Wall clock time and date at job start Mon Mar 30 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38308 * 119.92707 * 2 1 4 4 C 1.38084 * 120.07607 * 180.20934 * 3 2 1 5 5 C 1.38912 * 119.92397 * 359.51981 * 4 3 2 6 6 N 1.39885 * 120.07139 * 180.23014 * 5 4 3 7 7 C 1.34778 * 120.00041 * 41.89037 * 6 5 4 8 8 S 1.71203 * 120.00027 * 5.53812 * 7 6 5 9 9 N 1.34774 * 119.99982 * 185.53719 * 7 6 5 10 10 C 1.46499 * 120.00069 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47200 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00212 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99733 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99970 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47281 * 89.99983 * 15 13 11 17 17 H 1.48504 * 109.46973 * 210.00159 * 15 13 11 18 18 H 1.48498 * 109.47099 * 329.99304 * 15 13 11 19 19 C 1.38860 * 119.85620 * 0.25055 * 5 4 3 20 20 C 1.38126 * 119.92822 * 359.97438 * 19 5 4 21 21 C 1.50707 * 119.96290 * 179.97438 * 20 19 5 22 22 H 1.09007 * 109.46998 * 270.24806 * 1 2 3 23 23 H 1.08995 * 109.47431 * 30.25487 * 1 2 3 24 24 H 1.09007 * 109.46653 * 150.25419 * 1 2 3 25 25 H 1.07995 * 119.96248 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.04063 * 179.78991 * 4 3 2 27 27 H 0.97002 * 120.00258 * 221.89296 * 6 5 4 28 28 H 0.97003 * 119.99988 * 359.97438 * 9 7 6 29 29 H 1.09003 * 109.47247 * 299.99702 * 10 9 7 30 30 H 1.09001 * 109.47455 * 60.00049 * 10 9 7 31 31 H 0.97004 * 119.99952 * 179.97438 * 14 13 11 32 32 H 1.08002 * 120.03389 * 180.02562 * 19 5 4 33 33 H 1.09003 * 109.46855 * 90.00298 * 21 20 19 34 34 H 1.08991 * 109.47062 * 210.00078 * 21 20 19 35 35 H 1.08999 * 109.47081 * 330.00484 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 -0.0044 5 6 4.2739 0.0002 0.0013 6 7 5.6728 0.0002 0.0018 7 6 6.3464 0.8727 0.7774 8 16 5.4960 1.8832 1.8667 9 7 7.6894 0.9496 0.6955 10 6 8.4216 1.8983 1.5381 11 6 9.8975 1.7865 1.2550 12 1 10.2545 1.0797 0.5206 13 6 10.7922 2.5865 1.9337 14 7 10.3575 3.4475 2.8277 15 14 12.6217 2.4483 1.5823 16 1 12.9888 3.3883 0.4930 17 1 13.3882 2.7874 2.8082 18 1 12.9423 1.0592 1.1666 19 6 3.5782 -1.2015 0.0061 20 6 2.1969 -1.1981 0.0058 21 6 1.4410 -2.5019 0.0104 22 1 -0.3633 0.0044 1.0277 23 1 -0.3634 0.8876 -0.5178 24 1 -0.3633 -0.8923 -0.5099 25 1 1.6552 2.1329 -0.0004 26 1 4.1160 2.1386 -0.0078 27 1 6.1580 -0.6276 -0.5561 28 1 8.1713 0.3768 0.0785 29 1 8.0860 2.9122 1.3199 30 1 8.2344 1.6717 2.5878 31 1 10.9870 4.0100 3.3055 32 1 4.1165 -2.1378 0.0110 33 1 1.2585 -2.8124 1.0392 34 1 0.4890 -2.3718 -0.5041 35 1 2.0289 -3.2645 -0.5004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007557242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:58 Heat of formation + Delta-G solvation = 12.460560 kcal Electronic energy + Delta-G solvation = -16786.480669 eV Core-core repulsion = 14102.267237 eV Total energy + Delta-G solvation = -2684.213432 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.19501 -39.45724 -36.87754 -34.78833 -33.34534 -32.54313 -29.66330 -28.28985 -26.79068 -25.24872 -24.58070 -23.04164 -21.71939 -19.96879 -18.87696 -18.10300 -17.00987 -16.79623 -16.49141 -16.28356 -15.72506 -15.38945 -15.07564 -14.62219 -14.21455 -14.00439 -13.93066 -13.49809 -13.30309 -12.93990 -12.86577 -12.71872 -12.50278 -12.28544 -12.25760 -12.05966 -11.85063 -11.57576 -10.93714 -10.45640 -9.70503 -9.23677 -8.95269 -8.34068 -8.20875 -6.51395 -0.04114 0.53501 0.67347 0.93366 1.41435 1.44110 1.53766 1.60905 2.33641 2.67649 2.84298 3.02791 3.93004 4.01389 4.16922 4.34746 4.39276 4.44698 4.80251 4.82111 4.83992 4.95499 4.99124 5.05175 5.10315 5.17375 5.24364 5.28470 5.41498 5.48513 5.56650 5.71854 5.78071 5.80341 5.98451 6.21913 6.45600 6.66860 7.20718 8.78543 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.049886 B = 0.003737 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.145034 B = 7491.229785 C = 7852.353551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.123 4.123 4 C -0.094 4.094 5 C 0.113 3.887 6 N -0.619 5.619 7 C 0.571 3.429 8 S -0.732 6.732 9 N -0.637 5.637 10 C 0.274 3.726 11 C -0.568 4.568 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.984 3.016 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.256 1.256 19 C -0.123 4.123 20 C -0.090 4.090 21 C -0.110 4.110 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.132 0.868 26 H 0.112 0.888 27 H 0.424 0.576 28 H 0.412 0.588 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.270 0.730 32 H 0.144 0.856 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.228 -13.397 -10.854 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.116 4.116 5 C 0.020 3.980 6 N -0.247 5.247 7 C 0.207 3.793 8 S -0.605 6.605 9 N -0.260 5.260 10 C 0.153 3.847 11 C -0.606 4.606 12 H 0.103 0.897 13 C -0.190 4.190 14 N -0.558 5.558 15 Si 0.807 3.193 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.180 1.180 19 C -0.144 4.144 20 C -0.091 4.091 21 C -0.166 4.166 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.150 0.850 26 H 0.130 0.870 27 H 0.265 0.735 28 H 0.251 0.749 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.585 -12.485 -9.912 22.294 hybrid contribution 2.060 -0.249 -0.578 2.154 sum -13.526 -12.733 -10.491 21.334 Atomic orbital electron populations 1.20901 0.89038 1.03999 1.03002 1.20137 0.97659 0.92033 0.99228 1.20998 0.92703 0.98849 1.01673 1.21263 0.95247 0.97517 0.97558 1.17545 0.79990 0.95084 1.05340 1.41999 1.05793 1.34950 1.42003 1.21792 0.85646 0.86185 0.85681 1.93382 1.68781 1.52483 1.45820 1.45495 1.02555 1.38392 1.39602 1.19028 0.89961 0.86681 0.89076 1.21543 0.90460 1.23662 1.24892 0.89732 1.25980 1.04982 0.94005 0.94027 1.70146 1.37284 1.23121 1.25288 0.85169 0.77122 0.79294 0.77712 1.19645 1.20971 1.17964 1.20956 0.94486 0.95973 1.02993 1.19833 0.92483 0.96386 1.00431 1.20872 1.00433 0.92254 1.03060 0.90702 0.90929 0.89322 0.85046 0.87029 0.73496 0.74928 0.96789 0.96893 0.92064 0.83805 0.90721 0.89504 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.60 71.23 0.68 -0.95 16 2 C -0.09 -1.96 5.88 -19.84 -0.12 -2.08 16 3 C -0.12 -3.31 9.69 22.25 0.22 -3.10 16 4 C -0.09 -3.06 7.86 22.39 0.18 -2.89 16 5 C 0.11 3.33 5.91 38.17 0.23 3.55 16 6 N -0.62 -17.84 5.33 -189.98 -1.01 -18.85 16 7 C 0.57 22.38 7.75 179.05 1.39 23.77 16 8 S -0.73 -36.32 25.06 -56.49 -1.42 -37.74 16 9 N -0.64 -25.21 5.55 -353.90 -1.97 -27.18 16 10 C 0.27 14.30 4.88 85.63 0.42 14.72 16 11 C -0.57 -29.47 9.28 25.60 0.24 -29.23 16 12 H 0.08 3.92 7.60 -2.91 -0.02 3.89 16 13 C 0.01 0.60 5.46 84.66 0.46 1.07 16 14 N -0.92 -54.39 13.29 21.45 0.28 -54.10 16 15 Si 0.98 41.14 29.54 68.60 2.03 43.17 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 19 C -0.12 -2.85 9.62 22.39 0.22 -2.63 16 20 C -0.09 -1.85 5.88 -19.88 -0.12 -1.97 16 21 C -0.11 -1.41 9.60 71.24 0.68 -0.72 16 22 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 24 H 0.09 0.90 5.94 -2.38 -0.01 0.89 16 25 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 26 H 0.11 4.34 6.27 -4.54 -0.03 4.31 16 27 H 0.42 8.45 8.84 -92.71 -0.82 7.63 16 28 H 0.41 12.87 8.34 -92.71 -0.77 12.10 16 29 H 0.01 0.84 7.99 -2.39 -0.02 0.82 16 30 H 0.01 0.78 7.99 -2.39 -0.02 0.76 16 31 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.82 5.94 -2.39 -0.01 0.80 16 35 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 Total: -1.00 -73.04 307.28 1.91 -71.13 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -0.48 Total: 24.02 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 4.47 Total: -0.45 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -2.69 Total: -100.13 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: -36.32 SS G_CDS: -1.42 Total: -37.74 kcal Total: -73.04 1.91 -71.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007557242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.591 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds