Wall clock time and date at job start Mon Mar 30 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46983 * 2 1 4 4 C 1.50696 * 109.47279 * 180.02562 * 3 2 1 5 5 C 1.38401 * 120.03789 * 270.30046 * 4 3 2 6 6 O 1.35616 * 120.19176 * 0.02562 * 5 4 3 7 7 C 1.40665 * 119.61136 * 180.27209 * 5 4 3 8 8 C 1.46489 * 120.15232 * 179.71976 * 7 5 4 9 9 C 1.50699 * 119.99591 * 179.72569 * 8 7 5 10 10 O 1.21342 * 120.00079 * 0.02562 * 8 7 5 11 11 C 1.40208 * 119.69016 * 359.44671 * 7 5 4 12 12 C 1.36393 * 120.07125 * 0.24967 * 11 7 5 13 13 C 1.38872 * 120.04706 * 89.99436 * 4 3 2 14 14 O 1.35539 * 119.84092 * 359.97438 * 13 4 3 15 15 C 1.34801 * 116.99967 * 174.39184 * 14 13 4 16 16 H 1.08005 * 120.00248 * 5.06092 * 15 14 13 17 17 C 1.38726 * 120.00073 * 185.06616 * 15 14 13 18 18 N 1.31508 * 120.00095 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00063 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47090 * 59.99863 * 19 17 15 21 21 H 1.48506 * 109.47346 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47338 * 299.99881 * 19 17 15 23 23 H 1.09008 * 109.47068 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47383 * 299.99974 * 1 2 3 25 25 H 1.08994 * 109.47488 * 60.00596 * 1 2 3 26 26 H 1.08992 * 109.47531 * 239.99740 * 2 1 3 27 27 H 1.09007 * 109.47255 * 119.99620 * 2 1 3 28 28 H 1.08997 * 109.47632 * 59.99374 * 3 2 1 29 29 H 1.09007 * 109.46815 * 299.99889 * 3 2 1 30 30 H 0.96702 * 113.99896 * 270.25607 * 6 5 4 31 31 H 1.09000 * 109.47363 * 60.00249 * 9 8 7 32 32 H 1.09000 * 109.46755 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.47258 * 299.99761 * 9 8 7 34 34 H 1.08004 * 119.95987 * 180.27927 * 11 7 5 35 35 H 1.07997 * 119.79852 * 180.02562 * 12 11 7 36 36 H 0.96999 * 119.99866 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2402 1.4361 1.1972 6 8 3.5673 1.4292 2.3746 7 6 5.6468 1.4421 1.1862 8 6 6.3925 1.4416 2.4470 9 6 7.8994 1.4417 2.4311 10 8 5.7969 1.4356 3.5042 11 6 6.3317 1.4427 -0.0373 12 6 5.6356 1.4427 -1.2102 13 6 4.2417 1.4427 -1.2030 14 8 3.5612 1.4422 -2.3752 15 6 4.2877 1.5597 -3.5046 16 1 5.3666 1.5664 -3.4546 17 6 3.6496 1.6721 -4.7313 18 7 2.3360 1.6635 -4.7924 19 14 4.6563 1.8356 -6.2963 20 1 5.5261 0.6421 -6.4523 21 1 3.7438 1.9385 -7.4634 22 1 5.4993 3.0555 -6.2174 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6765 1.9564 0.8899 29 1 1.6765 1.9563 -0.8901 30 1 3.3683 2.3106 2.7191 31 1 8.2573 2.3319 1.9139 32 1 8.2735 1.4417 3.4549 33 1 8.2574 0.5520 1.9131 34 1 7.4116 1.4427 -0.0508 35 1 6.1676 1.4427 -2.1500 36 1 1.8898 1.7417 -5.6501 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034144132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:12 Heat of formation + Delta-G solvation = -102.861085 kcal Electronic energy + Delta-G solvation = -20003.771883 eV Core-core repulsion = 16839.512107 eV Total energy + Delta-G solvation = -3164.259776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.96495 -38.52287 -37.31306 -35.35744 -34.42872 -32.55840 -30.87263 -29.68715 -28.24854 -25.94746 -25.35125 -22.65127 -21.76013 -20.65233 -18.94835 -18.68449 -17.29848 -16.41157 -15.84996 -15.54845 -14.81465 -14.48978 -14.29388 -14.13875 -13.88565 -13.70138 -13.46816 -13.29086 -12.61855 -12.25268 -11.95732 -11.89705 -11.84985 -11.70741 -11.32826 -11.20823 -10.88708 -10.83179 -10.62885 -10.53473 -10.35691 -9.99340 -9.50477 -9.05253 -9.00882 -8.03949 -7.41265 -6.71710 -4.27065 1.39333 2.00309 2.93999 2.99788 3.03989 3.11273 3.75362 4.27314 4.58899 4.68567 4.89047 5.19277 5.34211 5.37628 5.57729 5.59232 5.61165 5.70439 5.80709 5.81300 6.03084 6.11390 6.27805 6.32277 6.39212 6.43270 6.44401 6.70076 6.76423 6.88266 6.93696 7.05390 7.07655 7.22916 7.41879 7.72693 8.14870 8.23556 8.72439 9.37814 10.43956 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.006642 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.272016 B = 4214.735778 C = 5666.273501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.053 4.053 4 C -0.201 4.201 5 C 0.211 3.789 6 O -0.480 6.480 7 C -0.306 4.306 8 C 0.398 3.602 9 C -0.197 4.197 10 O -0.479 6.479 11 C -0.014 4.014 12 C -0.252 4.252 13 C 0.190 3.810 14 O -0.148 6.148 15 C -0.396 4.396 16 H 0.098 0.902 17 C 0.045 3.955 18 N -0.845 5.845 19 Si 0.944 3.056 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.267 1.267 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.384 0.616 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 0.727 5.669 7.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.090 4.090 4 C -0.203 4.203 5 C 0.165 3.835 6 O -0.290 6.290 7 C -0.309 4.309 8 C 0.280 3.720 9 C -0.254 4.254 10 O -0.358 6.358 11 C -0.033 4.033 12 C -0.271 4.271 13 C 0.132 3.868 14 O -0.048 6.048 15 C -0.471 4.471 16 H 0.115 0.885 17 C -0.162 4.162 18 N -0.477 5.477 19 Si 0.768 3.232 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.192 1.192 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.241 0.759 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.037 0.111 5.877 7.131 hybrid contribution 0.694 0.539 -0.954 1.298 sum 4.732 0.650 4.923 6.859 Atomic orbital electron populations 1.21744 0.96476 1.00855 1.01393 1.21418 0.94892 0.96959 1.01768 1.20096 0.90139 0.96985 1.01789 1.19187 0.96257 1.14987 0.89893 1.18015 0.88199 0.93169 0.84142 1.84683 1.76346 1.32588 1.35387 1.20173 0.93273 1.22860 0.94593 1.21949 0.90686 0.71478 0.87899 1.22214 0.95463 1.03890 1.03865 1.90500 1.72666 1.38995 1.33674 1.20612 0.98638 0.93083 0.90945 1.20859 0.93872 1.13376 0.98981 1.19205 0.90264 0.90537 0.86782 1.83902 1.35379 1.74440 1.11051 1.21479 0.91543 1.52316 0.81797 0.88473 1.25396 0.96190 0.95818 0.98844 1.70000 1.07646 1.42981 1.27110 0.85722 0.78898 0.79471 0.79114 1.19210 1.20033 1.19206 0.93423 0.93352 0.92581 0.91879 0.92568 0.92424 0.90678 0.75906 0.89586 0.90718 0.89568 0.86304 0.84869 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 37.16 0.37 -1.96 16 2 C -0.11 -2.08 5.92 -26.73 -0.16 -2.24 16 3 C -0.05 -1.02 4.89 -27.89 -0.14 -1.16 16 4 C -0.20 -4.18 5.16 -104.33 -0.54 -4.72 16 5 C 0.21 4.10 6.69 -38.61 -0.26 3.85 16 6 O -0.48 -8.72 10.63 -40.49 -0.43 -9.15 16 7 C -0.31 -5.59 5.88 -104.92 -0.62 -6.21 16 8 C 0.40 6.68 7.21 -30.99 -0.22 6.46 16 9 C -0.20 -2.36 8.92 36.00 0.32 -2.04 16 10 O -0.48 -9.36 15.89 -16.44 -0.26 -9.62 16 11 C -0.01 -0.24 9.41 -39.51 -0.37 -0.61 16 12 C -0.25 -5.02 9.09 -39.82 -0.36 -5.39 16 13 C 0.19 4.29 6.63 -38.92 -0.26 4.03 16 14 O -0.15 -3.85 8.78 0.78 0.01 -3.84 16 15 C -0.40 -10.10 9.48 30.91 0.29 -9.81 16 16 H 0.10 2.26 5.17 -52.48 -0.27 1.99 16 17 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 18 N -0.85 -22.82 13.67 55.48 0.76 -22.06 16 19 Si 0.94 18.85 29.55 -169.99 -5.02 13.82 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 28 H 0.06 0.99 7.55 -51.93 -0.39 0.60 16 29 H 0.07 1.60 7.53 -51.92 -0.39 1.21 16 30 H 0.38 5.45 9.06 45.56 0.41 5.87 16 31 H 0.09 0.87 8.08 -51.93 -0.42 0.46 16 32 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 33 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.12 1.59 7.03 -52.48 -0.37 1.22 16 35 H 0.13 2.57 5.60 -52.49 -0.29 2.28 16 36 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -29.84 309.74 -6.13 -35.97 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.81 Total: 8.96 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.04 Total: -18.76 kcal Atomic # 7 Polarization: -22.82 SS G_CDS: 0.76 Total: -22.06 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.68 Total: -22.61 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.84 -6.13 -35.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034144132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.887 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds