Wall clock time and date at job start Mon Mar 30 2020 06:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37685 * 119.94979 * 2 1 4 4 C 1.39796 * 119.90418 * 180.02562 * 3 2 1 5 5 C 1.47460 * 120.09196 * 179.97438 * 4 3 2 6 6 O 1.21503 * 120.00106 * 359.97438 * 5 4 3 7 7 O 1.34750 * 120.00061 * 179.97438 * 5 4 3 8 8 C 1.39794 * 119.81323 * 359.97438 * 4 3 2 9 9 C 1.37676 * 119.90821 * 0.02562 * 8 4 3 10 10 C 1.50701 * 119.95590 * 179.97438 * 9 8 4 11 11 C 1.39011 * 119.95405 * 180.02562 * 2 1 3 12 12 O 1.35700 * 119.90942 * 0.02562 * 11 2 1 13 13 C 1.42895 * 116.99906 * 89.99985 * 12 11 2 14 14 C 1.52998 * 109.47312 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47367 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00096 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00072 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00068 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00146 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47109 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47234 * 119.99833 * 19 17 15 22 22 H 1.48498 * 109.47539 * 240.00252 * 19 17 15 23 23 H 1.08997 * 109.47077 * 89.99903 * 1 2 3 24 24 H 1.09002 * 109.46606 * 210.00358 * 1 2 3 25 25 H 1.09003 * 109.46796 * 329.99735 * 1 2 3 26 26 H 1.08000 * 120.04787 * 359.72242 * 3 2 1 27 27 H 0.96701 * 117.00406 * 180.02562 * 7 5 4 28 28 H 1.08002 * 120.04419 * 180.02562 * 8 4 3 29 29 H 1.09000 * 109.46727 * 269.98191 * 10 9 8 30 30 H 1.09003 * 109.47057 * 29.97964 * 10 9 8 31 31 H 1.08992 * 109.47494 * 149.98025 * 10 9 8 32 32 H 1.09001 * 109.47518 * 300.00407 * 13 12 11 33 33 H 1.09001 * 109.47263 * 59.99555 * 13 12 11 34 34 H 1.08996 * 109.46965 * 300.00009 * 14 13 12 35 35 H 1.08993 * 109.47065 * 59.99869 * 14 13 12 36 36 H 0.97001 * 120.00105 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1930 0.0000 4 6 3.5924 1.1919 -0.0005 5 6 4.3327 2.4671 -0.0011 6 8 3.7278 3.5209 -0.0016 7 8 5.6802 2.4639 -0.0011 8 6 4.2864 -0.0216 -0.0005 9 6 3.5913 -1.2100 -0.0005 10 6 4.3384 -2.5188 -0.0011 11 6 2.2011 -1.2044 -0.0005 12 8 1.5198 -2.3780 -0.0016 13 6 1.1946 -2.9382 -1.2753 14 6 0.4325 -4.2498 -1.0761 15 6 0.0901 -4.8408 -2.4193 16 1 0.3860 -4.3317 -3.3246 17 6 -0.6011 -6.0316 -2.4926 18 7 -0.9620 -6.6513 -1.3902 19 14 -1.0262 -6.7639 -4.1576 20 1 -0.5118 -5.8789 -5.2336 21 1 -0.4033 -8.1064 -4.2816 22 1 -2.5007 -6.8890 -4.2816 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6544 2.1283 -0.0045 27 1 6.1214 3.3244 -0.0011 28 1 5.3664 -0.0268 -0.0005 29 1 4.5178 -2.8342 -1.0289 30 1 5.2919 -2.3931 0.5121 31 1 3.7461 -3.2755 0.5130 32 1 0.5723 -2.2377 -1.8322 33 1 2.1116 -3.1313 -1.8321 34 1 1.0545 -4.9504 -0.5192 35 1 -0.4844 -4.0562 -0.5195 36 1 -1.4479 -7.4893 -1.4417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020424721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:59 Heat of formation + Delta-G solvation = -146.319589 kcal Electronic energy + Delta-G solvation = -19303.869555 eV Core-core repulsion = 16137.725277 eV Total energy + Delta-G solvation = -3166.144278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.69737 -40.74784 -38.35335 -37.10150 -35.43520 -34.69509 -32.89417 -31.78807 -28.35946 -27.76596 -26.87032 -25.22427 -23.01118 -22.16780 -21.64945 -19.22414 -19.00918 -18.13784 -17.84328 -17.42616 -16.75458 -16.61460 -15.96312 -15.55466 -15.13707 -14.84997 -14.40686 -14.30837 -14.15215 -14.06506 -13.81896 -13.30907 -13.20634 -12.89071 -12.85042 -12.72019 -12.71564 -12.46691 -12.37263 -12.09220 -11.76917 -11.52193 -11.39874 -10.83741 -10.55346 -9.74984 -9.67875 -8.24337 -6.37317 -0.52641 0.21116 1.33824 1.42450 1.42791 1.56020 2.02377 2.32808 2.46705 2.93907 3.10279 3.64042 3.66975 4.02902 4.08839 4.24494 4.34150 4.35932 4.40755 4.55983 4.66502 4.71666 4.76547 4.78436 4.83511 5.08834 5.12796 5.27044 5.28911 5.35975 5.44634 5.54130 5.55905 5.57757 5.76839 6.10976 6.58502 6.77999 6.95486 7.32782 8.88443 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033774 B = 0.003836 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.841125 B = 7297.730323 C = 7551.813390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.123 4.123 3 C -0.049 4.049 4 C -0.147 4.147 5 C 0.542 3.458 6 O -0.546 6.546 7 O -0.501 6.501 8 C -0.043 4.043 9 C -0.124 4.124 10 C -0.111 4.111 11 C 0.116 3.884 12 O -0.352 6.352 13 C 0.098 3.902 14 C 0.032 3.968 15 C -0.544 4.544 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.971 3.029 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.149 0.851 27 H 0.435 0.565 28 H 0.167 0.833 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.000 1.000 35 H -0.001 1.001 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.269 15.871 2.000 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.123 4.123 3 C -0.067 4.067 4 C -0.148 4.148 5 C 0.388 3.612 6 O -0.439 6.439 7 O -0.315 6.315 8 C -0.061 4.061 9 C -0.124 4.124 10 C -0.168 4.168 11 C 0.072 3.928 12 O -0.270 6.270 13 C 0.025 3.975 14 C -0.005 4.005 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.795 3.205 20 H -0.183 1.183 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.166 0.834 27 H 0.297 0.703 28 H 0.185 0.815 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.018 0.982 35 H 0.017 0.983 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.785 15.515 2.211 19.608 hybrid contribution -0.275 -0.069 -0.606 0.669 sum 11.510 15.446 1.605 19.330 Atomic orbital electron populations 1.20727 0.89389 1.03611 1.03073 1.20315 0.97952 0.91807 1.02261 1.21073 0.92361 0.97946 0.95297 1.19121 0.93260 0.91285 1.11115 1.20593 0.81108 0.88452 0.71084 1.90883 1.70455 1.34347 1.48204 1.84521 1.19296 1.42654 1.84998 1.21378 1.01431 0.89048 0.94255 1.20434 0.92517 0.97548 1.01930 1.20736 1.00269 0.92628 1.03130 1.19198 0.90564 0.85756 0.97256 1.85918 1.74441 1.35169 1.31423 1.22749 0.98114 0.94873 0.81787 1.18923 0.94219 0.90672 0.96721 1.21420 1.36809 1.07177 0.92735 0.91523 1.25964 0.95273 0.97273 1.00906 1.70117 1.39610 1.17613 1.29530 0.85308 0.77983 0.78295 0.78900 1.18330 1.20252 1.20336 0.90745 0.92200 0.89060 0.83359 0.70286 0.81539 0.90691 0.88502 0.92515 0.93370 0.93121 0.98174 0.98300 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.01 9.78 71.24 0.70 -2.32 16 2 C -0.12 -3.56 5.89 -19.81 -0.12 -3.68 16 3 C -0.05 -1.24 9.23 22.52 0.21 -1.03 16 4 C -0.15 -3.47 5.87 -20.09 -0.12 -3.59 16 5 C 0.54 11.59 8.26 70.25 0.58 12.17 16 6 O -0.55 -14.61 17.13 19.82 0.34 -14.27 16 7 O -0.50 -6.85 12.67 -56.60 -0.72 -7.56 16 8 C -0.04 -0.96 9.25 22.51 0.21 -0.75 16 9 C -0.12 -3.38 5.89 -19.81 -0.12 -3.50 16 10 C -0.11 -2.76 9.78 71.24 0.70 -2.07 16 11 C 0.12 3.79 5.67 22.64 0.13 3.92 16 12 O -0.35 -13.88 8.11 -90.20 -0.73 -14.61 16 13 C 0.10 4.14 6.00 71.98 0.43 4.57 16 14 C 0.03 1.69 5.34 29.85 0.16 1.85 16 15 C -0.54 -30.15 9.11 25.60 0.23 -29.91 16 16 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 17 C 0.00 0.25 5.46 84.65 0.46 0.71 16 18 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 19 Si 0.97 42.98 29.54 68.60 2.03 45.00 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 1.87 7.53 -2.39 -0.02 1.85 16 25 H 0.09 1.95 8.08 -2.39 -0.02 1.93 16 26 H 0.15 3.41 7.64 -2.91 -0.02 3.39 16 27 H 0.43 1.78 9.11 -74.06 -0.67 1.11 16 28 H 0.17 2.73 7.60 -2.91 -0.02 2.70 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.10 1.77 8.08 -2.39 -0.02 1.75 16 31 H 0.06 1.69 7.52 -2.39 -0.02 1.67 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -68.67 318.08 5.07 -63.60 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 0.42 Total: 6.82 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: 3.45 Total: -23.62 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.28 Total: -55.35 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.11 Total: -36.44 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -68.67 5.07 -63.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020424721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.722 kcal (2) G-P(sol) polarization free energy of solvation -68.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds