Wall clock time and date at job start Mon Mar 30 2020 06:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36001 * 117.00458 * 2 1 4 4 C 1.38463 * 119.99043 * 0.02562 * 3 2 1 5 5 C 1.38578 * 120.40486 * 179.97438 * 4 3 2 6 6 C 1.37680 * 120.38117 * 0.29902 * 5 4 3 7 7 C 1.40066 * 119.97293 * 359.42945 * 6 5 4 8 8 C 1.46804 * 120.20051 * 180.29986 * 7 6 5 9 9 O 1.21293 * 119.99945 * 180.24578 * 8 7 6 10 10 C 1.50699 * 119.99548 * 0.24487 * 8 7 6 11 11 H 1.09003 * 109.47281 * 35.00252 * 10 8 7 12 12 C 1.53004 * 109.47283 * 275.00003 * 10 8 7 13 13 C 1.50706 * 109.47081 * 155.00128 * 10 8 7 14 14 H 1.08002 * 119.99590 * 359.97438 * 13 10 8 15 15 C 1.37867 * 120.00191 * 179.97438 * 13 10 8 16 16 N 1.31519 * 119.99975 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 120.00145 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.47039 * 59.99809 * 17 15 13 19 19 H 1.48497 * 109.47223 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47128 * 299.99921 * 17 15 13 21 21 C 1.39121 * 119.99517 * 179.97438 * 3 2 1 22 22 O 1.35685 * 120.19163 * 359.97438 * 21 3 2 23 23 C 1.42903 * 117.00314 * 90.00047 * 22 21 3 24 24 H 1.09000 * 109.46780 * 299.99907 * 1 2 3 25 25 H 1.08997 * 109.47100 * 59.99284 * 1 2 3 26 26 H 1.08998 * 109.46979 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.79895 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.80717 * 180.02562 * 5 4 3 29 29 H 1.07993 * 120.01322 * 179.70035 * 6 5 4 30 30 H 1.09000 * 109.46940 * 60.00538 * 12 10 8 31 31 H 1.08996 * 109.47130 * 179.97438 * 12 10 8 32 32 H 1.08997 * 109.46742 * 300.00178 * 12 10 8 33 33 H 0.96998 * 119.99686 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.46334 * 300.00241 * 23 22 21 35 35 H 1.08998 * 109.46674 * 59.99773 * 23 22 21 36 36 H 1.08996 * 109.47058 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2923 2.3729 0.0005 5 6 1.9126 3.6121 0.0011 6 6 3.2864 3.7032 -0.0051 7 6 4.0648 2.5388 0.0001 8 6 5.5300 2.6301 0.0002 9 8 6.2006 1.6194 0.0002 10 6 6.2008 3.9795 0.0002 11 1 5.6087 4.6796 0.5897 12 6 6.3153 4.4923 -1.4368 13 6 7.5775 3.8562 0.6007 14 1 7.9311 2.8966 0.9480 15 6 8.3855 4.9682 0.7068 16 7 7.9547 6.1368 0.2844 17 14 10.0923 4.8151 1.4505 18 1 10.8985 3.8611 0.6473 19 1 10.7537 6.1447 1.4496 20 1 9.9816 4.3178 2.8453 21 6 3.4358 1.2843 0.0005 22 8 4.1785 0.1487 0.0016 23 6 4.5341 -0.3951 -1.2711 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 0.2139 2.3125 0.0005 28 1 1.3149 4.5117 0.0019 29 1 3.7635 4.6719 -0.0095 30 1 5.3196 4.5816 -1.8711 31 1 6.8001 5.4685 -1.4367 32 1 6.9074 3.7922 -2.0262 33 1 8.5234 6.9191 0.3587 34 1 3.6291 -0.6374 -1.8283 35 1 5.1189 0.3367 -1.8283 36 1 5.1251 -1.2997 -1.1274 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:15 Heat of formation + Delta-G solvation = -102.112644 kcal Electronic energy + Delta-G solvation = -20203.535095 eV Core-core repulsion = 17039.307773 eV Total energy + Delta-G solvation = -3164.227321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.72355 -40.10874 -38.81628 -37.78829 -35.78202 -32.92634 -31.51233 -30.97009 -28.26665 -27.80045 -27.25827 -25.63865 -23.54114 -22.95129 -20.64814 -19.07769 -18.44301 -18.10984 -17.61165 -17.02692 -16.77913 -16.43807 -16.13567 -15.69747 -15.63861 -15.43326 -15.04589 -14.45072 -14.24442 -13.61069 -13.47750 -13.25894 -13.00716 -12.93598 -12.72737 -12.64066 -12.59820 -12.23502 -12.11325 -12.01550 -11.96012 -11.05992 -11.04348 -10.54926 -10.08275 -9.89748 -9.19457 -8.15081 -6.26617 -0.39104 0.26518 1.40130 1.41519 1.49782 1.63370 2.21864 2.42285 2.52021 2.95246 3.13416 3.40348 3.91124 4.02046 4.15643 4.29871 4.35425 4.38720 4.43917 4.45145 4.47744 4.68039 4.71200 4.76461 4.82266 4.99294 5.03723 5.14903 5.25338 5.37170 5.48868 5.62537 5.70743 5.95134 6.16907 6.23953 6.62316 6.76519 6.91901 7.40474 8.90048 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.031644 B = 0.005384 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.630467 B = 5199.554037 C = 5724.869759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.087 3.913 4 C -0.159 4.159 5 C -0.087 4.087 6 C -0.099 4.099 7 C -0.170 4.170 8 C 0.392 3.608 9 O -0.478 6.478 10 C 0.005 3.995 11 H 0.048 0.952 12 C -0.115 4.115 13 C -0.535 4.535 14 H 0.041 0.959 15 C 0.024 3.976 16 N -0.907 5.907 17 Si 0.952 3.048 18 H -0.278 1.278 19 H -0.272 1.272 20 H -0.275 1.275 21 C 0.084 3.916 22 O -0.340 6.340 23 C 0.051 3.949 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.177 0.823 28 H 0.176 0.824 29 H 0.142 0.858 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.017 0.983 33 H 0.266 0.734 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.618 -5.817 -3.307 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.244 6.244 3 C 0.041 3.959 4 C -0.178 4.178 5 C -0.104 4.104 6 C -0.117 4.117 7 C -0.172 4.172 8 C 0.272 3.728 9 O -0.355 6.355 10 C -0.014 4.014 11 H 0.066 0.934 12 C -0.173 4.173 13 C -0.573 4.573 14 H 0.060 0.940 15 C -0.175 4.175 16 N -0.546 5.546 17 Si 0.778 3.222 18 H -0.204 1.204 19 H -0.197 1.197 20 H -0.201 1.201 21 C 0.039 3.961 22 O -0.256 6.256 23 C -0.043 4.043 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.135 0.865 27 H 0.194 0.806 28 H 0.193 0.807 29 H 0.160 0.840 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.062 -6.464 -3.177 19.445 hybrid contribution 1.144 0.098 0.238 1.173 sum -16.918 -6.365 -2.939 18.313 Atomic orbital electron populations 1.23453 0.75964 1.05800 1.02793 1.86149 1.23817 1.25736 1.88726 1.19352 0.90379 0.86588 0.99577 1.21757 1.01857 0.90557 1.03588 1.21378 0.93243 0.98837 0.96962 1.21637 0.94800 0.97241 0.98069 1.21137 0.95759 0.93907 1.06383 1.23239 0.87762 0.92181 0.69653 1.90366 1.68135 1.40080 1.36934 1.19092 0.95568 0.90441 0.96321 0.93378 1.21494 0.99195 1.02272 0.94367 1.21226 1.00575 0.94674 1.40849 0.94025 1.25546 1.01577 0.94832 0.95589 1.69922 1.38116 0.99459 1.47086 0.85705 0.80102 0.77471 0.78936 1.20400 1.19653 1.20089 1.18583 0.87734 0.85977 1.03818 1.85913 1.70828 1.38283 1.30605 1.22898 0.99561 0.98304 0.83534 0.91182 0.90844 0.86458 0.80589 0.80707 0.83986 0.93429 0.90536 0.96350 0.92464 0.92317 0.95508 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.30 16 2 O -0.33 -8.61 10.28 -79.64 -0.82 -9.43 16 3 C 0.09 2.54 6.69 22.54 0.15 2.69 16 4 C -0.16 -3.39 9.03 22.40 0.20 -3.19 16 5 C -0.09 -1.93 10.02 22.22 0.22 -1.71 16 6 C -0.10 -3.15 9.34 22.58 0.21 -2.94 16 7 C -0.17 -6.85 5.88 -20.08 -0.12 -6.97 16 8 C 0.39 19.32 6.21 27.93 0.17 19.50 16 9 O -0.48 -26.19 13.47 17.90 0.24 -25.94 16 10 C 0.00 0.24 1.92 -12.28 -0.02 0.22 16 11 H 0.05 2.50 6.75 -2.39 -0.02 2.49 16 12 C -0.12 -5.55 8.95 71.98 0.64 -4.90 16 13 C -0.54 -31.59 8.33 25.60 0.21 -31.37 16 14 H 0.04 2.61 7.03 -2.91 -0.02 2.59 16 15 C 0.02 1.37 5.30 84.65 0.45 1.82 16 16 N -0.91 -51.05 11.32 21.44 0.24 -50.81 16 17 Si 0.95 45.32 29.54 68.60 2.03 47.35 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 C 0.08 3.20 5.76 22.99 0.13 3.33 16 22 O -0.34 -14.07 8.62 -62.68 -0.54 -14.61 16 23 C 0.05 1.73 10.49 113.37 1.19 2.92 16 24 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 25 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 26 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.18 2.13 6.26 -2.91 -0.02 2.11 16 28 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.14 4.53 6.47 -2.91 -0.02 4.51 16 30 H 0.05 1.91 8.12 -2.39 -0.02 1.89 16 31 H 0.08 3.95 6.07 -2.39 -0.01 3.94 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.03 0.99 7.50 -2.39 -0.02 0.97 16 36 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -73.52 304.74 6.80 -66.72 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.09 Total: 6.03 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 4.56 Total: -19.31 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.24 Total: -50.81 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -1.12 Total: -49.99 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.52 6.80 -66.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.391 kcal (2) G-P(sol) polarization free energy of solvation -73.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds