Wall clock time and date at job start Mon Mar 30 2020 06:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20827 * 119.99452 * 2 1 4 4 O 1.34232 * 120.00373 * 179.97438 * 2 1 3 5 5 C 1.45200 * 117.00060 * 174.84453 * 4 2 1 6 6 H 1.09001 * 109.46737 * 34.90532 * 5 4 2 7 7 C 1.50698 * 109.47121 * 274.89929 * 5 4 2 8 8 H 1.08000 * 120.00211 * 324.96146 * 7 5 4 9 9 C 1.37884 * 119.99526 * 144.95930 * 7 5 4 10 10 N 1.31509 * 120.00398 * 5.12860 * 9 7 5 11 11 Si 1.86805 * 119.99650 * 185.12737 * 9 7 5 12 12 H 1.48496 * 109.46900 * 60.00302 * 11 9 7 13 13 H 1.48500 * 109.46728 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.46964 * 300.00169 * 11 9 7 15 15 C 1.52998 * 109.46771 * 154.90110 * 5 4 2 16 16 O 1.42901 * 109.46951 * 294.99674 * 15 5 4 17 17 C 1.42904 * 113.99700 * 180.02562 * 16 15 5 18 18 C 1.50702 * 109.46931 * 180.02562 * 17 16 15 19 19 C 1.38235 * 119.99579 * 90.00324 * 18 17 16 20 20 C 1.38245 * 119.99805 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99698 * 0.07188 * 20 19 18 22 22 C 1.38235 * 120.00053 * 359.90425 * 21 20 19 23 23 C 1.38226 * 120.00265 * 269.97742 * 18 17 16 24 24 H 1.08996 * 109.47048 * 239.99690 * 1 2 3 25 25 H 1.08999 * 109.47667 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47079 * 120.00286 * 1 2 3 27 27 H 0.97000 * 120.00370 * 179.97438 * 10 9 7 28 28 H 1.09004 * 109.46837 * 175.00275 * 15 5 4 29 29 H 1.08994 * 109.47133 * 55.00439 * 15 5 4 30 30 H 1.08995 * 109.46983 * 60.00471 * 17 16 15 31 31 H 1.09002 * 109.47105 * 300.00403 * 17 16 15 32 32 H 1.07994 * 120.00445 * 359.69406 * 19 18 17 33 33 H 1.07994 * 120.00209 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.99600 * 179.97438 * 21 20 19 35 35 H 1.08006 * 119.99696 * 180.02562 * 22 21 20 36 36 H 1.08004 * 119.99746 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1110 1.0465 0.0000 4 8 2.1782 -1.1624 0.0005 5 6 3.6237 -1.0890 -0.1158 6 1 3.9856 -0.2031 0.4061 7 6 4.0071 -1.0068 -1.5708 8 1 3.4301 -1.5395 -2.3123 9 6 5.0945 -0.2514 -1.9556 10 7 5.8568 0.3149 -1.0458 11 14 5.4851 -0.0326 -3.7692 12 1 4.3367 0.6203 -4.4475 13 1 6.6942 0.8169 -3.9161 14 1 5.7343 -1.3604 -4.3855 15 6 4.2495 -2.3388 0.5067 16 8 3.9835 -2.3558 1.9106 17 6 4.5281 -3.4880 2.5916 18 6 4.1885 -3.4037 4.0574 19 6 3.0204 -3.9721 4.5300 20 6 2.7091 -3.8952 5.8748 21 6 3.5652 -3.2486 6.7465 22 6 4.7335 -2.6807 6.2739 23 6 5.0452 -2.7585 4.9294 24 1 -0.3633 -0.5139 0.8899 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 6.6220 0.8460 -1.3164 28 1 5.3268 -2.3266 0.3411 29 1 3.8209 -3.2282 0.0448 30 1 5.6111 -3.4992 2.4693 31 1 4.1056 -4.4015 2.1730 32 1 2.3488 -4.4722 3.8481 33 1 1.7963 -4.3389 6.2440 34 1 3.3218 -3.1882 7.7969 35 1 5.4026 -2.1759 6.9551 36 1 5.9579 -2.3144 4.5601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034826272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:02 Heat of formation + Delta-G solvation = -138.089654 kcal Electronic energy + Delta-G solvation = -19453.494789 eV Core-core repulsion = 16287.707388 eV Total energy + Delta-G solvation = -3165.787401 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.98842 -40.24675 -38.62748 -37.12007 -35.10609 -33.04460 -31.79382 -31.59250 -30.23611 -27.45801 -26.21224 -23.47274 -23.44909 -22.21488 -21.55605 -19.04886 -18.42826 -17.79291 -17.40797 -16.94562 -16.78277 -16.69178 -16.41499 -16.02249 -15.47202 -14.89131 -14.47633 -14.28858 -14.06118 -13.70474 -13.55874 -13.38087 -13.20935 -12.98649 -12.86394 -12.73468 -12.49376 -12.24851 -11.92012 -11.85232 -11.60854 -11.27316 -10.95530 -10.77314 -10.49806 -9.82472 -9.75223 -8.35704 -6.56903 0.34783 0.49689 1.34892 1.39887 1.47408 1.56435 2.22159 2.37826 2.63413 2.98018 3.29539 3.90801 3.93549 4.04971 4.15163 4.28532 4.32321 4.36930 4.44912 4.53562 4.57678 4.65049 4.67952 4.76356 4.92171 5.06798 5.12886 5.15603 5.19084 5.51972 5.54803 5.59242 5.70025 5.83717 6.02210 6.10361 6.34780 6.61659 7.08080 7.25546 8.72467 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.005041 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.687804 B = 5552.592845 C = 6376.420225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.439 3.561 3 O -0.567 6.567 4 O -0.372 6.372 5 C 0.212 3.788 6 H 0.027 0.973 7 C -0.564 4.564 8 H 0.068 0.932 9 C 0.024 3.976 10 N -0.910 5.910 11 Si 0.974 3.026 12 H -0.272 1.272 13 H -0.277 1.277 14 H -0.254 1.254 15 C 0.096 3.904 16 O -0.407 6.407 17 C 0.095 3.905 18 C -0.107 4.107 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.122 4.122 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.271 0.729 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 -9.348 10.912 15.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.285 3.715 3 O -0.459 6.459 4 O -0.289 6.289 5 C 0.159 3.841 6 H 0.045 0.955 7 C -0.601 4.601 8 H 0.086 0.914 9 C -0.178 4.178 10 N -0.546 5.546 11 Si 0.796 3.204 12 H -0.198 1.198 13 H -0.202 1.202 14 H -0.178 1.178 15 C 0.020 3.980 16 O -0.327 6.327 17 C 0.019 3.981 18 C -0.107 4.107 19 C -0.131 4.131 20 C -0.144 4.144 21 C -0.136 4.136 22 C -0.148 4.148 23 C -0.140 4.140 24 H 0.136 0.864 25 H 0.124 0.876 26 H 0.135 0.865 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.162 0.838 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.298 -8.830 11.056 15.488 hybrid contribution 0.983 0.402 -1.116 1.541 sum -5.315 -8.428 9.940 14.074 Atomic orbital electron populations 1.21695 0.83344 1.06505 1.07151 1.24840 0.94004 0.81507 0.71116 1.90614 1.72700 1.34849 1.47782 1.86331 1.25313 1.35054 1.82153 1.20344 0.73162 0.94812 0.95777 0.95459 1.21419 1.14440 1.32227 0.91987 0.91423 1.25982 0.95294 0.93207 1.03343 1.70068 1.16341 1.32360 1.35876 0.85386 0.77710 0.79173 0.78116 1.19761 1.20221 1.17802 1.22627 0.98349 0.98028 0.78999 1.87984 1.77800 1.45639 1.21311 1.21443 0.97798 0.89338 0.89531 1.19804 0.96761 1.00307 0.93822 1.21306 0.95463 0.99438 0.96906 1.21500 1.00650 0.99532 0.92671 1.21577 0.93925 0.96952 1.01190 1.21450 0.98351 1.00068 0.94883 1.21282 0.99927 0.98290 0.94502 0.86371 0.87647 0.86505 0.91974 0.93154 0.92553 0.92813 0.91343 0.85155 0.83129 0.82967 0.83844 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 10.43 71.24 0.74 -2.95 16 2 C 0.44 20.43 7.96 71.24 0.57 21.00 16 3 O -0.57 -32.08 16.36 21.96 0.36 -31.72 16 4 O -0.37 -18.73 9.85 -48.79 -0.48 -19.21 16 5 C 0.21 11.94 2.29 29.85 0.07 12.01 16 6 H 0.03 1.80 6.49 -2.39 -0.02 1.79 16 7 C -0.56 -32.51 8.59 25.60 0.22 -32.29 16 8 H 0.07 3.76 7.82 -2.91 -0.02 3.74 16 9 C 0.02 1.38 5.45 84.66 0.46 1.84 16 10 N -0.91 -55.24 12.84 21.45 0.28 -54.96 16 11 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.25 -10.66 7.11 99.48 0.71 -9.95 16 15 C 0.10 4.67 5.59 71.98 0.40 5.07 16 16 O -0.41 -18.52 10.30 -145.56 -1.50 -20.02 16 17 C 0.09 3.31 6.06 71.24 0.43 3.74 16 18 C -0.11 -3.36 5.51 -19.87 -0.11 -3.47 16 19 C -0.11 -3.02 9.70 22.27 0.22 -2.81 16 20 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 21 C -0.12 -2.41 10.05 22.27 0.22 -2.18 16 22 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 23 C -0.12 -3.59 9.70 22.27 0.22 -3.37 16 24 H 0.12 2.67 8.14 -2.39 -0.02 2.66 16 25 H 0.10 2.65 8.12 -2.39 -0.02 2.63 16 26 H 0.12 2.73 8.14 -2.38 -0.02 2.71 16 27 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.05 2.55 8.14 -2.38 -0.02 2.53 16 29 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.05 1.81 8.09 -2.39 -0.02 1.79 16 31 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 32 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -76.70 321.40 5.63 -71.07 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.06 Total: 17.42 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 3.89 Total: -8.71 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.28 Total: -54.96 kcal Atomic # 8 Polarization: -69.34 SS G_CDS: -1.62 Total: -70.96 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -76.70 5.63 -71.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034826272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.017 kcal (2) G-P(sol) polarization free energy of solvation -76.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds