273 19 C -0.129 4.129 20 C -0.088 4.088 21 C -0.112 4.112 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.123 0.877 26 H 0.144 0.856 27 H 0.401 0.599 28 H 0.391 0.609 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.269 0.731 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.816 -10.409 -9.027 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.094 4.094 5 C 0.051 3.949 6 N -0.280 5.280 7 C 0.185 3.815 8 S -0.516 6.516 9 N -0.264 5.264 10 C 0.130 3.870 11 C -0.597 4.597 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.510 5.510 15 Si 0.733 3.267 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.198 1.198 19 C -0.150 4.150 20 C -0.089 4.089 21 C -0.168 4.168 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.141 0.859 26 H 0.162 0.838 27 H 0.238 0.762 28 H 0.226 0.774 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.124 -9.420 -8.008 19.534 hybrid contribution 2.134 -1.093 -1.066 2.624 sum -12.990 -10.513 -9.074 19.016 Atomic orbital electron populations 1.20819 0.91637 1.02399 1.02162 1.19708 0.95721 0.92664 1.01275 1.20797 0.93425 0.97337 1.01514 1.21410 0.94104 0.98280 0.95603 1.17318 0.80445 0.94287 1.02875 1.42189 1.05405 1.36552 1.43877 1.22380 0.86195 0.86551 0.86364 1.93213 1.67342 1.48924 1.42085 1.46070 1.02585 1.38385 1.39347 1.19732 0.89374 0.87544 0.90397 1.21126 0.90355 1.23499 1.24749 0.91976 1.24905 0.99602 0.94591 0.94471 1.69981 1.35367 1.21861 1.23815 0.86376 0.83797 0.78497 0.78031 1.20318 1.20768 1.19797 1.20658 0.93786 0.96159 1.04435 1.19336 0.92613 0.94847 1.02153 1.20792 0.99832 0.94002 1.02177 0.91350 0.91803 0.91518 0.85887 0.83844 0.76220 0.77397 0.92931 0.92996 0.92113 0.86281 0.91374 0.91314 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.60 36.00 0.35 -0.65 16 2 C -0.09 -1.11 5.88 -104.59 -0.62 -1.72 16 3 C -0.11 -1.49 9.69 -39.61 -0.38 -1.88 16 4 C -0.07 -1.13 7.86 -39.39 -0.31 -1.44 16 5 C 0.14 2.16 5.91 -83.70 -0.49 1.67 16 6 N -0.65 -9.65 5.33 -11.40 -0.06 -9.71 16 7 C 0.55 10.49 7.75 -86.92 -0.67 9.82 16 8 S -0.64 -15.06 25.06 -107.50 -2.69 -17.76 16 9 N -0.64 -12.63 5.55 -63.21 -0.35 -12.98 16 10 C 0.25 6.24 4.88 -5.19 -0.03 6.21 16 11 C -0.56 -14.49 9.28 -34.44 -0.32 -14.81 16 12 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 13 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 14 N -0.87 -25.03 13.29 55.43 0.74 -24.29 16 15 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 C -0.13 -1.65 9.62 -39.39 -0.38 -2.02 16 20 C -0.09 -1.03 5.88 -104.65 -0.62 -1.65 16 21 C -0.11 -0.95 9.60 36.01 0.35 -0.60 16 22 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 24 H 0.07 0.48 5.94 -51.93 -0.31 0.17 16 25 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 26 H 0.14 2.57 6.27 -49.93 -0.31 2.26 16 27 H 0.40 4.46 8.84 -40.82 -0.36 4.10 16 28 H 0.39 6.39 8.34 -40.82 -0.34 6.05 16 29 H 0.05 1.47 7.99 -51.93 -0.42 1.05 16 30 H 0.05 1.46 7.99 -51.93 -0.41 1.05 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.49 5.94 -51.93 -0.31 0.18 16 35 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 LS Contribution 307.28 15.07 4.63 4.63 Total: -1.00 -31.69 307.28 -10.51 -42.20 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.53 Total: 8.00 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.22 Total: -5.30 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.32 Total: -46.99 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -15.06 SS G_CDS: -2.69 Total: -17.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.69 -10.51 -42.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007557242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.859 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds