Wall clock time and date at job start Mon Mar 30 2020 06:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20827 * 119.99452 * 2 1 4 4 O 1.34232 * 120.00373 * 179.97438 * 2 1 3 5 5 C 1.45200 * 117.00060 * 174.84453 * 4 2 1 6 6 H 1.09001 * 109.46737 * 34.90532 * 5 4 2 7 7 C 1.50698 * 109.47121 * 274.89929 * 5 4 2 8 8 H 1.08000 * 120.00211 * 324.96146 * 7 5 4 9 9 C 1.37884 * 119.99526 * 144.95930 * 7 5 4 10 10 N 1.31509 * 120.00398 * 5.12860 * 9 7 5 11 11 Si 1.86805 * 119.99650 * 185.12737 * 9 7 5 12 12 H 1.48496 * 109.46900 * 60.00302 * 11 9 7 13 13 H 1.48500 * 109.46728 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.46964 * 300.00169 * 11 9 7 15 15 C 1.52998 * 109.46771 * 154.90110 * 5 4 2 16 16 O 1.42901 * 109.46951 * 294.99674 * 15 5 4 17 17 C 1.42904 * 113.99700 * 180.02562 * 16 15 5 18 18 C 1.50702 * 109.46931 * 180.02562 * 17 16 15 19 19 C 1.38235 * 119.99579 * 90.00324 * 18 17 16 20 20 C 1.38245 * 119.99805 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99698 * 0.07188 * 20 19 18 22 22 C 1.38235 * 120.00053 * 359.90425 * 21 20 19 23 23 C 1.38226 * 120.00265 * 269.97742 * 18 17 16 24 24 H 1.08996 * 109.47048 * 239.99690 * 1 2 3 25 25 H 1.08999 * 109.47667 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47079 * 120.00286 * 1 2 3 27 27 H 0.97000 * 120.00370 * 179.97438 * 10 9 7 28 28 H 1.09004 * 109.46837 * 175.00275 * 15 5 4 29 29 H 1.08994 * 109.47133 * 55.00439 * 15 5 4 30 30 H 1.08995 * 109.46983 * 60.00471 * 17 16 15 31 31 H 1.09002 * 109.47105 * 300.00403 * 17 16 15 32 32 H 1.07994 * 120.00445 * 359.69406 * 19 18 17 33 33 H 1.07994 * 120.00209 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.99600 * 179.97438 * 21 20 19 35 35 H 1.08006 * 119.99696 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.99746 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1110 1.0465 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6237 -1.0890 -0.1158 6 1 3.9856 -0.2031 0.4061 7 6 4.0071 -1.0068 -1.5708 8 1 3.4301 -1.5395 -2.3123 9 6 5.0945 -0.2514 -1.9556 10 7 5.8568 0.3149 -1.0458 11 14 5.4851 -0.0326 -3.7692 12 1 4.3367 0.6203 -4.4475 13 1 6.6942 0.8169 -3.9161 14 1 5.7343 -1.3604 -4.3855 15 6 4.2495 -2.3388 0.5067 16 8 3.9835 -2.3558 1.9106 17 6 4.5281 -3.4880 2.5916 18 6 4.1885 -3.4037 4.0574 19 6 3.0204 -3.9721 4.5300 20 6 2.7091 -3.8952 5.8748 21 6 3.5652 -3.2486 6.7465 22 6 4.7335 -2.6807 6.2739 23 6 5.0452 -2.7585 4.9294 24 1 -0.3633 -0.5139 0.8899 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 6.6220 0.8460 -1.3164 28 1 5.3268 -2.3266 0.3411 29 1 3.8209 -3.2282 0.0448 30 1 5.6111 -3.4992 2.4693 31 1 4.1056 -4.4015 2.1730 32 1 2.3488 -4.4722 3.8481 33 1 1.7963 -4.3389 6.2440 34 1 3.3218 -3.1882 7.7969 35 1 5.4026 -2.1759 6.9551 36 1 5.9579 -2.3144 4.5601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034826272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:02 Heat of formation + Delta-G solvation = -117.849935 kcal Electronic energy + Delta-G solvation = -19452.617129 eV Core-core repulsion = 16287.707388 eV Total energy + Delta-G solvation = -3164.909741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.20780 -39.00808 -36.99116 -35.18322 -33.02316 -31.78082 -30.79704 -29.93959 -28.56885 -25.89751 -24.42647 -22.46624 -21.56354 -21.10315 -19.63314 -17.03005 -16.67038 -16.53008 -15.64251 -15.43891 -15.33345 -14.94791 -14.78659 -14.38821 -14.11041 -13.49455 -13.29812 -12.70748 -12.49264 -12.46937 -12.18569 -11.91930 -11.74830 -11.27046 -11.13165 -10.99819 -10.88565 -10.63481 -10.50637 -10.32420 -9.56510 -9.36022 -8.97888 -8.83775 -8.80956 -8.65893 -8.56663 -6.23375 -4.35802 1.40262 1.50596 3.23398 3.29075 3.30893 3.38779 3.79417 4.01831 4.29961 4.59636 4.95045 5.01773 5.09791 5.18899 5.34860 5.48188 5.57170 5.59776 5.77062 5.79186 5.80733 5.88263 6.08842 6.15504 6.21027 6.35950 6.48054 6.55017 6.57261 6.78028 7.08872 7.10916 7.26796 7.67508 7.82606 7.96295 8.12844 8.73111 9.05851 9.37401 10.83770 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.005041 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.687804 B = 5552.592845 C = 6376.420225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.454 3.546 3 O -0.514 6.514 4 O -0.370 6.370 5 C 0.212 3.788 6 H 0.078 0.922 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.076 3.924 10 N -0.872 5.872 11 Si 0.905 3.095 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.081 3.919 16 O -0.385 6.385 17 C 0.099 3.901 18 C -0.078 4.078 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.099 4.099 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.269 0.731 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 -8.156 10.340 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.296 3.704 3 O -0.403 6.403 4 O -0.287 6.287 5 C 0.160 3.840 6 H 0.096 0.904 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.130 4.130 10 N -0.508 5.508 11 Si 0.731 3.269 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.005 3.995 16 O -0.305 6.305 17 C 0.022 3.978 18 C -0.078 4.078 19 C -0.119 4.119 20 C -0.145 4.145 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.118 4.118 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.589 -7.605 10.471 13.731 hybrid contribution 0.529 0.044 -1.104 1.225 sum -4.060 -7.561 9.368 12.705 Atomic orbital electron populations 1.21565 0.89928 1.04374 1.04451 1.23186 0.91110 0.82874 0.73182 1.90637 1.70976 1.33361 1.45357 1.86324 1.26479 1.33882 1.82007 1.20555 0.71869 0.95361 0.96253 0.90394 1.21141 1.14083 1.31657 0.91304 0.91654 1.25042 0.95630 0.93795 0.98505 1.69928 1.15755 1.31519 1.33552 0.86456 0.77955 0.78387 0.84090 1.19814 1.20882 1.19827 1.23052 0.99652 0.99086 0.77740 1.88044 1.77242 1.43002 1.22202 1.21220 0.97666 0.90389 0.88538 1.19787 0.95134 0.98094 0.94803 1.21092 0.95962 0.99318 0.95513 1.21105 0.99602 1.00206 0.93551 1.21123 0.94904 0.98593 0.99495 1.21124 0.97423 1.00230 0.95566 1.21135 0.99831 0.97582 0.93207 0.89452 0.89374 0.89265 0.92101 0.91588 0.94277 0.92987 0.93145 0.85957 0.86200 0.86364 0.86148 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.43 36.01 0.38 -1.88 16 2 C 0.45 10.48 7.96 36.01 0.29 10.77 16 3 O -0.51 -14.04 16.36 -18.75 -0.31 -14.34 16 4 O -0.37 -9.17 9.85 -42.03 -0.41 -9.58 16 5 C 0.21 5.73 2.29 -27.89 -0.06 5.66 16 6 H 0.08 2.41 6.49 -51.93 -0.34 2.07 16 7 C -0.54 -15.32 8.59 -34.44 -0.30 -15.61 16 8 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 9 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 10 N -0.87 -25.45 12.84 55.43 0.71 -24.74 16 11 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 C 0.08 1.89 5.59 37.16 0.21 2.09 16 16 O -0.38 -8.46 10.30 -38.81 -0.40 -8.86 16 17 C 0.10 1.68 6.06 36.01 0.22 1.90 16 18 C -0.08 -1.22 5.51 -104.63 -0.58 -1.80 16 19 C -0.10 -1.41 9.70 -39.58 -0.38 -1.79 16 20 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 21 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 22 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 23 C -0.10 -1.45 9.70 -39.59 -0.38 -1.83 16 24 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.09 1.23 8.12 -51.93 -0.42 0.81 16 26 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 31 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 321.40 15.07 4.84 4.84 Total: -1.00 -33.38 321.40 -7.44 -40.82 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.95 Total: 1.73 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -1.91 Total: -6.17 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.71 Total: -24.74 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.12 Total: -32.78 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.38 -7.44 -40.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034826272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.028 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds