Wall clock time and date at job start Mon Mar 30 2020 06:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47109 * 2 1 4 4 C 1.53001 * 109.47521 * 120.00572 * 2 1 3 5 5 H 1.08997 * 109.46445 * 299.99752 * 4 2 1 6 6 O 1.42900 * 109.47073 * 59.99616 * 4 2 1 7 7 C 1.35675 * 116.99766 * 203.11331 * 6 4 2 8 8 C 1.39309 * 119.81951 * 174.94671 * 7 6 4 9 9 C 1.36437 * 120.18784 * 179.76132 * 8 7 6 10 10 C 1.40837 * 119.80804 * 0.50937 * 9 8 7 11 11 C 1.41211 * 120.17707 * 179.72255 * 10 9 8 12 12 H 1.07999 * 120.00127 * 28.99483 * 11 10 9 13 13 C 1.39894 * 119.99942 * 208.99683 * 11 10 9 14 14 N 1.30873 * 119.99883 * 11.33019 * 13 11 10 15 15 Si 1.86802 * 119.99851 * 191.33484 * 13 11 10 16 16 H 1.48498 * 109.47560 * 59.99694 * 15 13 11 17 17 H 1.48504 * 109.47080 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47126 * 299.99691 * 15 13 11 19 19 C 1.40828 * 119.64364 * 359.74066 * 10 9 8 20 20 C 1.36438 * 119.81116 * 0.02562 * 19 10 9 21 21 C 1.50693 * 109.46978 * 179.97438 * 4 2 1 22 22 O 1.20826 * 119.99934 * 244.99172 * 21 4 2 23 23 O 1.34230 * 120.00299 * 64.99917 * 21 4 2 24 24 H 1.08998 * 109.47018 * 299.99507 * 1 2 3 25 25 H 1.08999 * 109.47468 * 59.99671 * 1 2 3 26 26 H 1.09003 * 109.47277 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46645 * 240.00386 * 2 1 3 28 28 H 1.08994 * 109.46914 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47224 * 300.00479 * 3 2 1 30 30 H 1.08998 * 109.46778 * 60.00346 * 3 2 1 31 31 H 1.08000 * 119.90410 * 0.02562 * 8 7 6 32 32 H 1.07997 * 120.09200 * 180.25321 * 9 8 7 33 33 H 0.97008 * 119.99809 * 180.02562 * 14 13 11 34 34 H 1.08003 * 120.09511 * 179.97438 * 19 10 9 35 35 H 1.08008 * 119.90862 * 179.97438 * 20 19 10 36 36 H 0.96698 * 117.00748 * 179.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 1 1.6768 -0.2075 2.1391 6 8 1.5637 -2.0686 1.2491 7 6 1.4952 -2.6977 2.4492 8 6 0.9411 -3.9732 2.5321 9 6 0.8728 -4.6147 3.7343 10 6 1.3547 -3.9794 4.8952 11 6 1.2826 -4.6338 6.1445 12 1 1.3165 -5.7122 6.1919 13 6 1.1671 -3.8852 7.3206 14 7 0.9038 -2.6048 7.2581 15 14 1.3889 -4.7133 8.9803 16 1 2.7497 -5.3021 9.0619 17 1 1.2188 -3.7092 10.0611 18 1 0.3749 -5.7868 9.1373 19 6 1.9086 -2.6879 4.8035 20 6 1.9737 -2.0621 3.5929 21 6 3.5470 -0.7218 1.2487 22 8 4.1508 -1.7645 1.1575 23 8 4.2186 0.4360 1.3497 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.5684 -4.4573 1.6415 32 1 0.4467 -5.6051 3.7962 33 1 0.8241 -2.0856 8.0736 34 1 2.2799 -2.1937 5.6892 35 1 2.3978 -1.0714 3.5208 36 1 5.1843 0.3853 1.3454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019409165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:43 Heat of formation + Delta-G solvation = -137.180743 kcal Electronic energy + Delta-G solvation = -20045.312777 eV Core-core repulsion = 16879.564789 eV Total energy + Delta-G solvation = -3165.747988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.94297 -40.21937 -38.45989 -37.24676 -36.21625 -35.06635 -31.65517 -31.11714 -29.13121 -27.94903 -26.69622 -23.57316 -23.29002 -22.38091 -20.99318 -19.47087 -19.26721 -18.75856 -18.18287 -17.23865 -16.84775 -16.27309 -15.81427 -15.25877 -15.00272 -14.88573 -14.60058 -14.30170 -14.07874 -13.70078 -13.51610 -13.24614 -13.10834 -12.95213 -12.77577 -12.77265 -12.46191 -12.18448 -12.07955 -11.79858 -11.74166 -11.67774 -11.35158 -11.24809 -10.93369 -9.62346 -8.92042 -8.58246 -6.28195 0.87116 0.99137 1.07253 1.39242 1.50061 1.51612 1.81943 2.22828 2.43280 2.74521 3.57808 3.64979 3.74397 4.12022 4.15429 4.20541 4.32727 4.34831 4.59153 4.77325 4.85844 4.94366 5.01128 5.05579 5.11386 5.16914 5.33331 5.38503 5.42909 5.49540 5.52144 5.61869 5.88682 6.03308 6.16647 6.47719 6.67846 6.91076 6.93667 7.02564 8.39323 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.004928 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.918528 B = 5680.192582 C = 5881.451108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 C -0.150 4.150 4 C 0.096 3.904 5 H 0.104 0.896 6 O -0.297 6.297 7 C 0.002 3.998 8 C -0.119 4.119 9 C -0.198 4.198 10 C 0.056 3.944 11 C -0.500 4.500 12 H 0.077 0.923 13 C 0.032 3.968 14 N -0.839 5.839 15 Si 0.984 3.016 16 H -0.263 1.263 17 H -0.268 1.268 18 H -0.259 1.259 19 C -0.146 4.146 20 C -0.177 4.177 21 C 0.459 3.541 22 O -0.537 6.537 23 O -0.495 6.495 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.286 0.714 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 9.435 -9.643 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 C -0.207 4.207 4 C 0.037 3.963 5 H 0.122 0.878 6 O -0.212 6.212 7 C -0.041 4.041 8 C -0.137 4.137 9 C -0.218 4.218 10 C 0.054 3.946 11 C -0.530 4.530 12 H 0.095 0.905 13 C -0.181 4.181 14 N -0.466 5.466 15 Si 0.805 3.195 16 H -0.187 1.187 17 H -0.193 1.193 18 H -0.183 1.183 19 C -0.166 4.166 20 C -0.196 4.196 21 C 0.302 3.698 22 O -0.427 6.427 23 O -0.309 6.309 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.132 0.868 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 1.329 9.302 -9.705 13.509 hybrid contribution 0.914 -0.432 1.110 1.501 sum 2.243 8.870 -8.595 12.553 Atomic orbital electron populations 1.21781 0.92645 1.02283 1.03247 1.21176 0.98060 0.96898 0.93451 1.21994 1.02725 0.92305 1.03632 1.22219 0.85749 0.84206 1.04121 0.87804 1.85965 1.80535 1.26049 1.28609 1.18699 1.07181 0.94687 0.83567 1.19900 1.02882 0.92960 0.97980 1.20882 1.07032 1.01246 0.92625 1.17963 0.90367 0.92763 0.93543 1.19700 1.47108 0.94853 0.91348 0.90525 1.26715 0.91368 0.95262 1.04768 1.69854 1.36041 1.08797 1.31951 0.85217 0.79860 0.78775 0.75614 1.18715 1.19258 1.18346 1.20901 1.02461 0.97401 0.95797 1.20673 1.05839 0.99725 0.93378 1.24449 0.92817 0.81324 0.71233 1.90739 1.70887 1.34947 1.46089 1.84568 1.28045 1.33887 1.84403 0.92326 0.89477 0.93341 0.90026 0.90677 0.89535 0.91773 0.85836 0.86758 0.90333 0.87487 0.87627 0.71430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.05 71.98 0.65 -2.43 16 2 C -0.08 -1.78 2.71 -10.79 -0.03 -1.81 16 3 C -0.15 -2.56 8.67 71.98 0.62 -1.94 16 4 C 0.10 3.05 1.76 29.85 0.05 3.10 16 5 H 0.10 3.32 6.38 -2.39 -0.02 3.30 16 6 O -0.30 -11.99 8.71 -70.88 -0.62 -12.61 16 7 C 0.00 0.10 6.42 22.79 0.15 0.25 16 8 C -0.12 -5.60 9.92 22.11 0.22 -5.38 16 9 C -0.20 -10.05 9.74 22.49 0.22 -9.83 16 10 C 0.06 3.10 5.55 -21.28 -0.12 2.98 16 11 C -0.50 -27.51 9.05 23.40 0.21 -27.30 16 12 H 0.08 4.04 7.87 -2.91 -0.02 4.01 16 13 C 0.03 1.62 5.24 85.24 0.45 2.07 16 14 N -0.84 -44.60 10.88 21.82 0.24 -44.36 16 15 Si 0.98 38.94 29.57 68.60 2.03 40.97 16 16 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 17 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 19 C -0.15 -7.96 8.60 22.48 0.19 -7.77 16 20 C -0.18 -8.64 8.60 22.11 0.19 -8.45 16 21 C 0.46 14.75 6.44 71.23 0.46 15.21 16 22 O -0.54 -22.08 17.09 28.38 0.48 -21.59 16 23 O -0.49 -10.85 10.65 -51.42 -0.55 -11.40 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.24 7.68 -2.39 -0.02 1.23 16 27 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.07 1.30 5.54 -2.39 -0.01 1.28 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 32 H 0.11 5.33 8.06 -2.91 -0.02 5.31 16 33 H 0.29 13.80 8.30 -92.70 -0.77 13.03 16 34 H 0.11 6.06 6.25 -2.91 -0.02 6.04 16 35 H 0.11 4.60 5.62 -2.91 -0.02 4.59 16 36 H 0.42 5.72 9.10 -74.06 -0.67 5.04 16 Total: -1.00 -68.03 303.53 5.28 -62.75 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.43 Total: 27.54 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 3.27 Total: -41.29 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.24 Total: -44.36 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.68 Total: -45.61 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -68.03 5.28 -62.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019409165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.430 kcal (2) G-P(sol) polarization free energy of solvation -68.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds