Wall clock time and date at job start Mon Mar 30 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38305 * 119.96438 * 2 1 4 4 C 1.38269 * 120.14186 * 180.25500 * 3 2 1 5 5 C 1.38131 * 120.07262 * 359.48862 * 4 3 2 6 6 C 1.50696 * 120.03872 * 180.23406 * 5 4 3 7 7 C 1.38861 * 119.92478 * 0.48804 * 5 4 3 8 8 N 1.39891 * 120.07154 * 179.74020 * 7 5 4 9 9 C 1.34783 * 119.99549 * 132.63829 * 8 7 5 10 10 S 1.71192 * 120.00175 * 4.31111 * 9 8 7 11 11 N 1.34780 * 119.99431 * 184.31655 * 9 8 7 12 12 C 1.46503 * 119.99339 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46729 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00168 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99876 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00454 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99941 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47050 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47357 * 120.00108 * 17 15 13 20 20 H 1.48504 * 109.47014 * 239.99892 * 17 15 13 21 21 C 1.38084 * 119.96480 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47076 * 89.99472 * 1 2 3 23 23 H 1.09001 * 109.47535 * 209.99640 * 1 2 3 24 24 H 1.09006 * 109.47437 * 330.00156 * 1 2 3 25 25 H 1.07994 * 119.92997 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.96036 * 179.72671 * 4 3 2 27 27 H 1.09001 * 109.46801 * 270.25747 * 6 5 4 28 28 H 1.08997 * 109.46843 * 30.25257 * 6 5 4 29 29 H 1.09000 * 109.47142 * 150.25880 * 6 5 4 30 30 H 0.96994 * 120.00271 * 312.64402 * 8 7 5 31 31 H 0.96993 * 120.00297 * 359.97438 * 11 9 8 32 32 H 1.08998 * 109.47205 * 299.99502 * 12 11 9 33 33 H 1.08994 * 109.47369 * 60.00219 * 12 11 9 34 34 H 0.96991 * 120.00382 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.03491 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2025 -0.0053 5 6 4.2763 0.0093 0.0000 6 6 5.7832 0.0149 -0.0005 7 6 3.5857 -1.1954 0.0005 8 7 4.2874 -2.4056 0.0004 9 6 3.9417 -3.3850 0.8594 10 16 2.5761 -3.1916 1.8735 11 7 4.6713 -4.5167 0.9200 12 6 4.2952 -5.5814 1.8533 13 6 5.2645 -6.7281 1.7241 14 1 6.0794 -6.6694 1.0178 15 6 5.1116 -7.8517 2.5084 16 7 4.1196 -7.9231 3.3689 17 14 6.3135 -9.2728 2.3487 18 1 7.3310 -8.9470 1.3173 19 1 6.9857 -9.5016 3.6530 20 1 5.5789 -10.4998 1.9485 21 6 2.1966 -1.1963 0.0005 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6560 2.1324 -0.0004 26 1 4.1168 2.1398 -0.0098 27 1 6.1462 0.0161 -1.0283 28 1 6.1434 0.9063 0.5130 29 1 6.1500 -0.8737 0.5134 30 1 5.0227 -2.5399 -0.6178 31 1 5.4448 -4.6264 0.3452 32 1 4.3207 -5.1968 2.8728 33 1 3.2886 -5.9292 1.6213 34 1 4.0118 -8.7137 3.9203 35 1 1.6566 -2.1316 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007557253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:00 Heat of formation + Delta-G solvation = 30.007866 kcal Electronic energy + Delta-G solvation = -17023.091395 eV Core-core repulsion = 14339.638871 eV Total energy + Delta-G solvation = -2683.452524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07917 -37.85625 -35.14645 -33.51748 -32.63579 -29.73544 -29.17768 -27.38310 -24.85767 -23.95197 -22.71356 -21.92147 -20.76629 -18.34995 -17.28992 -16.22512 -15.56795 -15.52646 -15.27776 -14.79997 -14.12282 -13.88054 -13.73151 -13.45414 -13.23051 -12.76236 -12.63754 -12.24133 -12.11583 -11.79440 -11.39246 -11.24518 -11.07790 -11.02070 -10.84806 -10.54975 -10.39900 -9.58853 -9.38090 -8.67250 -8.43655 -7.97743 -7.20518 -6.48828 -6.27126 -4.38659 1.28162 1.58692 2.07989 2.53360 3.13249 3.16248 3.24263 3.26372 3.86786 4.09817 4.29940 4.85706 4.91339 5.07728 5.15888 5.21910 5.36476 5.47911 5.57905 5.68139 5.74807 5.87480 5.95083 6.06279 6.24259 6.42365 6.48796 6.62031 6.74233 6.84108 7.13275 7.28271 7.32935 7.44025 7.56814 7.79015 8.12062 8.65611 9.27423 10.80797 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.033852 B = 0.004373 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.919361 B = 6401.014434 C = 7030.349084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.120 4.120 5 C -0.101 4.101 6 C -0.113 4.113 7 C 0.142 3.858 8 N -0.650 5.650 9 C 0.547 3.453 10 S -0.645 6.645 11 N -0.644 5.644 12 C 0.249 3.751 13 C -0.558 4.558 14 H 0.063 0.937 15 C 0.070 3.930 16 N -0.875 5.875 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.061 4.061 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.400 0.600 31 H 0.390 0.610 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.268 0.732 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 15.693 -10.019 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.104 4.104 6 C -0.170 4.170 7 C 0.048 3.952 8 N -0.279 5.279 9 C 0.186 3.814 10 S -0.516 6.516 11 N -0.265 5.265 12 C 0.130 3.870 13 C -0.596 4.596 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.511 5.511 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.084 4.084 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.136 0.864 26 H 0.138 0.862 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.238 0.762 31 H 0.226 0.774 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.253 15.457 -9.011 17.894 hybrid contribution 2.116 -1.075 -0.946 2.555 sum 1.863 14.382 -9.957 17.592 Atomic orbital electron populations 1.20730 0.91189 1.02930 1.01787 1.19688 0.96096 0.92397 1.01118 1.20968 0.93998 0.97389 1.01307 1.20655 0.94021 0.96482 1.02778 1.19681 0.95759 0.91941 1.03062 1.20715 0.91430 1.03013 1.01857 1.17145 0.91076 0.82926 1.04009 1.42126 1.35805 1.13088 1.36904 1.22374 0.91160 0.82052 0.85794 1.93179 1.20513 1.88677 1.49211 1.46049 1.26625 1.14919 1.38906 1.19728 0.97648 0.81640 0.88019 1.21161 1.13274 1.01270 1.23908 0.91934 1.24900 0.95693 0.98402 0.94550 1.69987 1.29417 1.29278 1.22371 0.86334 0.80576 0.81702 0.78141 1.19719 1.20597 1.20597 1.21397 0.92522 0.99347 0.95109 0.91661 0.91092 0.91897 0.86392 0.86151 0.91466 0.91254 0.91889 0.76240 0.77434 0.93000 0.92994 0.92176 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.09 -1.23 5.88 -104.66 -0.62 -1.84 16 3 C -0.12 -1.40 9.70 -39.55 -0.38 -1.78 16 4 C -0.12 -1.40 9.70 -39.61 -0.38 -1.78 16 5 C -0.10 -1.30 5.90 -104.43 -0.62 -1.91 16 6 C -0.11 -1.15 9.59 36.00 0.35 -0.80 16 7 C 0.14 2.13 5.85 -83.70 -0.49 1.64 16 8 N -0.65 -9.60 4.43 -11.40 -0.05 -9.65 16 9 C 0.55 10.45 7.84 -86.91 -0.68 9.77 16 10 S -0.64 -14.96 25.00 -107.50 -2.69 -17.65 16 11 N -0.64 -12.59 5.55 -63.21 -0.35 -12.94 16 12 C 0.25 6.23 4.88 -5.19 -0.03 6.20 16 13 C -0.56 -14.41 9.28 -34.44 -0.32 -14.73 16 14 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 15 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 16 N -0.87 -25.00 13.29 55.43 0.74 -24.27 16 17 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 C -0.06 -0.96 7.53 -39.39 -0.30 -1.26 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 24 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.06 0.69 7.39 -51.93 -0.38 0.31 16 30 H 0.40 4.53 8.48 -40.82 -0.35 4.18 16 31 H 0.39 6.36 8.34 -40.82 -0.34 6.02 16 32 H 0.05 1.46 7.99 -51.93 -0.41 1.04 16 33 H 0.05 1.45 7.99 -51.93 -0.42 1.03 16 34 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.15 2.60 6.31 -49.77 -0.31 2.28 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -31.44 309.80 -10.61 -42.04 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.70 Total: 8.21 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.20 Total: -5.59 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.33 Total: -46.86 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -14.96 SS G_CDS: -2.69 Total: -17.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.44 -10.61 -42.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007557253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.050 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds