Wall clock time and date at job start Mon Mar 30 2020 06:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36000 * 117.00160 * 2 1 4 4 C 1.38462 * 119.98830 * 0.02562 * 3 2 1 5 5 C 1.38581 * 120.39944 * 179.97438 * 4 3 2 6 6 C 1.37679 * 120.38501 * 0.03860 * 5 4 3 7 7 C 1.40067 * 119.97292 * 359.97438 * 6 5 4 8 8 C 1.46792 * 120.19978 * 179.97438 * 7 6 5 9 9 O 1.21299 * 120.00376 * 179.97438 * 8 7 6 10 10 C 1.50703 * 119.99912 * 359.97438 * 8 7 6 11 11 H 1.09002 * 109.47152 * 330.00098 * 10 8 7 12 12 C 1.53000 * 109.46912 * 90.00326 * 10 8 7 13 13 C 1.50699 * 109.47227 * 210.00215 * 10 8 7 14 14 H 1.07999 * 120.00019 * 359.97438 * 13 10 8 15 15 C 1.37877 * 120.00129 * 180.02562 * 13 10 8 16 16 N 1.31519 * 119.99723 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99900 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47112 * 60.00201 * 17 15 13 19 19 H 1.48503 * 109.47000 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46939 * 299.99464 * 17 15 13 21 21 C 1.39119 * 119.99459 * 180.25767 * 3 2 1 22 22 O 1.35690 * 120.18848 * 0.04271 * 21 3 2 23 23 C 1.42907 * 117.00112 * 270.22795 * 22 21 3 24 24 H 1.09004 * 109.47060 * 299.99507 * 1 2 3 25 25 H 1.08996 * 109.47335 * 59.99749 * 1 2 3 26 26 H 1.09002 * 109.46823 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.80664 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.80420 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.01261 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47194 * 299.99742 * 12 10 8 31 31 H 1.08992 * 109.47399 * 59.99914 * 12 10 8 32 32 H 1.09004 * 109.46724 * 180.02562 * 12 10 8 33 33 H 0.97003 * 119.99231 * 179.97438 * 16 15 13 34 34 H 1.08996 * 109.46837 * 179.97438 * 23 22 21 35 35 H 1.08998 * 109.47313 * 300.00372 * 23 22 21 36 36 H 1.08994 * 109.46551 * 60.00414 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2922 2.3729 0.0005 5 6 1.9125 3.6121 0.0011 6 6 3.2862 3.7032 0.0003 7 6 4.0648 2.5388 -0.0005 8 6 5.5298 2.6302 -0.0019 9 8 6.2006 1.6195 -0.0022 10 6 6.2007 3.9797 -0.0031 11 1 5.5649 4.7010 -0.5166 12 6 6.4291 4.4368 1.4390 13 6 7.5254 3.8815 -0.7148 14 1 7.8494 2.9364 -1.1248 15 6 8.3243 4.9981 -0.8415 16 7 7.9299 6.1489 -0.3417 17 14 9.9667 4.8762 -1.7230 18 1 9.7455 4.4327 -3.1228 19 1 10.6277 6.2061 -1.7242 20 1 10.8324 3.8934 -1.0231 21 6 3.4358 1.2844 -0.0054 22 8 4.1784 0.1488 -0.0116 23 6 4.5344 -0.4006 1.2587 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2138 2.3125 0.0005 28 1 1.3147 4.5116 0.0019 29 1 3.7634 4.6721 0.0003 30 1 5.4709 4.5079 1.9538 31 1 7.0647 3.7156 1.9525 32 1 6.9139 5.4131 1.4381 33 1 8.4922 6.9344 -0.4305 34 1 5.1253 -1.3045 1.1109 35 1 5.1193 0.3288 1.8190 36 1 3.6296 -0.6453 1.8151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:14 Heat of formation + Delta-G solvation = -82.824190 kcal Electronic energy + Delta-G solvation = -20197.564211 eV Core-core repulsion = 17034.173300 eV Total energy + Delta-G solvation = -3163.390911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45880 -38.65781 -37.37482 -36.54580 -33.74213 -31.12800 -30.15630 -29.64469 -27.40947 -26.53122 -25.17174 -24.05739 -22.22327 -21.47089 -19.15909 -17.70315 -16.92784 -16.61960 -16.04876 -15.93985 -15.07441 -14.99278 -14.71985 -14.48893 -14.39524 -13.71597 -13.22895 -13.02813 -12.70714 -12.33789 -12.24168 -11.73996 -11.66074 -11.49579 -11.09129 -11.03069 -10.91404 -10.69808 -10.65187 -10.22748 -10.04616 -9.67538 -8.98026 -8.62983 -8.47862 -8.23573 -8.03818 -6.02741 -4.07083 0.94771 1.45577 3.14191 3.19923 3.36439 3.38824 3.44776 3.84494 4.24817 4.44756 4.76282 4.88915 5.00877 5.07146 5.20960 5.28987 5.31897 5.43457 5.46886 5.59194 5.71132 5.75197 5.99762 6.20973 6.29262 6.55795 6.60884 6.66912 6.82250 6.90586 7.01095 7.21727 7.51584 7.77202 7.88003 8.01638 8.26777 8.69405 8.97264 9.57403 11.04126 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.005385 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.712497 B = 5197.927652 C = 5687.674392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.087 3.913 4 C -0.182 4.182 5 C -0.103 4.103 6 C -0.092 4.092 7 C -0.137 4.137 8 C 0.393 3.607 9 O -0.441 6.441 10 C 0.009 3.991 11 H 0.052 0.948 12 C -0.129 4.129 13 C -0.505 4.505 14 H 0.066 0.934 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.112 3.888 22 O -0.311 6.311 23 C 0.050 3.950 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.147 0.853 30 H 0.013 0.987 31 H 0.032 0.968 32 H 0.094 0.906 33 H 0.262 0.738 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.508 -6.376 3.398 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.042 3.958 4 C -0.201 4.201 5 C -0.121 4.121 6 C -0.110 4.110 7 C -0.139 4.139 8 C 0.270 3.730 9 O -0.314 6.314 10 C -0.010 4.010 11 H 0.070 0.930 12 C -0.187 4.187 13 C -0.543 4.543 14 H 0.084 0.916 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.067 3.933 22 O -0.226 6.226 23 C -0.044 4.044 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.113 0.887 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.927 -7.037 3.264 16.822 hybrid contribution 0.352 0.301 -0.290 0.546 sum -14.575 -6.737 2.974 16.329 Atomic orbital electron populations 1.23045 0.78978 1.03730 1.01147 1.86169 1.20764 1.26268 1.89016 1.19353 0.91426 0.84919 1.00108 1.21240 0.99796 0.92011 1.07031 1.20929 0.94673 0.96872 0.99664 1.21573 0.93188 0.98673 0.97612 1.21494 0.98122 0.91905 1.02384 1.23200 0.85549 0.93498 0.70786 1.90404 1.66763 1.39480 1.34781 1.19133 0.96872 0.89161 0.95857 0.93046 1.21677 0.97977 1.04138 0.94858 1.21031 1.01959 0.96075 1.35204 0.91607 1.24918 0.98276 0.95172 0.95558 1.69855 1.37895 0.99896 1.45658 0.86546 0.83585 0.76999 0.80279 1.20188 1.21294 1.20147 1.18341 0.86089 0.86744 1.02164 1.85986 1.70044 1.37543 1.29075 1.22817 0.98688 0.98521 0.84398 0.92861 0.92725 0.88401 0.85176 0.85127 0.83571 0.96793 0.94926 0.88700 0.92859 0.89138 0.93411 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.43 10.28 -34.30 -0.35 -4.78 16 3 C 0.09 1.38 6.69 -39.17 -0.26 1.12 16 4 C -0.18 -2.36 9.03 -39.37 -0.36 -2.72 16 5 C -0.10 -1.38 10.02 -39.66 -0.40 -1.77 16 6 C -0.09 -1.53 9.35 -39.10 -0.37 -1.90 16 7 C -0.14 -2.73 5.88 -104.97 -0.62 -3.34 16 8 C 0.39 9.24 6.16 -30.85 -0.19 9.05 16 9 O -0.44 -11.31 13.61 -16.39 -0.22 -11.53 16 10 C 0.01 0.21 2.07 -92.92 -0.19 0.02 16 11 H 0.05 1.29 6.46 -51.93 -0.34 0.95 16 12 C -0.13 -3.03 8.95 37.16 0.33 -2.70 16 13 C -0.50 -14.27 8.32 -34.44 -0.29 -14.56 16 14 H 0.07 1.95 7.14 -52.49 -0.37 1.57 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -24.91 11.32 55.43 0.63 -24.29 16 17 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.11 2.13 5.76 -38.47 -0.22 1.91 16 22 O -0.31 -6.24 8.62 -47.39 -0.41 -6.65 16 23 C 0.05 0.82 10.49 101.05 1.06 1.88 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.13 1.24 6.26 -52.48 -0.33 0.91 16 28 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 29 H 0.15 2.39 6.35 -52.49 -0.33 2.06 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 0.83 7.50 -51.93 -0.39 0.45 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 304.70 15.07 4.59 4.59 Total: -1.00 -32.12 304.70 -5.93 -38.05 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.54 Total: -1.95 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -0.60 Total: -10.17 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.63 Total: -24.29 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.98 Total: -22.96 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.12 -5.93 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.776 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds