Wall clock time and date at job start Mon Mar 30 2020 06:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36000 * 117.00160 * 2 1 4 4 C 1.38462 * 119.98830 * 0.02562 * 3 2 1 5 5 C 1.38581 * 120.39944 * 179.97438 * 4 3 2 6 6 C 1.37679 * 120.38501 * 0.03860 * 5 4 3 7 7 C 1.40067 * 119.97292 * 359.97438 * 6 5 4 8 8 C 1.46792 * 120.19978 * 179.97438 * 7 6 5 9 9 O 1.21299 * 120.00376 * 179.97438 * 8 7 6 10 10 C 1.50703 * 119.99912 * 359.97438 * 8 7 6 11 11 H 1.09002 * 109.47152 * 330.00098 * 10 8 7 12 12 C 1.53000 * 109.46912 * 90.00326 * 10 8 7 13 13 C 1.50699 * 109.47227 * 210.00215 * 10 8 7 14 14 H 1.07999 * 120.00019 * 359.97438 * 13 10 8 15 15 C 1.37877 * 120.00129 * 180.02562 * 13 10 8 16 16 N 1.31519 * 119.99723 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99900 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47112 * 60.00201 * 17 15 13 19 19 H 1.48503 * 109.47000 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46939 * 299.99464 * 17 15 13 21 21 C 1.39119 * 119.99459 * 180.25767 * 3 2 1 22 22 O 1.35690 * 120.18848 * 0.04271 * 21 3 2 23 23 C 1.42907 * 117.00112 * 270.22795 * 22 21 3 24 24 H 1.09004 * 109.47060 * 299.99507 * 1 2 3 25 25 H 1.08996 * 109.47335 * 59.99749 * 1 2 3 26 26 H 1.09002 * 109.46823 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.80664 * 359.97438 * 4 3 2 28 28 H 1.08003 * 119.80420 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.01261 * 179.97438 * 6 5 4 30 30 H 1.09001 * 109.47194 * 299.99742 * 12 10 8 31 31 H 1.08992 * 109.47399 * 59.99914 * 12 10 8 32 32 H 1.09004 * 109.46724 * 180.02562 * 12 10 8 33 33 H 0.97003 * 119.99231 * 179.97438 * 16 15 13 34 34 H 1.08996 * 109.46837 * 179.97438 * 23 22 21 35 35 H 1.08998 * 109.47313 * 300.00372 * 23 22 21 36 36 H 1.08994 * 109.46551 * 60.00414 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2922 2.3729 0.0005 5 6 1.9125 3.6121 0.0011 6 6 3.2862 3.7032 0.0003 7 6 4.0648 2.5388 -0.0005 8 6 5.5298 2.6302 -0.0019 9 8 6.2006 1.6195 -0.0022 10 6 6.2007 3.9797 -0.0031 11 1 5.5649 4.7010 -0.5166 12 6 6.4291 4.4368 1.4390 13 6 7.5254 3.8815 -0.7148 14 1 7.8494 2.9364 -1.1248 15 6 8.3243 4.9981 -0.8415 16 7 7.9299 6.1489 -0.3417 17 14 9.9667 4.8762 -1.7230 18 1 9.7455 4.4327 -3.1228 19 1 10.6277 6.2061 -1.7242 20 1 10.8324 3.8934 -1.0231 21 6 3.4358 1.2844 -0.0054 22 8 4.1784 0.1488 -0.0116 23 6 4.5344 -0.4006 1.2587 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2138 2.3125 0.0005 28 1 1.3147 4.5116 0.0019 29 1 3.7634 4.6721 0.0003 30 1 5.4709 4.5079 1.9538 31 1 7.0647 3.7156 1.9525 32 1 6.9139 5.4131 1.4381 33 1 8.4922 6.9344 -0.4305 34 1 5.1253 -1.3045 1.1109 35 1 5.1193 0.3288 1.8190 36 1 3.6296 -0.6453 1.8151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426654.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:13 Heat of formation + Delta-G solvation = -102.026668 kcal Electronic energy + Delta-G solvation = -20198.396893 eV Core-core repulsion = 17034.173300 eV Total energy + Delta-G solvation = -3164.223593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72345 -40.10890 -38.81632 -37.78848 -35.78258 -32.90667 -31.52336 -30.98407 -28.26809 -27.79977 -27.27061 -25.64683 -23.55803 -22.93249 -20.64062 -19.09630 -18.45752 -18.10474 -17.60606 -17.02461 -16.78890 -16.45449 -16.13490 -15.69282 -15.63799 -15.41457 -15.03185 -14.46707 -14.24284 -13.59784 -13.48136 -13.27297 -13.00992 -12.93684 -12.72862 -12.64455 -12.61907 -12.23430 -12.12205 -12.01648 -11.95801 -11.06243 -11.04417 -10.55014 -10.08200 -9.89988 -9.19684 -8.15416 -6.27071 -0.39276 0.26444 1.40150 1.41560 1.49674 1.63455 2.21685 2.42114 2.52380 2.94902 3.12977 3.40330 3.90980 4.01906 4.15283 4.29685 4.35498 4.38668 4.43899 4.45155 4.47639 4.67534 4.71053 4.76401 4.82961 4.98230 5.03601 5.14752 5.25542 5.37024 5.48237 5.62244 5.70230 5.94253 6.16772 6.23416 6.62223 6.75620 6.91364 7.39821 8.89669 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.005385 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.712497 B = 5197.927652 C = 5687.674392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.087 3.913 4 C -0.159 4.159 5 C -0.087 4.087 6 C -0.099 4.099 7 C -0.171 4.171 8 C 0.393 3.607 9 O -0.479 6.479 10 C 0.004 3.996 11 H 0.049 0.951 12 C -0.116 4.116 13 C -0.535 4.535 14 H 0.040 0.960 15 C 0.025 3.975 16 N -0.907 5.907 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.272 1.272 20 H -0.279 1.279 21 C 0.084 3.916 22 O -0.340 6.340 23 C 0.051 3.949 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.177 0.823 28 H 0.176 0.824 29 H 0.143 0.857 30 H 0.045 0.955 31 H 0.017 0.983 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.103 0.897 35 H 0.026 0.974 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.488 -5.860 3.452 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.244 6.244 3 C 0.041 3.959 4 C -0.177 4.177 5 C -0.104 4.104 6 C -0.118 4.118 7 C -0.172 4.172 8 C 0.272 3.728 9 O -0.356 6.356 10 C -0.014 4.014 11 H 0.067 0.933 12 C -0.174 4.174 13 C -0.572 4.572 14 H 0.058 0.942 15 C -0.175 4.175 16 N -0.545 5.545 17 Si 0.778 3.222 18 H -0.200 1.200 19 H -0.196 1.196 20 H -0.204 1.204 21 C 0.039 3.961 22 O -0.256 6.256 23 C -0.043 4.043 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.135 0.865 27 H 0.194 0.806 28 H 0.193 0.807 29 H 0.160 0.840 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.045 0.955 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.932 -6.505 3.325 19.363 hybrid contribution 1.110 0.110 -0.297 1.154 sum -16.822 -6.395 3.028 18.250 Atomic orbital electron populations 1.23454 0.75961 1.05804 1.02793 1.86149 1.23820 1.25725 1.88727 1.19353 0.90388 0.86591 0.99577 1.21759 1.01860 0.90556 1.03574 1.21379 0.93237 0.98843 0.96965 1.21650 0.94812 0.97259 0.98053 1.21142 0.95782 0.93912 1.06395 1.23231 0.87772 0.92166 0.69585 1.90367 1.68141 1.40084 1.37002 1.19107 0.95712 0.90502 0.96127 0.93268 1.21491 0.99134 1.02357 0.94381 1.21196 1.04074 0.95407 1.36569 0.94164 1.25549 1.01084 0.94835 0.96050 1.69925 1.38800 1.00141 1.45663 0.85701 0.79931 0.77472 0.79093 1.20033 1.19630 1.20425 1.18586 0.87733 0.85970 1.03791 1.85918 1.70829 1.38216 1.30666 1.22898 0.99564 0.98232 0.83616 0.90842 0.91183 0.86452 0.80579 0.80710 0.83978 0.93631 0.96344 0.90496 0.92440 0.87838 0.95481 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.30 16 2 O -0.33 -8.62 10.28 -79.63 -0.82 -9.44 16 3 C 0.09 2.55 6.69 22.53 0.15 2.70 16 4 C -0.16 -3.40 9.03 22.41 0.20 -3.20 16 5 C -0.09 -1.95 10.02 22.22 0.22 -1.72 16 6 C -0.10 -3.17 9.35 22.58 0.21 -2.96 16 7 C -0.17 -6.89 5.88 -20.09 -0.12 -7.01 16 8 C 0.39 19.38 6.16 27.93 0.17 19.55 16 9 O -0.48 -26.21 13.61 17.88 0.24 -25.96 16 10 C 0.00 0.23 2.07 -12.29 -0.03 0.20 16 11 H 0.05 2.54 6.46 -2.39 -0.02 2.53 16 12 C -0.12 -5.61 8.95 71.98 0.64 -4.96 16 13 C -0.53 -31.51 8.32 25.60 0.21 -31.29 16 14 H 0.04 2.52 7.14 -2.91 -0.02 2.50 16 15 C 0.02 1.39 5.30 84.65 0.45 1.84 16 16 N -0.91 -50.97 11.32 21.45 0.24 -50.72 16 17 Si 0.95 45.24 29.54 68.60 2.03 47.26 16 18 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 C 0.08 3.22 5.76 22.99 0.13 3.35 16 22 O -0.34 -14.09 8.62 -62.72 -0.54 -14.63 16 23 C 0.05 1.72 10.49 113.37 1.19 2.91 16 24 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 25 H 0.07 0.74 7.66 -2.39 -0.02 0.73 16 26 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.18 2.15 6.26 -2.91 -0.02 2.13 16 28 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.14 4.56 6.35 -2.91 -0.02 4.54 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 3.99 6.07 -2.39 -0.01 3.98 16 33 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 34 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.03 1.00 7.50 -2.39 -0.02 0.98 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -73.44 304.70 6.80 -66.64 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.09 Total: 6.16 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 4.56 Total: -19.31 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.24 Total: -50.72 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -1.12 Total: -50.03 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -73.44 6.80 -66.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426654.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.382 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds