Wall clock time and date at job start Mon Mar 30 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37685 * 119.94979 * 2 1 4 4 C 1.39796 * 119.90418 * 180.02562 * 3 2 1 5 5 C 1.47460 * 120.09196 * 179.97438 * 4 3 2 6 6 O 1.21503 * 120.00106 * 359.97438 * 5 4 3 7 7 O 1.34750 * 120.00061 * 179.97438 * 5 4 3 8 8 C 1.39794 * 119.81323 * 359.97438 * 4 3 2 9 9 C 1.37676 * 119.90821 * 0.02562 * 8 4 3 10 10 C 1.50701 * 119.95590 * 179.97438 * 9 8 4 11 11 C 1.39011 * 119.95405 * 180.02562 * 2 1 3 12 12 O 1.35700 * 119.90942 * 0.02562 * 11 2 1 13 13 C 1.42895 * 116.99906 * 89.99985 * 12 11 2 14 14 C 1.52998 * 109.47312 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47367 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00096 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00072 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00068 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00146 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47234 * 119.99833 * 19 17 15 22 22 H 1.48498 * 109.47539 * 240.00252 * 19 17 15 23 23 H 1.08997 * 109.47077 * 89.99903 * 1 2 3 24 24 H 1.09002 * 109.46606 * 210.00358 * 1 2 3 25 25 H 1.09003 * 109.46796 * 329.99735 * 1 2 3 26 26 H 1.08000 * 120.04787 * 359.72242 * 3 2 1 27 27 H 0.96701 * 117.00406 * 180.02562 * 7 5 4 28 28 H 1.08002 * 120.04419 * 180.02562 * 8 4 3 29 29 H 1.09000 * 109.46727 * 269.98191 * 10 9 8 30 30 H 1.09003 * 109.47057 * 29.97964 * 10 9 8 31 31 H 1.08992 * 109.47494 * 149.98025 * 10 9 8 32 32 H 1.09001 * 109.47518 * 300.00407 * 13 12 11 33 33 H 1.09001 * 109.47263 * 59.99555 * 13 12 11 34 34 H 1.08996 * 109.46965 * 300.00009 * 14 13 12 35 35 H 1.08993 * 109.47065 * 59.99869 * 14 13 12 36 36 H 0.97001 * 120.00105 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1930 0.0000 4 6 3.5924 1.1919 -0.0005 5 6 4.3327 2.4671 -0.0011 6 8 3.7278 3.5209 -0.0016 7 8 5.6802 2.4639 -0.0011 8 6 4.2864 -0.0216 -0.0005 9 6 3.5913 -1.2100 -0.0005 10 6 4.3384 -2.5188 -0.0011 11 6 2.2011 -1.2044 -0.0005 12 8 1.5198 -2.3780 -0.0016 13 6 1.1946 -2.9382 -1.2753 14 6 0.4325 -4.2498 -1.0761 15 6 0.0901 -4.8408 -2.4193 16 1 0.3860 -4.3317 -3.3246 17 6 -0.6011 -6.0316 -2.4926 18 7 -0.9620 -6.6513 -1.3902 19 14 -1.0262 -6.7639 -4.1576 20 1 -0.5118 -5.8789 -5.2336 21 1 -0.4033 -8.1064 -4.2816 22 1 -2.5007 -6.8890 -4.2816 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6544 2.1283 -0.0045 27 1 6.1214 3.3244 -0.0011 28 1 5.3664 -0.0268 -0.0005 29 1 4.5178 -2.8342 -1.0289 30 1 5.2919 -2.3931 0.5121 31 1 3.7461 -3.2755 0.5130 32 1 0.5723 -2.2377 -1.8322 33 1 2.1116 -3.1313 -1.8321 34 1 1.0545 -4.9504 -0.5192 35 1 -0.4844 -4.0562 -0.5195 36 1 -1.4479 -7.4893 -1.4417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020424721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:00 Heat of formation + Delta-G solvation = -127.497815 kcal Electronic energy + Delta-G solvation = -19303.053382 eV Core-core repulsion = 16137.725277 eV Total energy + Delta-G solvation = -3165.328105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65750 -39.65084 -37.05970 -36.22899 -33.62477 -33.40812 -31.57510 -30.04495 -27.17579 -26.72321 -25.13539 -23.98968 -21.22089 -21.03067 -20.59902 -18.20194 -17.60825 -16.99995 -16.22815 -16.08356 -15.78161 -14.91746 -14.37093 -14.12233 -13.97939 -13.79925 -13.18073 -13.09940 -13.03011 -12.83639 -12.33379 -11.87632 -11.84156 -11.80503 -11.65428 -11.47908 -11.06528 -11.05525 -10.76811 -10.59049 -10.52002 -9.66922 -9.33490 -9.28252 -8.70082 -8.49488 -8.45996 -6.12192 -4.16706 0.56499 1.27414 2.36653 2.86151 3.25008 3.32563 3.35943 3.52549 4.15955 4.41570 4.66725 4.74600 4.96784 5.10039 5.24426 5.32002 5.45951 5.59417 5.68608 5.78047 5.80075 5.83346 6.01644 6.06519 6.10929 6.17489 6.26558 6.37142 6.38239 6.56142 6.61722 6.70137 7.48619 7.63410 7.71929 7.79349 8.05069 8.22840 8.89407 9.47923 10.99178 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033774 B = 0.003836 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.841125 B = 7297.730323 C = 7551.813390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.118 4.118 3 C -0.047 4.047 4 C -0.147 4.147 5 C 0.532 3.468 6 O -0.520 6.520 7 O -0.513 6.513 8 C -0.054 4.054 9 C -0.121 4.121 10 C -0.112 4.112 11 C 0.154 3.846 12 O -0.338 6.338 13 C 0.079 3.921 14 C 0.027 3.973 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.138 0.862 27 H 0.412 0.588 28 H 0.138 0.862 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.640 14.451 3.127 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C -0.065 4.065 4 C -0.148 4.148 5 C 0.378 3.622 6 O -0.411 6.411 7 O -0.325 6.325 8 C -0.072 4.072 9 C -0.121 4.121 10 C -0.169 4.169 11 C 0.109 3.891 12 O -0.256 6.256 13 C 0.006 3.994 14 C -0.011 4.011 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.156 0.844 27 H 0.270 0.730 28 H 0.156 0.844 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.117 14.067 3.333 17.645 hybrid contribution 0.119 0.263 -1.039 1.079 sum 10.236 14.331 2.293 17.759 Atomic orbital electron populations 1.20723 0.89724 1.03501 1.02940 1.20212 0.97479 0.91821 1.02391 1.20958 0.91804 0.98163 0.95561 1.18889 0.93182 0.90368 1.12406 1.20859 0.80204 0.89457 0.71709 1.90879 1.69611 1.33647 1.46919 1.84583 1.21213 1.40722 1.85960 1.21156 1.00188 0.90180 0.95695 1.20264 0.93233 0.96288 1.02359 1.20719 0.99424 0.93850 1.02889 1.18909 0.89561 0.86474 0.94132 1.85957 1.73654 1.33532 1.32466 1.23253 0.98436 0.96936 0.80735 1.19113 0.95376 0.88653 0.97911 1.21014 1.36794 1.06715 0.91857 0.92404 1.24977 0.95550 0.96802 0.96790 1.69982 1.38777 1.17032 1.26937 0.86460 0.78200 0.79095 0.83798 1.19656 1.20845 1.20839 0.90897 0.90022 0.91505 0.84446 0.72996 0.84399 0.90944 0.91541 0.90088 0.93864 0.93859 0.95459 0.95454 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.78 36.01 0.35 -1.16 16 2 C -0.12 -1.74 5.89 -104.54 -0.62 -2.36 16 3 C -0.05 -0.63 9.23 -39.20 -0.36 -0.99 16 4 C -0.15 -1.92 5.87 -104.98 -0.62 -2.54 16 5 C 0.53 6.48 8.26 34.49 0.28 6.77 16 6 O -0.52 -7.57 17.13 -19.27 -0.33 -7.90 16 7 O -0.51 -4.51 12.67 -40.63 -0.51 -5.02 16 8 C -0.05 -0.67 9.25 -39.21 -0.36 -1.04 16 9 C -0.12 -1.73 5.89 -104.54 -0.62 -2.34 16 10 C -0.11 -1.46 9.78 36.01 0.35 -1.10 16 11 C 0.15 2.51 5.67 -39.01 -0.22 2.29 16 12 O -0.34 -6.44 8.11 -18.80 -0.15 -6.60 16 13 C 0.08 1.62 6.00 37.16 0.22 1.85 16 14 C 0.03 0.67 5.34 -27.89 -0.15 0.52 16 15 C -0.53 -14.33 9.11 -34.44 -0.31 -14.64 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 19 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.08 1.22 7.53 -51.93 -0.39 0.83 16 25 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 26 H 0.14 1.70 7.64 -52.49 -0.40 1.30 16 27 H 0.41 1.66 9.11 45.56 0.42 2.08 16 28 H 0.14 1.42 7.60 -52.49 -0.40 1.02 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.08 1.18 7.52 -51.93 -0.39 0.79 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -31.42 318.08 -6.71 -38.14 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.08 Total: -0.97 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -2.14 Total: -13.15 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.74 Total: -25.22 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -1.00 Total: -19.52 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.42 -6.71 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020424721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.362 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds