Wall clock time and date at job start Mon Mar 30 2020 06:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35745 * 116.99698 * 2 1 4 4 C 1.38922 * 119.90478 * 0.02605 * 3 2 1 5 5 C 1.37676 * 120.17769 * 180.02562 * 4 3 2 6 6 C 1.40006 * 119.97602 * 359.97438 * 5 4 3 7 7 C 1.46859 * 120.09837 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00465 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99816 * 359.97438 * 7 6 5 10 10 H 1.09001 * 109.47217 * 35.00036 * 9 7 6 11 11 C 1.53003 * 109.47190 * 275.00035 * 9 7 6 12 12 C 1.50702 * 109.47113 * 155.00433 * 9 7 6 13 13 H 1.07992 * 120.00144 * 359.97438 * 12 9 7 14 14 C 1.37883 * 120.00091 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99486 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99976 * 179.97438 * 14 12 9 17 17 H 1.48493 * 109.47145 * 89.99845 * 16 14 12 18 18 H 1.48497 * 109.46997 * 210.00074 * 16 14 12 19 19 H 1.48501 * 109.46973 * 329.99607 * 16 14 12 20 20 C 1.40037 * 119.80670 * 359.72946 * 6 5 4 21 21 C 1.38036 * 119.82392 * 0.54383 * 20 6 5 22 22 O 1.35991 * 119.98952 * 179.75171 * 21 20 6 23 23 C 1.42903 * 117.00364 * 359.72541 * 22 21 20 24 24 H 1.08999 * 109.47534 * 59.99972 * 1 2 3 25 25 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46955 * 299.99471 * 1 2 3 27 27 H 1.08006 * 119.91162 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.00815 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47041 * 300.00108 * 11 9 7 30 30 H 1.09002 * 109.47007 * 60.00550 * 11 9 7 31 31 H 1.09007 * 109.47347 * 179.97438 * 11 9 7 32 32 H 0.97008 * 119.99616 * 179.97438 * 15 14 12 33 33 H 1.08006 * 120.09257 * 180.29759 * 20 6 5 34 34 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 35 35 H 1.09001 * 109.46938 * 59.99845 * 23 22 21 36 36 H 1.09004 * 109.46926 * 299.99967 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2866 2.3733 0.0005 5 6 1.9058 3.6030 0.0000 6 6 3.3036 3.6824 -0.0005 7 6 3.9668 4.9927 -0.0005 8 8 5.1779 5.0596 -0.0015 9 6 3.1426 6.2544 -0.0005 10 1 2.2391 6.0982 0.5889 11 6 2.7584 6.6126 -1.4375 12 6 3.9459 7.3792 0.5999 13 1 4.9524 7.1985 0.9471 14 6 3.3956 8.6389 0.7068 15 7 2.1696 8.8588 0.2844 16 14 4.3911 10.0330 1.4517 17 1 5.1503 10.7265 0.3803 18 1 3.4753 10.9969 2.1129 19 1 5.3392 9.4836 2.4540 20 6 4.0675 2.5088 0.0052 21 6 3.4383 1.2802 0.0000 22 8 4.1769 0.1383 0.0004 23 6 5.5984 0.2849 0.0003 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.2082 2.3133 0.0014 28 1 1.3133 4.5060 0.0000 29 1 3.6618 6.7688 -2.0270 30 1 2.1772 5.7991 -1.8718 31 1 2.1618 7.5250 -1.4375 32 1 1.7822 9.7450 0.3600 33 1 5.1461 2.5647 0.0097 34 1 6.0653 -0.7000 0.0011 35 1 5.9070 0.8337 0.8901 36 1 5.9070 0.8330 -0.8900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:18 Heat of formation + Delta-G solvation = -87.441619 kcal Electronic energy + Delta-G solvation = -19738.895448 eV Core-core repulsion = 16575.304311 eV Total energy + Delta-G solvation = -3163.591138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52093 -38.64972 -38.37134 -36.20467 -33.81013 -31.01897 -30.24972 -29.86394 -27.36995 -27.22052 -25.18555 -23.83789 -22.21543 -21.47445 -19.20662 -18.22988 -16.79468 -16.70882 -16.14474 -16.07147 -15.25372 -15.13637 -14.71988 -14.67097 -14.43013 -13.74646 -13.48838 -12.89710 -12.57600 -12.56115 -12.43593 -12.08417 -11.53723 -11.36542 -11.20348 -11.10879 -10.98926 -10.82348 -10.69496 -10.62138 -10.26815 -10.06059 -8.98962 -8.63665 -8.54816 -8.30864 -7.71688 -6.05001 -4.09451 1.06956 1.50161 3.12300 3.21633 3.30667 3.31969 3.37796 3.43636 4.12967 4.41588 4.81421 4.85644 4.97756 5.07582 5.15688 5.19932 5.21447 5.28277 5.36923 5.41821 5.52249 5.54871 5.75457 6.00224 6.33369 6.53721 6.63909 6.70835 6.79150 6.89816 6.98913 7.04079 7.49662 7.58936 7.75802 7.99420 8.23743 8.64287 8.95574 9.55323 11.01922 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.027795 B = 0.004910 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.129837 B = 5701.109909 C = 6429.058036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.116 3.884 4 C -0.189 4.189 5 C -0.061 4.061 6 C -0.153 4.153 7 C 0.400 3.600 8 O -0.465 6.465 9 C 0.006 3.994 10 H 0.053 0.947 11 C -0.129 4.129 12 C -0.506 4.506 13 H 0.067 0.933 14 C 0.061 3.939 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.124 4.124 21 C 0.079 3.921 22 O -0.310 6.310 23 C 0.025 3.975 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.031 0.969 30 H 0.015 0.985 31 H 0.094 0.906 32 H 0.261 0.739 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -15.837 -1.323 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.070 3.930 4 C -0.208 4.208 5 C -0.079 4.079 6 C -0.154 4.154 7 C 0.278 3.722 8 O -0.341 6.341 9 C -0.013 4.013 10 H 0.071 0.929 11 C -0.187 4.187 12 C -0.544 4.544 13 H 0.085 0.915 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.143 4.143 21 C 0.034 3.966 22 O -0.225 6.225 23 C -0.070 4.070 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.156 0.844 28 H 0.163 0.837 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.801 -16.050 -1.331 16.347 hybrid contribution 0.332 1.055 0.378 1.168 sum -2.469 -14.995 -0.953 15.227 Atomic orbital electron populations 1.23079 0.78624 1.03768 1.01513 1.86093 1.21021 1.26234 1.88689 1.18476 0.89040 0.85102 1.00377 1.21049 0.99987 0.91311 1.08409 1.21411 0.93759 0.97715 0.95018 1.20853 0.94274 0.95603 1.04680 1.23280 0.89577 0.89818 0.69504 1.90355 1.17200 1.89798 1.36736 1.19137 0.96143 0.90035 0.95967 0.92907 1.21684 1.00072 1.01837 0.95095 1.21091 1.00658 0.93159 1.39500 0.91484 1.24930 0.95013 0.98643 0.95402 1.69864 1.13920 1.22297 1.47188 0.86487 0.79882 0.81647 0.79417 1.20607 1.21225 1.19815 1.21374 1.01006 0.90208 1.01684 1.18056 0.88176 0.85941 1.04416 1.86117 1.18666 1.28083 1.89587 1.23061 0.78717 1.03542 1.01661 0.92552 0.88393 0.92527 0.84404 0.83665 0.94937 0.96623 0.88725 0.92904 0.83942 0.88376 0.92587 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.23 10.26 -33.62 -0.34 -4.57 16 3 C 0.12 1.76 6.71 -38.86 -0.26 1.50 16 4 C -0.19 -2.67 9.01 -39.53 -0.36 -3.03 16 5 C -0.06 -1.00 9.34 -39.12 -0.37 -1.37 16 6 C -0.15 -2.91 5.87 -105.07 -0.62 -3.52 16 7 C 0.40 9.15 6.21 -30.82 -0.19 8.95 16 8 O -0.47 -11.68 15.80 5.55 0.09 -11.59 16 9 C 0.01 0.15 1.92 -92.92 -0.18 -0.03 16 10 H 0.05 1.31 6.73 -51.93 -0.35 0.96 16 11 C -0.13 -3.02 8.95 37.16 0.33 -2.69 16 12 C -0.51 -14.17 8.33 -34.44 -0.29 -14.45 16 13 H 0.07 1.96 7.03 -52.49 -0.37 1.59 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 15 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.12 -2.15 8.58 -38.98 -0.33 -2.48 16 21 C 0.08 1.28 6.69 -39.19 -0.26 1.02 16 22 O -0.31 -4.67 10.27 -34.39 -0.35 -5.02 16 23 C 0.03 0.28 9.81 101.05 0.99 1.28 16 24 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 27 H 0.14 1.50 6.27 -52.48 -0.33 1.17 16 28 H 0.15 2.36 6.45 -52.49 -0.34 2.02 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.01 0.30 8.13 -51.93 -0.42 -0.12 16 31 H 0.09 2.39 6.07 -51.92 -0.32 2.08 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.14 2.38 5.87 -52.48 -0.31 2.07 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 36 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 LS Contribution 304.96 15.07 4.60 4.60 Total: -1.00 -31.75 304.96 -5.47 -37.21 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.42 Total: -0.97 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.63 Total: -12.02 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.63 Total: -24.13 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.61 Total: -21.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.75 -5.47 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.227 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds