Wall clock time and date at job start Mon Mar 30 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.32341 * 126.07594 * 2 1 4 4 C 1.33232 * 109.97232 * 180.28037 * 3 2 1 5 5 S 1.76389 * 141.35482 * 179.72505 * 4 3 2 6 6 C 1.75768 * 90.70858 * 179.97438 * 5 4 3 7 7 C 1.31085 * 109.79247 * 359.97438 * 6 5 4 8 8 C 1.50698 * 121.85038 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47074 * 2.93934 * 8 7 6 10 10 C 1.53001 * 109.46963 * 122.94123 * 8 7 6 11 11 C 1.53000 * 109.47012 * 242.94224 * 8 7 6 12 12 N 1.35170 * 109.53358 * 359.71145 * 4 3 2 13 13 C 1.39437 * 126.06982 * 179.80047 * 2 1 3 14 14 C 1.39896 * 126.92395 * 359.97438 * 13 2 1 15 15 H 1.08002 * 119.99852 * 123.45766 * 14 13 2 16 16 C 1.39821 * 119.99894 * 303.45144 * 14 13 2 17 17 N 1.31083 * 120.00203 * 184.03309 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 4.03442 * 16 14 13 19 19 H 1.48504 * 109.47158 * 95.91392 * 18 16 14 20 20 H 1.48497 * 109.47192 * 335.91535 * 18 16 14 21 21 H 1.48501 * 109.47253 * 215.91342 * 18 16 14 22 22 H 1.09003 * 109.46551 * 274.65596 * 1 2 3 23 23 H 1.09002 * 109.46806 * 34.64881 * 1 2 3 24 24 H 1.08990 * 109.47051 * 154.65343 * 1 2 3 25 25 H 1.08002 * 125.10307 * 180.02562 * 6 5 4 26 26 H 1.08999 * 109.47007 * 60.00167 * 9 8 7 27 27 H 1.09001 * 109.47239 * 179.97438 * 9 8 7 28 28 H 1.08994 * 109.47347 * 300.00203 * 9 8 7 29 29 H 1.09000 * 109.46915 * 65.97556 * 10 8 7 30 30 H 1.08997 * 109.47033 * 185.98154 * 10 8 7 31 31 H 1.09001 * 109.47328 * 305.97614 * 10 8 7 32 32 H 1.08998 * 109.47637 * 70.53007 * 11 8 7 33 33 H 1.09005 * 109.46689 * 190.52961 * 11 8 7 34 34 H 1.09000 * 109.47197 * 310.52289 * 11 8 7 35 35 H 0.96991 * 120.00070 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2864 1.0696 0.0000 4 6 3.5664 0.7001 -0.0061 5 16 5.1955 1.3763 -0.0159 6 6 5.8894 -0.2386 -0.0160 7 6 4.9314 -1.1334 -0.0086 8 6 5.2239 -2.6117 -0.0074 9 6 6.7365 -2.8322 0.0582 10 6 4.5605 -3.2618 1.2084 11 6 4.6717 -3.2419 -1.2876 12 7 3.6473 -0.6492 -0.0039 13 6 2.3281 -1.1271 0.0039 14 6 1.9189 -2.4648 0.0091 15 1 2.2538 -3.1349 -0.7689 16 6 1.0765 -2.9343 1.0215 17 7 0.7568 -4.2046 1.0716 18 14 0.4066 -1.7514 2.3026 19 1 -0.9491 -1.2996 1.8984 20 1 1.3081 -0.5763 2.4107 21 1 0.3282 -2.4377 3.6172 22 1 -0.3632 0.0834 1.0243 23 1 -0.3633 0.8454 -0.5843 24 1 -0.3633 -0.9287 -0.4399 25 1 6.9464 -0.4605 -0.0205 26 1 7.1299 -2.3832 0.9702 27 1 6.9481 -3.9015 0.0596 28 1 7.2091 -2.3690 -0.8079 29 1 3.4769 -3.1976 1.1087 30 1 4.8585 -4.3085 1.2686 31 1 4.8734 -2.7424 2.1142 32 1 5.2701 -2.9185 -2.1392 33 1 4.7140 -4.3280 -1.2053 34 1 3.6376 -2.9283 -1.4301 35 1 0.1727 -4.5303 1.7741 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036255934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:46 Heat of formation + Delta-G solvation = 82.510623 kcal Electronic energy + Delta-G solvation = -18904.645893 eV Core-core repulsion = 16223.470059 eV Total energy + Delta-G solvation = -2681.175833 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38309 -37.65967 -34.52412 -33.26023 -30.43473 -30.26641 -27.18815 -26.72432 -26.59373 -24.43072 -22.82543 -20.33697 -19.41885 -18.72897 -16.99091 -16.53151 -15.33587 -14.99951 -14.57089 -14.29771 -13.84165 -13.64694 -13.30912 -13.12827 -12.45084 -12.08437 -11.98295 -11.80344 -11.76264 -11.68565 -11.31913 -10.98102 -10.89537 -10.63315 -10.59326 -10.23474 -10.17938 -9.97528 -9.89439 -9.36835 -9.10063 -8.81276 -7.57469 -6.90245 -6.53705 -4.60814 1.81220 1.90157 2.48233 3.00350 3.15445 3.30407 3.36315 3.63664 3.91372 4.00628 4.73813 4.95353 5.27216 5.33684 5.59691 5.69704 5.85927 5.89629 5.98065 6.01920 6.15933 6.26823 6.30117 6.40417 6.43340 6.50304 6.56456 6.63900 6.78319 6.85093 7.05583 7.28097 7.32480 7.65969 7.88180 8.25253 8.40529 8.69131 9.03656 10.17149 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.011593 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.607294 B = 2414.766873 C = 3443.731501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.061 4.061 3 N -0.440 5.440 4 C 0.064 3.936 5 S 0.094 5.906 6 C -0.268 4.268 7 C 0.139 3.861 8 C -0.001 4.001 9 C -0.140 4.140 10 C -0.171 4.171 11 C -0.151 4.151 12 N -0.415 5.415 13 C 0.181 3.819 14 C -0.464 4.464 15 H 0.106 0.894 16 C 0.105 3.895 17 N -0.827 5.827 18 Si 0.883 3.117 19 H -0.257 1.257 20 H -0.248 1.248 21 H -0.291 1.291 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.178 0.822 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.364 1.186 -0.586 7.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.194 4.194 3 N -0.163 5.163 4 C -0.297 4.297 5 S 0.341 5.659 6 C -0.405 4.405 7 C 0.027 3.973 8 C -0.005 4.005 9 C -0.197 4.197 10 C -0.227 4.227 11 C -0.208 4.208 12 N -0.098 5.098 13 C 0.070 3.930 14 C -0.499 4.499 15 H 0.124 0.876 16 C -0.113 4.113 17 N -0.455 5.455 18 Si 0.710 3.290 19 H -0.182 1.182 20 H -0.172 1.172 21 H -0.219 1.219 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.196 0.804 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.139 0.861 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.509 3.092 -0.508 8.137 hybrid contribution -0.395 -1.657 0.662 1.827 sum 7.114 1.435 0.153 7.259 Atomic orbital electron populations 1.20140 0.88512 1.02335 1.00911 1.20907 0.95025 0.87429 1.16007 1.69527 0.96753 1.31490 1.18484 1.25135 0.98535 0.84308 1.21709 1.83796 0.90390 1.05263 1.86421 1.24466 1.02592 0.94483 1.18951 1.19072 0.82436 0.96597 0.99156 1.19291 0.95584 0.87371 0.98207 1.21968 0.94242 1.01913 1.01607 1.22423 1.07189 0.98566 0.94547 1.22142 1.03443 1.00462 0.94713 1.44570 1.05231 1.07143 1.52827 1.19139 0.77883 0.95253 1.00679 1.18046 1.27884 0.92413 1.11588 0.87631 1.25639 0.93407 0.95221 0.96983 1.69648 1.29848 1.14017 1.32012 0.86880 0.81424 0.81483 0.79253 1.18207 1.17153 1.21868 0.92947 0.92207 0.90545 0.80433 0.92411 0.91942 0.92491 0.86148 0.92968 0.94192 0.93700 0.92128 0.89484 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.33 8.22 36.01 0.30 -1.03 16 2 C -0.06 -1.52 5.48 -81.92 -0.45 -1.97 16 3 N -0.44 -11.15 11.24 -8.68 -0.10 -11.24 16 4 C 0.06 1.51 8.92 -87.93 -0.78 0.72 16 5 S 0.09 1.74 23.37 -107.50 -2.51 -0.77 16 6 C -0.27 -4.60 9.89 28.99 0.29 -4.32 16 7 C 0.14 2.74 5.30 -81.92 -0.43 2.30 16 8 C 0.00 -0.03 0.77 -155.66 -0.12 -0.14 16 9 C -0.14 -1.87 7.19 37.16 0.27 -1.60 16 10 C -0.17 -3.28 8.24 37.16 0.31 -2.97 16 11 C -0.15 -2.66 8.23 37.16 0.31 -2.35 16 12 N -0.42 -9.68 3.08 -56.81 -0.18 -9.86 16 13 C 0.18 4.48 5.14 -82.91 -0.43 4.05 16 14 C -0.46 -11.44 5.52 -38.37 -0.21 -11.66 16 15 H 0.11 2.70 5.51 -52.49 -0.29 2.41 16 16 C 0.10 2.57 4.72 -17.28 -0.08 2.49 16 17 N -0.83 -20.67 13.94 55.55 0.77 -19.89 16 18 Si 0.88 20.25 23.13 -169.99 -3.93 16.32 16 19 H -0.26 -5.51 6.08 56.52 0.34 -5.17 16 20 H -0.25 -6.22 6.22 56.52 0.35 -5.86 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.05 1.12 4.67 -51.93 -0.24 0.87 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.08 1.61 7.48 -51.93 -0.39 1.22 16 25 H 0.18 2.40 6.49 -52.49 -0.34 2.06 16 26 H 0.06 0.72 7.78 -51.93 -0.40 0.32 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.68 7.53 -51.93 -0.39 0.29 16 29 H 0.12 2.74 3.64 -51.93 -0.19 2.55 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 34 H 0.09 1.81 4.11 -51.93 -0.21 1.60 16 35 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 276.08 15.07 4.16 4.16 Total: -1.00 -27.63 276.08 -7.06 -34.69 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.23 Total: 3.08 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.04 Total: -16.48 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.50 Total: -41.00 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -3.93 Total: 16.32 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.51 Total: -0.77 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.63 -7.06 -34.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036255934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.198 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds