Wall clock time and date at job start Mon Mar 30 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.32341 * 126.07594 * 2 1 4 4 C 1.33232 * 109.97232 * 180.28037 * 3 2 1 5 5 S 1.76389 * 141.35482 * 179.72505 * 4 3 2 6 6 C 1.75768 * 90.70858 * 179.97438 * 5 4 3 7 7 C 1.31085 * 109.79247 * 359.97438 * 6 5 4 8 8 C 1.50698 * 121.85038 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47074 * 2.93934 * 8 7 6 10 10 C 1.53001 * 109.46963 * 122.94123 * 8 7 6 11 11 C 1.53000 * 109.47012 * 242.94224 * 8 7 6 12 12 N 1.35170 * 109.53358 * 359.71145 * 4 3 2 13 13 C 1.39437 * 126.06982 * 179.80047 * 2 1 3 14 14 C 1.39896 * 126.92395 * 359.97438 * 13 2 1 15 15 H 1.08002 * 119.99852 * 123.45766 * 14 13 2 16 16 C 1.39821 * 119.99894 * 303.45144 * 14 13 2 17 17 N 1.31083 * 120.00203 * 184.03309 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 4.03442 * 16 14 13 19 19 H 1.48504 * 109.47158 * 95.91392 * 18 16 14 20 20 H 1.48497 * 109.47192 * 335.91535 * 18 16 14 21 21 H 1.48501 * 109.47253 * 215.91342 * 18 16 14 22 22 H 1.09003 * 109.46551 * 274.65596 * 1 2 3 23 23 H 1.09002 * 109.46806 * 34.64881 * 1 2 3 24 24 H 1.08990 * 109.47051 * 154.65343 * 1 2 3 25 25 H 1.08002 * 125.10307 * 180.02562 * 6 5 4 26 26 H 1.08999 * 109.47007 * 60.00167 * 9 8 7 27 27 H 1.09001 * 109.47239 * 179.97438 * 9 8 7 28 28 H 1.08994 * 109.47347 * 300.00203 * 9 8 7 29 29 H 1.09000 * 109.46915 * 65.97556 * 10 8 7 30 30 H 1.08997 * 109.47033 * 185.98154 * 10 8 7 31 31 H 1.09001 * 109.47328 * 305.97614 * 10 8 7 32 32 H 1.08998 * 109.47637 * 70.53007 * 11 8 7 33 33 H 1.09005 * 109.46689 * 190.52961 * 11 8 7 34 34 H 1.09000 * 109.47197 * 310.52289 * 11 8 7 35 35 H 0.96991 * 120.00070 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2864 1.0696 0.0000 4 6 3.5664 0.7001 -0.0061 5 16 5.1955 1.3763 -0.0159 6 6 5.8894 -0.2386 -0.0160 7 6 4.9314 -1.1334 -0.0086 8 6 5.2239 -2.6117 -0.0074 9 6 6.7365 -2.8322 0.0582 10 6 4.5605 -3.2618 1.2084 11 6 4.6717 -3.2419 -1.2876 12 7 3.6473 -0.6492 -0.0039 13 6 2.3281 -1.1271 0.0039 14 6 1.9189 -2.4648 0.0091 15 1 2.2538 -3.1349 -0.7689 16 6 1.0765 -2.9343 1.0215 17 7 0.7568 -4.2046 1.0716 18 14 0.4066 -1.7514 2.3026 19 1 -0.9491 -1.2996 1.8984 20 1 1.3081 -0.5763 2.4107 21 1 0.3282 -2.4377 3.6172 22 1 -0.3632 0.0834 1.0243 23 1 -0.3633 0.8454 -0.5843 24 1 -0.3633 -0.9287 -0.4399 25 1 6.9464 -0.4605 -0.0205 26 1 7.1299 -2.3832 0.9702 27 1 6.9481 -3.9015 0.0596 28 1 7.2091 -2.3690 -0.8079 29 1 3.4769 -3.1976 1.1087 30 1 4.8585 -4.3085 1.2686 31 1 4.8734 -2.7424 2.1142 32 1 5.2701 -2.9185 -2.1392 33 1 4.7140 -4.3280 -1.2053 34 1 3.6376 -2.9283 -1.4301 35 1 0.1727 -4.5303 1.7741 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036255934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:46 Heat of formation + Delta-G solvation = 66.541988 kcal Electronic energy + Delta-G solvation = -18905.338345 eV Core-core repulsion = 16223.470059 eV Total energy + Delta-G solvation = -2681.868285 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.09127 -39.14454 -36.20611 -34.99019 -32.21448 -31.90296 -28.81104 -28.13901 -27.94178 -26.16946 -24.41836 -21.96093 -21.15170 -20.44521 -18.55074 -18.26022 -17.05403 -16.62502 -16.24924 -15.82652 -15.45309 -15.12779 -14.86998 -14.66031 -14.12447 -13.78835 -13.62075 -13.49026 -13.18726 -12.94427 -12.87531 -12.52613 -12.44953 -12.28600 -12.15147 -11.74613 -11.69195 -11.64645 -11.50600 -11.09443 -10.83819 -10.63682 -9.26136 -8.74378 -8.25472 -6.46135 0.22603 0.27054 0.95472 1.19047 1.29198 1.44313 1.63318 2.00115 2.06892 2.15617 2.91040 3.55035 3.92355 3.98206 4.08016 4.29089 4.40651 4.52110 4.66799 4.67874 4.77072 4.77793 4.90160 4.92815 5.00170 5.06867 5.09815 5.15371 5.26728 5.27754 5.42810 5.55302 5.75412 5.89690 6.15437 6.35456 6.61865 6.83889 7.22313 8.34593 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.011593 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.607294 B = 2414.766873 C = 3443.731501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.077 4.077 3 N -0.475 5.475 4 C 0.040 3.960 5 S 0.146 5.854 6 C -0.236 4.236 7 C 0.095 3.905 8 C 0.002 3.998 9 C -0.134 4.134 10 C -0.170 4.170 11 C -0.146 4.146 12 N -0.420 5.420 13 C 0.157 3.843 14 C -0.459 4.459 15 H 0.088 0.912 16 C 0.085 3.915 17 N -0.856 5.856 18 Si 0.919 3.081 19 H -0.235 1.235 20 H -0.281 1.281 21 H -0.289 1.289 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.226 0.774 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.843 1.786 -0.658 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.209 4.209 3 N -0.199 5.199 4 C -0.320 4.320 5 S 0.393 5.607 6 C -0.373 4.373 7 C -0.015 4.015 8 C -0.001 4.001 9 C -0.191 4.191 10 C -0.227 4.227 11 C -0.203 4.203 12 N -0.101 5.101 13 C 0.045 3.955 14 C -0.495 4.495 15 H 0.106 0.894 16 C -0.129 4.129 17 N -0.486 5.486 18 Si 0.746 3.254 19 H -0.159 1.159 20 H -0.206 1.206 21 H -0.216 1.216 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.242 0.758 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.991 3.681 -0.586 10.664 hybrid contribution -0.971 -1.706 0.650 2.068 sum 9.020 1.975 0.064 9.234 Atomic orbital electron populations 1.20183 0.87165 1.03147 1.01300 1.21424 0.96326 0.87617 1.15495 1.69521 0.97834 1.31914 1.20652 1.26197 1.00150 0.85439 1.20236 1.83655 0.86541 1.05381 1.85086 1.25124 1.04216 0.93165 1.14774 1.19609 0.81433 0.98420 1.02003 1.19357 0.98352 0.85703 0.96682 1.21951 0.90557 1.03435 1.03177 1.22344 1.05075 0.99688 0.95606 1.22058 1.01462 1.00915 0.95888 1.44651 1.06151 1.07156 1.52142 1.19162 0.78832 0.95187 1.02312 1.17867 1.28143 0.92216 1.11288 0.89443 1.25920 0.93626 0.95707 0.97654 1.69663 1.31235 1.14615 1.33078 0.86374 0.81477 0.79190 0.78400 1.15886 1.20621 1.21614 0.92791 0.90360 0.90547 0.75788 0.91149 0.90514 0.90398 0.89744 0.91665 0.94466 0.91896 0.91456 0.93275 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.64 8.22 71.24 0.59 -2.05 16 2 C -0.08 -3.87 5.48 42.77 0.23 -3.63 16 3 N -0.48 -24.24 11.24 -181.37 -2.04 -26.28 16 4 C 0.04 1.89 8.92 179.41 1.60 3.49 16 5 S 0.15 4.98 23.37 -56.49 -1.32 3.66 16 6 C -0.24 -7.16 9.89 67.70 0.67 -6.49 16 7 C 0.10 3.56 5.30 41.59 0.22 3.78 16 8 C 0.00 0.07 0.77 -52.93 -0.04 0.03 16 9 C -0.13 -2.98 7.19 71.98 0.52 -2.46 16 10 C -0.17 -6.45 8.24 71.98 0.59 -5.86 16 11 C -0.15 -5.02 8.23 71.98 0.59 -4.43 16 12 N -0.42 -19.46 3.08 -333.64 -1.03 -20.49 16 13 C 0.16 7.95 5.14 38.47 0.20 8.14 16 14 C -0.46 -23.46 5.52 23.05 0.13 -23.33 16 15 H 0.09 4.72 5.51 -2.91 -0.02 4.70 16 16 C 0.09 4.29 4.72 85.19 0.40 4.69 16 17 N -0.86 -43.86 13.94 21.82 0.30 -43.56 16 18 Si 0.92 42.41 23.13 68.60 1.59 44.00 16 19 H -0.23 -9.86 6.08 99.48 0.60 -9.25 16 20 H -0.28 -14.44 6.22 99.48 0.62 -13.82 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 22 H 0.05 2.30 4.67 -2.39 -0.01 2.29 16 23 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 24 H 0.08 3.27 7.48 -2.39 -0.02 3.25 16 25 H 0.23 4.58 6.49 -2.91 -0.02 4.56 16 26 H 0.07 1.41 7.78 -2.39 -0.02 1.39 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.43 7.53 -2.39 -0.02 1.41 16 29 H 0.08 3.92 3.64 -2.39 -0.01 3.91 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 33 H 0.07 2.15 8.11 -2.38 -0.02 2.13 16 34 H 0.05 2.09 4.11 -2.39 -0.01 2.08 16 35 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 Total: -1.00 -61.72 276.08 4.13 -57.59 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.93 Total: 13.20 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 5.70 Total: -28.12 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -2.76 Total: -90.33 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.59 Total: 44.00 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -1.32 Total: 3.66 kcal Total: -61.72 4.13 -57.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036255934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.131 kcal (2) G-P(sol) polarization free energy of solvation -61.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds