Wall clock time and date at job start Mon Mar 30 2020 06:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46983 * 2 1 4 4 C 1.50696 * 109.47279 * 180.02562 * 3 2 1 5 5 C 1.38401 * 120.03789 * 270.30046 * 4 3 2 6 6 O 1.35616 * 120.19176 * 0.02562 * 5 4 3 7 7 C 1.40665 * 119.61136 * 180.27209 * 5 4 3 8 8 C 1.46489 * 120.15232 * 179.71976 * 7 5 4 9 9 C 1.50699 * 119.99591 * 179.72569 * 8 7 5 10 10 O 1.21342 * 120.00079 * 0.02562 * 8 7 5 11 11 C 1.40208 * 119.69016 * 359.44671 * 7 5 4 12 12 C 1.36393 * 120.07125 * 0.24967 * 11 7 5 13 13 C 1.38872 * 120.04706 * 89.99436 * 4 3 2 14 14 O 1.35539 * 119.84092 * 359.97438 * 13 4 3 15 15 C 1.34801 * 116.99967 * 174.39184 * 14 13 4 16 16 H 1.08005 * 120.00248 * 5.06092 * 15 14 13 17 17 C 1.38726 * 120.00073 * 185.06616 * 15 14 13 18 18 N 1.31508 * 120.00095 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00063 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47090 * 59.99863 * 19 17 15 21 21 H 1.48506 * 109.47346 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47338 * 299.99881 * 19 17 15 23 23 H 1.09008 * 109.47068 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47383 * 299.99974 * 1 2 3 25 25 H 1.08994 * 109.47488 * 60.00596 * 1 2 3 26 26 H 1.08992 * 109.47531 * 239.99740 * 2 1 3 27 27 H 1.09007 * 109.47255 * 119.99620 * 2 1 3 28 28 H 1.08997 * 109.47632 * 59.99374 * 3 2 1 29 29 H 1.09007 * 109.46815 * 299.99889 * 3 2 1 30 30 H 0.96702 * 113.99896 * 270.25607 * 6 5 4 31 31 H 1.09000 * 109.47363 * 60.00249 * 9 8 7 32 32 H 1.09000 * 109.46755 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.47258 * 299.99761 * 9 8 7 34 34 H 1.08004 * 119.95987 * 180.27927 * 11 7 5 35 35 H 1.07997 * 119.79852 * 180.02562 * 12 11 7 36 36 H 0.96999 * 119.99866 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2402 1.4361 1.1972 6 8 3.5673 1.4292 2.3746 7 6 5.6468 1.4421 1.1862 8 6 6.3925 1.4416 2.4470 9 6 7.8994 1.4417 2.4311 10 8 5.7969 1.4356 3.5042 11 6 6.3317 1.4427 -0.0373 12 6 5.6356 1.4427 -1.2102 13 6 4.2417 1.4427 -1.2030 14 8 3.5612 1.4422 -2.3752 15 6 4.2877 1.5597 -3.5046 16 1 5.3666 1.5664 -3.4546 17 6 3.6496 1.6721 -4.7313 18 7 2.3360 1.6635 -4.7924 19 14 4.6563 1.8356 -6.2963 20 1 5.5261 0.6421 -6.4523 21 1 3.7438 1.9385 -7.4634 22 1 5.4993 3.0555 -6.2174 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6765 1.9564 0.8899 29 1 1.6765 1.9563 -0.8901 30 1 3.3683 2.3106 2.7191 31 1 8.2573 2.3319 1.9139 32 1 8.2735 1.4417 3.4549 33 1 8.2574 0.5520 1.9131 34 1 7.4116 1.4427 -0.0508 35 1 6.1676 1.4427 -2.1500 36 1 1.8898 1.7417 -5.6501 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034144132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:12 Heat of formation + Delta-G solvation = -120.982570 kcal Electronic energy + Delta-G solvation = -20004.557690 eV Core-core repulsion = 16839.512107 eV Total energy + Delta-G solvation = -3165.045583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52555 -40.07899 -38.84132 -36.91732 -35.94162 -34.34941 -32.28496 -31.08868 -29.61707 -27.65410 -26.93273 -24.15981 -23.29707 -22.18897 -20.50074 -20.21060 -18.96770 -18.01403 -17.35401 -17.08413 -16.35786 -16.02721 -15.72480 -15.52944 -15.47220 -15.27204 -14.94898 -14.80960 -14.07032 -13.71136 -13.47236 -13.37473 -12.98273 -12.92912 -12.83670 -12.66738 -12.41241 -12.33051 -12.17523 -12.01795 -11.91166 -11.55055 -11.14622 -10.82925 -10.40892 -9.57108 -9.07627 -8.53198 -6.19381 -0.09873 0.45217 1.37337 1.43068 1.52864 1.65560 2.13728 2.72687 2.98989 3.15296 3.38533 3.64008 3.87622 4.03179 4.16890 4.26428 4.32147 4.40375 4.53832 4.65304 4.74552 4.75966 4.79883 4.83934 4.99072 5.02078 5.05937 5.15521 5.28891 5.33096 5.41663 5.45508 5.54260 5.62657 5.90291 5.93876 6.79884 6.84267 6.90916 7.64387 8.67370 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.006642 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.272016 B = 4214.735778 C = 5666.273501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.049 4.049 4 C -0.216 4.216 5 C 0.205 3.795 6 O -0.485 6.485 7 C -0.301 4.301 8 C 0.399 3.601 9 C -0.190 4.190 10 O -0.507 6.507 11 C 0.004 3.996 12 C -0.261 4.261 13 C 0.164 3.836 14 O -0.197 6.197 15 C -0.420 4.420 16 H 0.112 0.888 17 C -0.013 4.013 18 N -0.906 5.906 19 Si 1.017 2.983 20 H -0.256 1.256 21 H -0.275 1.275 22 H -0.255 1.255 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.402 0.598 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.170 0.830 35 H 0.138 0.862 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.676 0.804 7.248 10.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C -0.086 4.086 4 C -0.218 4.218 5 C 0.159 3.841 6 O -0.298 6.298 7 C -0.304 4.304 8 C 0.282 3.718 9 C -0.247 4.247 10 O -0.388 6.388 11 C -0.015 4.015 12 C -0.280 4.280 13 C 0.110 3.890 14 O -0.100 6.100 15 C -0.495 4.495 16 H 0.129 0.871 17 C -0.213 4.213 18 N -0.541 5.541 19 Si 0.836 3.164 20 H -0.180 1.180 21 H -0.200 1.200 22 H -0.179 1.179 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.261 0.739 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.187 0.813 35 H 0.156 0.844 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.970 0.196 7.515 10.252 hybrid contribution -0.101 0.511 -1.010 1.137 sum 6.869 0.708 6.505 9.487 Atomic orbital electron populations 1.21698 0.94222 1.02121 1.01810 1.21340 0.96897 0.95989 1.00218 1.20056 0.89883 0.97428 1.01215 1.19456 0.96985 1.15150 0.90172 1.18196 0.89117 0.92838 0.83990 1.84635 1.76324 1.34190 1.34623 1.20715 0.93002 1.20325 0.96326 1.22546 0.93054 0.69881 0.86336 1.22228 0.90775 1.06164 1.05501 1.90505 1.73911 1.39947 1.34401 1.21046 1.00945 0.90387 0.89073 1.21072 0.92892 1.13517 1.00516 1.19749 0.91833 0.90847 0.86612 1.83907 1.36521 1.77616 1.11975 1.21979 0.92380 1.52905 0.82275 0.87072 1.26604 0.97276 0.95244 1.02175 1.70150 1.09718 1.46483 1.27781 0.84663 0.77303 0.80081 0.74363 1.18006 1.19960 1.17876 0.91770 0.91223 0.93808 0.95095 0.92198 0.90188 0.93754 0.73875 0.86903 0.89697 0.87276 0.81258 0.84427 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 9.91 71.98 0.71 -3.76 16 2 C -0.11 -4.08 5.92 30.59 0.18 -3.90 16 3 C -0.05 -1.95 4.89 29.85 0.15 -1.80 16 4 C -0.22 -9.12 5.16 -19.67 -0.10 -9.22 16 5 C 0.20 7.72 6.69 22.90 0.15 7.88 16 6 O -0.49 -16.85 10.63 -68.30 -0.73 -17.57 16 7 C -0.30 -10.10 5.88 -20.06 -0.12 -10.22 16 8 C 0.40 11.80 7.21 27.84 0.20 12.00 16 9 C -0.19 -3.46 8.92 71.24 0.64 -2.83 16 10 O -0.51 -18.30 15.89 17.76 0.28 -18.02 16 11 C 0.00 0.11 9.41 22.32 0.21 0.32 16 12 C -0.26 -10.17 9.09 22.12 0.20 -9.97 16 13 C 0.16 7.63 6.63 22.70 0.15 7.78 16 14 O -0.20 -10.89 8.78 -20.13 -0.18 -11.07 16 15 C -0.42 -22.38 9.48 67.94 0.64 -21.74 16 16 H 0.11 5.28 5.17 -2.91 -0.02 5.27 16 17 C -0.01 -0.68 5.49 84.86 0.47 -0.21 16 18 N -0.91 -52.05 13.67 21.62 0.30 -51.76 16 19 Si 1.02 39.46 29.55 68.60 2.03 41.49 16 20 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 21 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 23 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.08 2.76 7.55 -2.39 -0.02 2.74 16 29 H 0.04 2.04 7.53 -2.38 -0.02 2.02 16 30 H 0.40 10.70 9.06 -74.06 -0.67 10.03 16 31 H 0.11 1.54 8.08 -2.39 -0.02 1.52 16 32 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 33 H 0.11 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.17 3.49 7.03 -2.91 -0.02 3.47 16 35 H 0.14 5.19 5.60 -2.91 -0.02 5.17 16 36 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -69.38 309.74 5.62 -63.76 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.44 Total: 28.84 kcal Atomic # 6 Polarization: -39.15 SS G_CDS: 3.48 Total: -35.67 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.30 Total: -51.76 kcal Atomic # 8 Polarization: -46.04 SS G_CDS: -0.62 Total: -46.66 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -69.38 5.62 -63.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034144132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.227 kcal (2) G-P(sol) polarization free energy of solvation -69.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds