Wall clock time and date at job start Mon Mar 30 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38305 * 119.96438 * 2 1 4 4 C 1.38269 * 120.14186 * 180.25500 * 3 2 1 5 5 C 1.38131 * 120.07262 * 359.48862 * 4 3 2 6 6 C 1.50696 * 120.03872 * 180.23406 * 5 4 3 7 7 C 1.38861 * 119.92478 * 0.48804 * 5 4 3 8 8 N 1.39891 * 120.07154 * 179.74020 * 7 5 4 9 9 C 1.34783 * 119.99549 * 132.63829 * 8 7 5 10 10 S 1.71192 * 120.00175 * 4.31111 * 9 8 7 11 11 N 1.34780 * 119.99431 * 184.31655 * 9 8 7 12 12 C 1.46503 * 119.99339 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46729 * 179.97438 * 12 11 9 14 14 H 1.08000 * 120.00168 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99876 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00454 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99941 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47050 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47357 * 120.00108 * 17 15 13 20 20 H 1.48504 * 109.47014 * 239.99892 * 17 15 13 21 21 C 1.38084 * 119.96480 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.47076 * 89.99472 * 1 2 3 23 23 H 1.09001 * 109.47535 * 209.99640 * 1 2 3 24 24 H 1.09006 * 109.47437 * 330.00156 * 1 2 3 25 25 H 1.07994 * 119.92997 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.96036 * 179.72671 * 4 3 2 27 27 H 1.09001 * 109.46801 * 270.25747 * 6 5 4 28 28 H 1.08997 * 109.46843 * 30.25257 * 6 5 4 29 29 H 1.09000 * 109.47142 * 150.25880 * 6 5 4 30 30 H 0.96994 * 120.00271 * 312.64402 * 8 7 5 31 31 H 0.96993 * 120.00297 * 359.97438 * 11 9 8 32 32 H 1.08998 * 109.47205 * 299.99502 * 12 11 9 33 33 H 1.08994 * 109.47369 * 60.00219 * 12 11 9 34 34 H 0.96991 * 120.00382 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.03491 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5804 1.2025 -0.0053 5 6 4.2763 0.0093 0.0000 6 6 5.7832 0.0149 -0.0005 7 6 3.5857 -1.1954 0.0005 8 7 4.2874 -2.4056 0.0004 9 6 3.9417 -3.3850 0.8594 10 16 2.5761 -3.1916 1.8735 11 7 4.6713 -4.5167 0.9200 12 6 4.2952 -5.5814 1.8533 13 6 5.2645 -6.7281 1.7241 14 1 6.0794 -6.6694 1.0178 15 6 5.1116 -7.8517 2.5084 16 7 4.1196 -7.9231 3.3689 17 14 6.3135 -9.2728 2.3487 18 1 7.3310 -8.9470 1.3173 19 1 6.9857 -9.5016 3.6530 20 1 5.5789 -10.4998 1.9485 21 6 2.1966 -1.1963 0.0005 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6560 2.1324 -0.0004 26 1 4.1168 2.1398 -0.0098 27 1 6.1462 0.0161 -1.0283 28 1 6.1434 0.9063 0.5130 29 1 6.1500 -0.8737 0.5134 30 1 5.0227 -2.5399 -0.6178 31 1 5.4448 -4.6264 0.3452 32 1 4.3207 -5.1968 2.8728 33 1 3.2886 -5.9292 1.6213 34 1 4.0118 -8.7137 3.9203 35 1 1.6566 -2.1316 0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007557253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:00 Heat of formation + Delta-G solvation = 11.358307 kcal Electronic energy + Delta-G solvation = -17023.900101 eV Core-core repulsion = 14339.638871 eV Total energy + Delta-G solvation = -2684.261229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26809 -39.28956 -36.64331 -34.84309 -34.26063 -31.00177 -30.10690 -29.18081 -25.98520 -25.35320 -24.58565 -23.15336 -21.89122 -19.95817 -18.61779 -18.11160 -16.90414 -16.76324 -16.65222 -16.43313 -15.61997 -15.39010 -14.85161 -14.69268 -14.22176 -14.07163 -13.76587 -13.64915 -13.44316 -12.91714 -12.83211 -12.71066 -12.43531 -12.28406 -12.23788 -12.15457 -11.98564 -11.54037 -10.95928 -10.48713 -9.63490 -9.20031 -8.97591 -8.34208 -8.20826 -6.51042 0.02435 0.52819 0.67294 0.93258 1.41887 1.43189 1.54968 1.63726 2.33857 2.68251 2.85341 3.03212 3.92119 3.99085 4.19696 4.31382 4.37347 4.62507 4.76910 4.78897 4.80060 4.88453 4.90730 4.97158 5.14957 5.17946 5.22812 5.34071 5.38512 5.46305 5.60051 5.71265 5.75800 5.81882 5.97215 6.23778 6.46210 6.67507 7.21207 8.79014 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.033852 B = 0.004373 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.919361 B = 6401.014434 C = 7030.349084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.111 4.111 4 C -0.118 4.118 5 C -0.099 4.099 6 C -0.113 4.113 7 C 0.109 3.891 8 N -0.617 5.617 9 C 0.572 3.428 10 S -0.730 6.730 11 N -0.638 5.638 12 C 0.275 3.725 13 C -0.566 4.566 14 H 0.085 0.915 15 C 0.012 3.988 16 N -0.922 5.922 17 Si 0.983 3.017 18 H -0.254 1.254 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.084 4.084 22 H 0.081 0.919 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.150 0.850 26 H 0.156 0.844 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.422 0.578 31 H 0.411 0.589 32 H 0.013 0.987 33 H 0.013 0.987 34 H 0.270 0.730 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 17.561 -11.868 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.130 4.130 4 C -0.137 4.137 5 C -0.102 4.102 6 C -0.169 4.169 7 C 0.016 3.984 8 N -0.246 5.246 9 C 0.207 3.793 10 S -0.603 6.603 11 N -0.262 5.262 12 C 0.153 3.847 13 C -0.604 4.604 14 H 0.103 0.897 15 C -0.189 4.189 16 N -0.559 5.559 17 Si 0.807 3.193 18 H -0.177 1.177 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.107 4.107 22 H 0.100 0.900 23 H 0.067 0.933 24 H 0.101 0.899 25 H 0.168 0.832 26 H 0.173 0.827 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.263 0.737 31 H 0.250 0.750 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.193 17.400 -10.941 20.671 hybrid contribution 1.336 -1.456 -0.462 2.030 sum 3.529 15.944 -11.404 19.918 Atomic orbital electron populations 1.20745 0.90060 1.02789 1.02814 1.19981 0.97220 0.92383 1.01045 1.21370 0.94526 0.97773 0.99301 1.21123 0.94139 0.97365 1.01068 1.20030 0.97375 0.91204 1.01560 1.20793 0.89271 1.03332 1.03529 1.17419 0.91079 0.83392 1.06543 1.41941 1.35417 1.12017 1.35213 1.21808 0.89548 0.82542 0.85362 1.93352 1.24299 1.89940 1.52713 1.45474 1.27562 1.14188 1.38956 1.19020 0.95992 0.82680 0.87011 1.21567 1.13559 1.01216 1.24028 0.89743 1.25965 0.97447 1.01542 0.93972 1.70149 1.31747 1.30348 1.23666 0.85133 0.78196 0.77568 0.78442 1.17693 1.20486 1.20491 1.21272 0.93185 0.99139 0.97079 0.90022 0.93311 0.89901 0.83225 0.82662 0.88993 0.89565 0.92986 0.73712 0.75001 0.96944 0.96856 0.92086 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.37 10.01 71.23 0.71 -1.66 16 2 C -0.10 -2.75 5.88 -19.89 -0.12 -2.87 16 3 C -0.11 -2.31 9.70 22.29 0.22 -2.10 16 4 C -0.12 -2.31 9.70 22.25 0.22 -2.10 16 5 C -0.10 -2.27 5.90 -19.74 -0.12 -2.39 16 6 C -0.11 -1.87 9.59 71.23 0.68 -1.19 16 7 C 0.11 3.19 5.85 38.16 0.22 3.41 16 8 N -0.62 -17.86 4.43 -189.98 -0.84 -18.70 16 9 C 0.57 22.37 7.84 179.05 1.40 23.78 16 10 S -0.73 -36.10 25.00 -56.49 -1.41 -37.51 16 11 N -0.64 -25.24 5.55 -353.90 -1.97 -27.20 16 12 C 0.27 14.31 4.88 85.63 0.42 14.73 16 13 C -0.57 -29.31 9.28 25.60 0.24 -29.07 16 14 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 15 C 0.01 0.63 5.46 84.65 0.46 1.10 16 16 N -0.92 -54.37 13.29 21.45 0.28 -54.09 16 17 Si 0.98 41.09 29.54 68.60 2.03 43.12 16 18 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 19 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 20 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 21 C -0.08 -2.73 7.53 22.39 0.17 -2.57 16 22 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.05 1.28 8.08 -2.39 -0.02 1.26 16 24 H 0.08 1.46 8.09 -2.38 -0.02 1.44 16 25 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 26 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 27 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 1.18 8.09 -2.39 -0.02 1.16 16 29 H 0.05 0.99 7.39 -2.39 -0.02 0.97 16 30 H 0.42 8.71 8.48 -92.71 -0.79 7.92 16 31 H 0.41 12.87 8.34 -92.71 -0.77 12.10 16 32 H 0.01 0.75 7.99 -2.39 -0.02 0.73 16 33 H 0.01 0.80 7.99 -2.39 -0.02 0.78 16 34 H 0.27 14.91 8.31 -92.72 -0.77 14.14 16 35 H 0.11 4.38 6.31 -4.64 -0.03 4.36 16 Total: -1.00 -72.78 309.80 2.14 -70.64 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -0.46 Total: 24.68 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 4.51 Total: -0.93 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -2.52 Total: -99.99 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: -36.10 SS G_CDS: -1.41 Total: -37.51 kcal Total: -72.78 2.14 -70.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007557253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.995 kcal (2) G-P(sol) polarization free energy of solvation -72.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds