Wall clock time and date at job start Mon Mar 30 2020 06:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36001 * 117.00458 * 2 1 4 4 C 1.38463 * 119.99043 * 0.02562 * 3 2 1 5 5 C 1.38578 * 120.40486 * 179.97438 * 4 3 2 6 6 C 1.37680 * 120.38117 * 0.29902 * 5 4 3 7 7 C 1.40066 * 119.97293 * 359.42945 * 6 5 4 8 8 C 1.46804 * 120.20051 * 180.29986 * 7 6 5 9 9 O 1.21293 * 119.99945 * 180.24578 * 8 7 6 10 10 C 1.50699 * 119.99548 * 0.24487 * 8 7 6 11 11 H 1.09003 * 109.47281 * 35.00252 * 10 8 7 12 12 C 1.53004 * 109.47283 * 275.00003 * 10 8 7 13 13 C 1.50706 * 109.47081 * 155.00128 * 10 8 7 14 14 H 1.08002 * 119.99590 * 359.97438 * 13 10 8 15 15 C 1.37867 * 120.00191 * 179.97438 * 13 10 8 16 16 N 1.31519 * 119.99975 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00145 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.47039 * 59.99809 * 17 15 13 19 19 H 1.48497 * 109.47223 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47128 * 299.99921 * 17 15 13 21 21 C 1.39121 * 119.99517 * 179.97438 * 3 2 1 22 22 O 1.35685 * 120.19163 * 359.97438 * 21 3 2 23 23 C 1.42903 * 117.00314 * 90.00047 * 22 21 3 24 24 H 1.09000 * 109.46780 * 299.99907 * 1 2 3 25 25 H 1.08997 * 109.47100 * 59.99284 * 1 2 3 26 26 H 1.08998 * 109.46979 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.79895 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.80717 * 180.02562 * 5 4 3 29 29 H 1.07993 * 120.01322 * 179.70035 * 6 5 4 30 30 H 1.09000 * 109.46940 * 60.00538 * 12 10 8 31 31 H 1.08996 * 109.47130 * 179.97438 * 12 10 8 32 32 H 1.08997 * 109.46742 * 300.00178 * 12 10 8 33 33 H 0.96998 * 119.99686 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.46334 * 300.00241 * 23 22 21 35 35 H 1.08998 * 109.46674 * 59.99773 * 23 22 21 36 36 H 1.08996 * 109.47058 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2923 2.3729 0.0005 5 6 1.9126 3.6121 0.0011 6 6 3.2864 3.7032 -0.0051 7 6 4.0648 2.5388 0.0001 8 6 5.5300 2.6301 0.0002 9 8 6.2006 1.6194 0.0002 10 6 6.2008 3.9795 0.0002 11 1 5.6087 4.6796 0.5897 12 6 6.3153 4.4923 -1.4368 13 6 7.5775 3.8562 0.6007 14 1 7.9311 2.8966 0.9480 15 6 8.3855 4.9682 0.7068 16 7 7.9547 6.1368 0.2844 17 14 10.0923 4.8151 1.4505 18 1 10.8985 3.8611 0.6473 19 1 10.7537 6.1447 1.4496 20 1 9.9816 4.3178 2.8453 21 6 3.4358 1.2843 0.0005 22 8 4.1785 0.1487 0.0016 23 6 4.5341 -0.3951 -1.2711 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2139 2.3125 0.0005 28 1 1.3149 4.5117 0.0019 29 1 3.7635 4.6719 -0.0095 30 1 5.3196 4.5816 -1.8711 31 1 6.8001 5.4685 -1.4367 32 1 6.9074 3.7922 -2.0262 33 1 8.5234 6.9191 0.3587 34 1 3.6291 -0.6374 -1.8283 35 1 5.1189 0.3367 -1.8283 36 1 5.1251 -1.2997 -1.1274 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:15 Heat of formation + Delta-G solvation = -82.892633 kcal Electronic energy + Delta-G solvation = -20202.701653 eV Core-core repulsion = 17039.307773 eV Total energy + Delta-G solvation = -3163.393879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46064 -38.65988 -37.37592 -36.54703 -33.74369 -31.14781 -30.15701 -29.62506 -27.40958 -26.53129 -25.16325 -24.05211 -22.20725 -21.49133 -19.17021 -17.68746 -16.93197 -16.61675 -16.04486 -15.94521 -15.04756 -14.99596 -14.72466 -14.48425 -14.39579 -13.73983 -13.24159 -13.02719 -12.70222 -12.35398 -12.23018 -11.74198 -11.66584 -11.48714 -11.08847 -11.02968 -10.91637 -10.68854 -10.65226 -10.23462 -10.03116 -9.67418 -8.97716 -8.62962 -8.47756 -8.23600 -8.03834 -6.02221 -4.06457 0.94663 1.45354 3.14111 3.19819 3.36727 3.39129 3.45040 3.84070 4.25087 4.44881 4.76230 4.88843 5.00763 5.06950 5.20883 5.29577 5.31878 5.43321 5.46757 5.59150 5.71046 5.75211 5.99900 6.20871 6.29173 6.55670 6.60547 6.66982 6.81230 6.90443 7.00255 7.21594 7.51615 7.77857 7.87914 8.02008 8.26974 8.69940 8.98585 9.58240 11.04747 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.031644 B = 0.005384 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.630467 B = 5199.554037 C = 5724.869759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.087 3.913 4 C -0.182 4.182 5 C -0.103 4.103 6 C -0.092 4.092 7 C -0.137 4.137 8 C 0.393 3.607 9 O -0.440 6.440 10 C 0.008 3.992 11 H 0.052 0.948 12 C -0.129 4.129 13 C -0.505 4.505 14 H 0.067 0.933 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.112 3.888 22 O -0.311 6.311 23 C 0.050 3.950 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.146 0.854 30 H 0.014 0.986 31 H 0.094 0.906 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.634 -6.337 -3.221 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.042 3.958 4 C -0.201 4.201 5 C -0.121 4.121 6 C -0.110 4.110 7 C -0.139 4.139 8 C 0.269 3.731 9 O -0.313 6.313 10 C -0.010 4.010 11 H 0.070 0.930 12 C -0.187 4.187 13 C -0.543 4.543 14 H 0.085 0.915 15 C -0.139 4.139 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.066 3.934 22 O -0.227 6.227 23 C -0.044 4.044 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.164 0.836 30 H 0.033 0.967 31 H 0.113 0.887 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.052 -6.999 -3.086 16.884 hybrid contribution 0.386 0.290 0.216 0.529 sum -14.666 -6.709 -2.869 16.381 Atomic orbital electron populations 1.23044 0.78980 1.03731 1.01146 1.86169 1.20761 1.26269 1.89012 1.19351 0.91417 0.84918 1.00102 1.21238 0.99796 0.92008 1.07045 1.20926 0.94672 0.96871 0.99672 1.21558 0.93186 0.98651 0.97646 1.21496 0.98127 0.91901 1.02373 1.23204 0.85525 0.93521 0.70864 1.90401 1.66746 1.39471 1.34699 1.19125 0.96893 0.89121 0.95901 0.92973 1.21684 0.97772 1.04063 0.95150 1.21057 0.98400 0.95394 1.39474 0.91469 1.24917 0.98493 0.95142 0.95392 1.69852 1.37115 0.99204 1.47197 0.86548 0.84004 0.76991 0.79869 1.20168 1.21314 1.20190 1.18337 0.86091 0.86748 1.02181 1.85981 1.70042 1.37603 1.29033 1.22819 0.98690 0.98604 0.84306 0.92735 0.92855 0.88399 0.85179 0.85132 0.83609 0.96708 0.88697 0.94988 0.92875 0.94490 0.93401 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.42 10.28 -34.30 -0.35 -4.78 16 3 C 0.09 1.38 6.69 -39.17 -0.26 1.12 16 4 C -0.18 -2.36 9.03 -39.37 -0.36 -2.72 16 5 C -0.10 -1.37 10.02 -39.66 -0.40 -1.77 16 6 C -0.09 -1.52 9.34 -39.10 -0.37 -1.89 16 7 C -0.14 -2.72 5.88 -104.96 -0.62 -3.34 16 8 C 0.39 9.21 6.21 -30.85 -0.19 9.02 16 9 O -0.44 -11.28 13.47 -16.38 -0.22 -11.50 16 10 C 0.01 0.21 1.92 -92.92 -0.18 0.03 16 11 H 0.05 1.31 6.75 -51.93 -0.35 0.96 16 12 C -0.13 -3.02 8.95 37.16 0.33 -2.69 16 13 C -0.51 -14.30 8.33 -34.44 -0.29 -14.58 16 14 H 0.07 1.99 7.03 -52.49 -0.37 1.62 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 17 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.11 2.12 5.76 -38.47 -0.22 1.90 16 22 O -0.31 -6.23 8.62 -47.38 -0.41 -6.64 16 23 C 0.05 0.82 10.49 101.05 1.06 1.88 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.13 1.24 6.26 -52.48 -0.33 0.91 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.15 2.38 6.47 -52.49 -0.34 2.04 16 30 H 0.01 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.84 7.50 -51.93 -0.39 0.45 16 36 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 304.74 15.07 4.59 4.59 Total: -1.00 -32.12 304.74 -5.93 -38.05 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.56 Total: -1.96 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -0.59 Total: -10.19 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.63 Total: -24.32 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.98 Total: -22.92 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.12 -5.93 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.844 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds