Wall clock time and date at job start Mon Mar 30 2020 06:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 C 1.53001 * 109.47521 * 120.00572 * 2 1 3 5 5 H 1.08997 * 109.46445 * 299.99752 * 4 2 1 6 6 O 1.42900 * 109.47073 * 59.99616 * 4 2 1 7 7 C 1.35675 * 116.99766 * 203.11331 * 6 4 2 8 8 C 1.39309 * 119.81951 * 174.94671 * 7 6 4 9 9 C 1.36437 * 120.18784 * 179.76132 * 8 7 6 10 10 C 1.40837 * 119.80804 * 0.50937 * 9 8 7 11 11 C 1.41211 * 120.17707 * 179.72255 * 10 9 8 12 12 H 1.07999 * 120.00127 * 28.99483 * 11 10 9 13 13 C 1.39894 * 119.99942 * 208.99683 * 11 10 9 14 14 N 1.30873 * 119.99883 * 11.33019 * 13 11 10 15 15 Si 1.86802 * 119.99851 * 191.33484 * 13 11 10 16 16 H 1.48498 * 109.47560 * 59.99694 * 15 13 11 17 17 H 1.48504 * 109.47080 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47126 * 299.99691 * 15 13 11 19 19 C 1.40828 * 119.64364 * 359.74066 * 10 9 8 20 20 C 1.36438 * 119.81116 * 0.02562 * 19 10 9 21 21 C 1.50693 * 109.46978 * 179.97438 * 4 2 1 22 22 O 1.20826 * 119.99934 * 244.99172 * 21 4 2 23 23 O 1.34230 * 120.00299 * 64.99917 * 21 4 2 24 24 H 1.08998 * 109.47018 * 299.99507 * 1 2 3 25 25 H 1.08999 * 109.47468 * 59.99671 * 1 2 3 26 26 H 1.09003 * 109.47277 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46645 * 240.00386 * 2 1 3 28 28 H 1.08994 * 109.46914 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47224 * 300.00479 * 3 2 1 30 30 H 1.08998 * 109.46778 * 60.00346 * 3 2 1 31 31 H 1.08000 * 119.90410 * 0.02562 * 8 7 6 32 32 H 1.07997 * 120.09200 * 180.25321 * 9 8 7 33 33 H 0.97008 * 119.99809 * 180.02562 * 14 13 11 34 34 H 1.08003 * 120.09511 * 179.97438 * 19 10 9 35 35 H 1.08008 * 119.90862 * 179.97438 * 20 19 10 36 36 H 0.96698 * 117.00748 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6768 -0.2075 2.1391 6 8 1.5637 -2.0686 1.2491 7 6 1.4952 -2.6977 2.4492 8 6 0.9411 -3.9732 2.5321 9 6 0.8728 -4.6147 3.7343 10 6 1.3547 -3.9794 4.8952 11 6 1.2826 -4.6338 6.1445 12 1 1.3165 -5.7122 6.1919 13 6 1.1671 -3.8852 7.3206 14 7 0.9038 -2.6048 7.2581 15 14 1.3889 -4.7133 8.9803 16 1 2.7497 -5.3021 9.0619 17 1 1.2188 -3.7092 10.0611 18 1 0.3749 -5.7868 9.1373 19 6 1.9086 -2.6879 4.8035 20 6 1.9737 -2.0621 3.5929 21 6 3.5470 -0.7218 1.2487 22 8 4.1508 -1.7645 1.1575 23 8 4.2186 0.4360 1.3497 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.5684 -4.4573 1.6415 32 1 0.4467 -5.6051 3.7962 33 1 0.8241 -2.0856 8.0736 34 1 2.2799 -2.1937 5.6892 35 1 2.3978 -1.0714 3.5208 36 1 5.1843 0.3853 1.3454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019409165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:44 Heat of formation + Delta-G solvation = -119.093035 kcal Electronic energy + Delta-G solvation = -20044.528435 eV Core-core repulsion = 16879.564789 eV Total energy + Delta-G solvation = -3164.963646 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55251 -38.60758 -36.79318 -35.98649 -34.91825 -33.23385 -29.75130 -29.26434 -27.80918 -26.98372 -24.83263 -22.21718 -21.53812 -20.70996 -19.67139 -18.13221 -17.39596 -17.08819 -16.88478 -15.74593 -15.28936 -14.65743 -14.11937 -13.87788 -13.77511 -13.37290 -13.02802 -12.73841 -12.50020 -12.32964 -12.14723 -11.76612 -11.71149 -11.53948 -11.31353 -11.09858 -11.03268 -10.82533 -10.79326 -10.62116 -10.36123 -9.86582 -9.77997 -9.38796 -9.08742 -7.68318 -7.00016 -6.69331 -4.28894 2.37742 2.72758 2.94475 3.03272 3.08158 3.11520 3.23531 3.88291 3.96687 4.64801 4.71777 4.88048 5.21222 5.28533 5.38060 5.60151 5.64406 5.66072 5.86215 5.92091 6.00861 6.09443 6.22397 6.28028 6.38821 6.59123 6.64378 6.85086 7.05564 7.26794 7.34431 7.53510 7.84881 7.96649 8.03800 8.13696 8.37295 8.61342 8.90098 8.95796 10.26245 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.004928 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.918528 B = 5680.192582 C = 5881.451108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.155 4.155 4 C 0.108 3.892 5 H 0.104 0.896 6 O -0.291 6.291 7 C -0.008 4.008 8 C -0.109 4.109 9 C -0.191 4.191 10 C 0.089 3.911 11 C -0.464 4.464 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.809 5.809 15 Si 0.911 3.089 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.124 4.124 20 C -0.174 4.174 21 C 0.451 3.549 22 O -0.490 6.490 23 O -0.515 6.515 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.279 0.721 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.666 8.264 -9.020 12.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C -0.212 4.212 4 C 0.049 3.951 5 H 0.122 0.878 6 O -0.205 6.205 7 C -0.050 4.050 8 C -0.127 4.127 9 C -0.211 4.211 10 C 0.087 3.913 11 C -0.494 4.494 12 H 0.095 0.905 13 C -0.143 4.143 14 N -0.436 5.436 15 Si 0.736 3.264 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.144 4.144 20 C -0.193 4.193 21 C 0.291 3.709 22 O -0.375 6.375 23 O -0.328 6.328 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 1.296 8.088 -9.056 12.211 hybrid contribution 0.889 -0.215 1.084 1.419 sum 2.185 7.873 -7.972 11.415 Atomic orbital electron populations 1.21771 0.93289 1.03184 1.01817 1.21073 0.97564 0.95861 0.95634 1.22000 1.02793 0.94172 1.02228 1.21748 0.85391 0.86052 1.01927 0.87832 1.85975 1.80312 1.23957 1.30293 1.18576 1.08997 0.94675 0.82790 1.19583 1.03052 0.92608 0.97489 1.20659 1.07226 1.00614 0.92574 1.17605 0.89259 0.91985 0.92468 1.19436 1.45094 0.94557 0.90314 0.90547 1.25856 0.92400 0.94733 1.01289 1.69790 1.35741 1.07478 1.30574 0.86330 0.79931 0.79683 0.80501 1.18979 1.20429 1.19067 1.20947 1.01064 0.96942 0.95405 1.20519 1.05984 0.98946 0.93839 1.24543 0.92713 0.81175 0.72422 1.90744 1.70017 1.33182 1.43586 1.84629 1.26163 1.36454 1.85563 0.92318 0.92303 0.91282 0.90142 0.90631 0.92011 0.92058 0.88296 0.87989 0.91013 0.85949 0.89425 0.73981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.05 37.16 0.34 -1.37 16 2 C -0.08 -1.05 2.71 -90.62 -0.25 -1.29 16 3 C -0.15 -1.58 8.67 37.16 0.32 -1.26 16 4 C 0.11 1.80 1.76 -27.89 -0.05 1.75 16 5 H 0.10 1.71 6.38 -51.93 -0.33 1.38 16 6 O -0.29 -5.96 8.71 -38.64 -0.34 -6.30 16 7 C -0.01 -0.18 6.42 -38.78 -0.25 -0.43 16 8 C -0.11 -2.56 9.92 -39.83 -0.40 -2.96 16 9 C -0.19 -4.76 9.74 -39.25 -0.38 -5.15 16 10 C 0.09 2.41 5.55 -106.81 -0.59 1.82 16 11 C -0.46 -12.42 9.05 -37.83 -0.34 -12.76 16 12 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 13 C 0.07 1.85 5.24 -17.34 -0.09 1.76 16 14 N -0.81 -21.09 10.88 55.54 0.60 -20.49 16 15 Si 0.91 18.93 29.57 -169.99 -5.03 13.91 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 19 C -0.12 -3.28 8.60 -39.25 -0.34 -3.62 16 20 C -0.17 -4.19 8.60 -39.83 -0.34 -4.53 16 21 C 0.45 7.54 6.44 36.00 0.23 7.78 16 22 O -0.49 -10.18 17.09 -25.47 -0.44 -10.62 16 23 O -0.52 -6.28 10.65 -39.26 -0.42 -6.70 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.78 5.54 -51.93 -0.29 0.49 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 33 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 34 H 0.12 3.32 6.25 -52.48 -0.33 3.00 16 35 H 0.09 1.91 5.62 -52.48 -0.29 1.61 16 36 H 0.40 3.24 9.10 45.56 0.41 3.66 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -30.93 303.53 -6.91 -37.84 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -3.73 Total: 8.06 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -2.14 Total: -20.28 kcal Atomic # 7 Polarization: -21.09 SS G_CDS: 0.60 Total: -20.49 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -1.19 Total: -23.61 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.93 -6.91 -37.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019409165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.252 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds