Wall clock time and date at job start Mon Mar 30 2020 06:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35745 * 116.99698 * 2 1 4 4 C 1.38922 * 119.90478 * 0.02605 * 3 2 1 5 5 C 1.37676 * 120.17769 * 180.02562 * 4 3 2 6 6 C 1.40006 * 119.97602 * 359.97438 * 5 4 3 7 7 C 1.46859 * 120.09837 * 180.02562 * 6 5 4 8 8 O 1.21294 * 120.00465 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99816 * 359.97438 * 7 6 5 10 10 H 1.09001 * 109.47217 * 35.00036 * 9 7 6 11 11 C 1.53003 * 109.47190 * 275.00035 * 9 7 6 12 12 C 1.50702 * 109.47113 * 155.00433 * 9 7 6 13 13 H 1.07992 * 120.00144 * 359.97438 * 12 9 7 14 14 C 1.37883 * 120.00091 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99486 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99976 * 179.97438 * 14 12 9 17 17 H 1.48493 * 109.47145 * 89.99845 * 16 14 12 18 18 H 1.48497 * 109.46997 * 210.00074 * 16 14 12 19 19 H 1.48501 * 109.46973 * 329.99607 * 16 14 12 20 20 C 1.40037 * 119.80670 * 359.72946 * 6 5 4 21 21 C 1.38036 * 119.82392 * 0.54383 * 20 6 5 22 22 O 1.35991 * 119.98952 * 179.75171 * 21 20 6 23 23 C 1.42903 * 117.00364 * 359.72541 * 22 21 20 24 24 H 1.08999 * 109.47534 * 59.99972 * 1 2 3 25 25 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46955 * 299.99471 * 1 2 3 27 27 H 1.08006 * 119.91162 * 0.02562 * 4 3 2 28 28 H 1.07997 * 120.00815 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47041 * 300.00108 * 11 9 7 30 30 H 1.09002 * 109.47007 * 60.00550 * 11 9 7 31 31 H 1.09007 * 109.47347 * 179.97438 * 11 9 7 32 32 H 0.97008 * 119.99616 * 179.97438 * 15 14 12 33 33 H 1.08006 * 120.09257 * 180.29759 * 20 6 5 34 34 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 35 35 H 1.09001 * 109.46938 * 59.99845 * 23 22 21 36 36 H 1.09004 * 109.46926 * 299.99967 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2866 2.3733 0.0005 5 6 1.9058 3.6030 0.0000 6 6 3.3036 3.6824 -0.0005 7 6 3.9668 4.9927 -0.0005 8 8 5.1779 5.0596 -0.0015 9 6 3.1426 6.2544 -0.0005 10 1 2.2391 6.0982 0.5889 11 6 2.7584 6.6126 -1.4375 12 6 3.9459 7.3792 0.5999 13 1 4.9524 7.1985 0.9471 14 6 3.3956 8.6389 0.7068 15 7 2.1696 8.8588 0.2844 16 14 4.3911 10.0330 1.4517 17 1 5.1503 10.7265 0.3803 18 1 3.4753 10.9969 2.1129 19 1 5.3392 9.4836 2.4540 20 6 4.0675 2.5088 0.0052 21 6 3.4383 1.2802 0.0000 22 8 4.1769 0.1383 0.0004 23 6 5.5984 0.2849 0.0003 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 0.2082 2.3133 0.0014 28 1 1.3133 4.5060 0.0000 29 1 3.6618 6.7688 -2.0270 30 1 2.1772 5.7991 -1.8718 31 1 2.1618 7.5250 -1.4375 32 1 1.7822 9.7450 0.3600 33 1 5.1461 2.5647 0.0097 34 1 6.0653 -0.7000 0.0011 35 1 5.9070 0.8337 0.8901 36 1 5.9070 0.8330 -0.8900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:18 Heat of formation + Delta-G solvation = -106.762476 kcal Electronic energy + Delta-G solvation = -19739.733264 eV Core-core repulsion = 16575.304311 eV Total energy + Delta-G solvation = -3164.428953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.72849 -40.24053 -39.47804 -37.50864 -35.82264 -32.83454 -31.50700 -31.21927 -28.41140 -28.10796 -27.24815 -25.37403 -23.61816 -22.82739 -20.72775 -19.43756 -18.43552 -18.09514 -17.66498 -17.10002 -16.80216 -16.54842 -16.18401 -15.80511 -15.53942 -15.45711 -15.22081 -14.42695 -14.06858 -13.81409 -13.58921 -13.36034 -13.08610 -12.96331 -12.66526 -12.63096 -12.40581 -12.23946 -12.12160 -12.11673 -12.02122 -11.93107 -11.03167 -10.55925 -10.19298 -9.86555 -8.92887 -8.14756 -6.26325 -0.30985 0.27142 1.40406 1.41513 1.51877 1.58181 2.22566 2.27560 2.42121 2.73706 3.13790 3.31792 3.73934 3.95071 4.08181 4.22515 4.33403 4.33802 4.45762 4.47056 4.52401 4.58487 4.69263 4.74973 4.79833 4.96427 5.03988 5.07420 5.17057 5.34246 5.47303 5.55145 5.71260 5.95679 6.01058 6.23378 6.48994 6.76624 6.88573 7.40914 8.90469 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.027795 B = 0.004910 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.129837 B = 5701.109909 C = 6429.058036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.125 3.875 4 C -0.177 4.177 5 C -0.058 4.058 6 C -0.182 4.182 7 C 0.402 3.598 8 O -0.503 6.503 9 C 0.001 3.999 10 H 0.051 0.949 11 C -0.117 4.117 12 C -0.535 4.535 13 H 0.043 0.957 14 C 0.023 3.977 15 N -0.907 5.907 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.273 1.273 19 H -0.277 1.277 20 C -0.126 4.126 21 C 0.071 3.929 22 O -0.320 6.320 23 C 0.018 3.982 24 H 0.071 0.929 25 H 0.122 0.878 26 H 0.070 0.930 27 H 0.177 0.823 28 H 0.147 0.853 29 H 0.018 0.982 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.266 0.734 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.055 0.945 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.850 -17.279 -1.306 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.195 4.195 5 C -0.077 4.077 6 C -0.183 4.183 7 C 0.284 3.716 8 O -0.381 6.381 9 C -0.018 4.018 10 H 0.069 0.931 11 C -0.175 4.175 12 C -0.573 4.573 13 H 0.062 0.938 14 C -0.177 4.177 15 N -0.546 5.546 16 Si 0.779 3.221 17 H -0.202 1.202 18 H -0.198 1.198 19 H -0.202 1.202 20 C -0.145 4.145 21 C 0.025 3.975 22 O -0.235 6.235 23 C -0.077 4.077 24 H 0.089 0.911 25 H 0.140 0.860 26 H 0.088 0.912 27 H 0.194 0.806 28 H 0.164 0.836 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.350 -17.504 -1.318 18.085 hybrid contribution 0.718 1.339 0.371 1.564 sum -3.632 -16.165 -0.946 16.595 Atomic orbital electron populations 1.23493 0.75863 1.06005 1.02850 1.86098 1.23840 1.25367 1.88001 1.18670 0.88936 0.86102 0.98428 1.21335 1.01742 0.89735 1.06696 1.21460 0.92616 0.98948 0.94647 1.20474 0.95384 0.93868 1.08564 1.23279 0.88960 0.91075 0.68332 1.90325 1.18429 1.90416 1.38977 1.19123 0.95908 0.90431 0.96333 0.93094 1.21513 0.99471 1.02113 0.94428 1.21269 1.00252 0.95006 1.40760 0.93825 1.25565 0.96034 1.00426 0.95632 1.69934 1.14578 1.22947 1.47163 0.85634 0.78727 0.79118 0.78658 1.20210 1.19821 1.20232 1.21303 1.00910 0.90342 1.01984 1.18186 0.89112 0.85773 1.04385 1.86107 1.20356 1.27602 1.89417 1.23332 0.77040 1.05557 1.01722 0.91080 0.85958 0.91181 0.80586 0.83552 0.96272 0.93372 0.90583 0.92506 0.84275 0.85263 0.92626 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -7.79 10.26 -76.66 -0.79 -8.58 16 3 C 0.13 3.50 6.71 22.73 0.15 3.65 16 4 C -0.18 -4.48 9.01 22.30 0.20 -4.28 16 5 C -0.06 -1.85 9.34 22.57 0.21 -1.64 16 6 C -0.18 -6.94 5.87 -20.16 -0.12 -7.06 16 7 C 0.40 18.96 6.21 27.94 0.17 19.14 16 8 O -0.50 -26.40 15.80 -3.07 -0.05 -26.45 16 9 C 0.00 0.04 1.92 -12.28 -0.02 0.02 16 10 H 0.05 2.57 6.73 -2.39 -0.02 2.55 16 11 C -0.12 -5.55 8.95 71.98 0.64 -4.90 16 12 C -0.53 -30.83 8.33 25.60 0.21 -30.62 16 13 H 0.04 2.66 7.03 -2.91 -0.02 2.64 16 14 C 0.02 1.28 5.30 84.66 0.45 1.73 16 15 N -0.91 -50.38 11.32 21.45 0.24 -50.13 16 16 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 C -0.13 -4.39 8.58 22.66 0.19 -4.19 16 21 C 0.07 2.21 6.69 22.52 0.15 2.36 16 22 O -0.32 -9.21 10.27 -79.42 -0.82 -10.02 16 23 C 0.02 0.38 9.81 113.37 1.11 1.49 16 24 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 25 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 27 H 0.18 3.03 6.27 -2.91 -0.02 3.01 16 28 H 0.15 4.57 6.45 -2.91 -0.02 4.55 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 1.90 8.13 -2.39 -0.02 1.88 16 31 H 0.08 3.88 6.07 -2.38 -0.01 3.86 16 32 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 33 H 0.14 4.78 5.87 -2.91 -0.02 4.77 16 34 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.18 7.65 -2.39 -0.02 1.16 16 36 H 0.06 1.19 7.67 -2.38 -0.02 1.18 16 Total: -1.00 -69.42 304.96 6.18 -63.24 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.09 Total: 8.48 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 4.47 Total: -23.03 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.24 Total: -50.13 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.65 Total: -45.05 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.42 6.18 -63.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.523 kcal (2) G-P(sol) polarization free energy of solvation -69.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds