Wall clock time and date at job start Mon Mar 30 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31089 * 125.09684 * 2 1 4 4 N 1.37238 * 116.29595 * 179.78756 * 3 2 1 5 5 C 1.40309 * 139.42895 * 180.14294 * 4 3 2 6 6 C 1.39893 * 126.92258 * 0.36167 * 5 4 3 7 7 H 1.07998 * 119.99813 * 141.63104 * 6 5 4 8 8 C 1.39819 * 120.00240 * 321.63950 * 6 5 4 9 9 N 1.31076 * 120.00077 * 157.89440 * 8 6 5 10 10 Si 1.86803 * 119.99617 * 337.89542 * 8 6 5 11 11 H 1.48504 * 109.46790 * 95.38426 * 10 8 6 12 12 H 1.48499 * 109.46866 * 215.37937 * 10 8 6 13 13 H 1.48500 * 109.47397 * 335.38305 * 10 8 6 14 14 C 1.39444 * 106.15863 * 180.34347 * 5 4 3 15 15 C 1.50699 * 126.07886 * 179.97438 * 14 5 4 16 16 C 1.52997 * 109.47261 * 179.97438 * 15 14 5 17 17 C 1.53000 * 109.46927 * 299.98192 * 15 14 5 18 18 C 1.53007 * 109.46672 * 59.97567 * 15 14 5 19 19 N 1.32349 * 107.84782 * 0.02562 * 14 5 4 20 20 C 1.33228 * 109.97901 * 359.97438 * 19 14 5 21 21 S 1.75759 * 125.10804 * 180.31024 * 2 1 3 22 22 H 1.08998 * 109.46453 * 179.71848 * 1 2 3 23 23 H 1.08994 * 109.47523 * 59.72024 * 1 2 3 24 24 H 1.09000 * 109.47209 * 299.71544 * 1 2 3 25 25 H 1.07995 * 121.85813 * 359.97438 * 3 2 1 26 26 H 0.96997 * 120.00439 * 180.02562 * 9 8 6 27 27 H 1.09000 * 109.46989 * 60.00300 * 16 15 14 28 28 H 1.09000 * 109.47075 * 180.02562 * 16 15 14 29 29 H 1.08995 * 109.47140 * 300.00120 * 16 15 14 30 30 H 1.08993 * 109.47837 * 59.99612 * 17 15 14 31 31 H 1.09000 * 109.46808 * 179.97438 * 17 15 14 32 32 H 1.09007 * 109.46690 * 299.99311 * 17 15 14 33 33 H 1.08998 * 109.46791 * 60.00373 * 18 15 14 34 34 H 1.09000 * 109.46977 * 180.02562 * 18 15 14 35 35 H 1.09000 * 109.46855 * 300.00388 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2607 1.0725 0.0000 4 7 3.6170 0.8626 0.0046 5 6 4.8098 1.6013 0.0089 6 6 4.9354 2.9946 0.0168 7 1 5.7142 3.4632 0.6002 8 6 4.0527 3.7804 -0.7302 9 7 3.8673 5.0389 -0.4140 10 14 3.1375 3.0367 -2.1790 11 1 1.7924 2.5883 -1.7374 12 1 2.9928 4.0562 -3.2491 13 1 3.8997 1.8746 -2.7022 14 6 5.8449 0.6670 0.0041 15 6 7.3198 0.9765 0.0056 16 6 8.1152 -0.3305 -0.0005 17 6 7.6708 1.7931 -1.2398 18 6 7.6707 1.7813 1.2587 19 7 5.3019 -0.5399 -0.0032 20 6 3.9733 -0.4414 -0.0028 21 16 2.5179 -1.4378 -0.0078 22 1 -0.3632 -1.0277 -0.0050 23 1 -0.3634 0.5181 -0.8874 24 1 -0.3633 0.5094 0.8925 25 1 1.8380 2.0663 -0.0004 26 1 3.2546 5.5840 -0.9320 27 1 7.8652 -0.9038 -0.8932 28 1 9.1819 -0.1066 0.0011 29 1 7.8651 -0.9121 0.8868 30 1 7.1042 2.7241 -1.2355 31 1 8.7375 2.0173 -1.2384 32 1 7.4208 1.2197 -2.1325 33 1 7.4206 1.1995 2.1459 34 1 8.7373 2.0055 1.2596 35 1 7.1039 2.7123 1.2630 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036256941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:37 Heat of formation + Delta-G solvation = 69.552201 kcal Electronic energy + Delta-G solvation = -18447.157582 eV Core-core repulsion = 15765.419829 eV Total energy + Delta-G solvation = -2681.737753 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13656 -36.85047 -34.77471 -33.75710 -31.24116 -29.77401 -26.44874 -26.38077 -26.02811 -24.91550 -22.50244 -20.79585 -19.33239 -18.08012 -17.49866 -16.61286 -15.22051 -14.65241 -14.52394 -14.19323 -13.96370 -13.40841 -13.15500 -12.97799 -12.80394 -12.65356 -12.10521 -11.86001 -11.57299 -11.41946 -11.36534 -10.95777 -10.76403 -10.56961 -10.40292 -10.26709 -10.19839 -9.94235 -9.83152 -9.60051 -9.03584 -8.76896 -7.53077 -7.11050 -6.81694 -4.49016 1.82183 1.98253 2.53814 2.75936 2.94616 3.09159 3.35365 3.67908 3.79335 3.98953 4.80794 5.31582 5.45092 5.51516 5.64720 5.70688 5.80356 5.88616 6.02783 6.16793 6.23087 6.29949 6.37482 6.51576 6.56478 6.63367 6.72903 6.77929 6.86227 6.93118 7.17716 7.27534 7.42611 7.58249 7.95186 8.19149 8.43537 8.56825 9.15826 9.91378 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.011212 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.568093 B = 2496.654187 C = 3718.843714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.231 4.231 3 C 0.079 3.921 4 N -0.430 5.430 5 C 0.192 3.808 6 C -0.440 4.440 7 H 0.117 0.883 8 C 0.091 3.909 9 N -0.801 5.801 10 Si 0.865 3.135 11 H -0.256 1.256 12 H -0.276 1.276 13 H -0.251 1.251 14 C -0.070 4.070 15 C 0.046 3.954 16 C -0.123 4.123 17 C -0.138 4.138 18 C -0.139 4.139 19 N -0.421 5.421 20 C 0.036 3.964 21 S 0.094 5.906 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.165 0.835 26 H 0.285 0.715 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.781 -4.342 -0.558 5.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.351 4.351 3 C -0.051 4.051 4 N -0.115 5.115 5 C 0.083 3.917 6 C -0.474 4.474 7 H 0.134 0.866 8 C -0.129 4.129 9 N -0.427 5.427 10 Si 0.690 3.310 11 H -0.182 1.182 12 H -0.202 1.202 13 H -0.174 1.174 14 C -0.204 4.204 15 C 0.045 3.955 16 C -0.180 4.180 17 C -0.196 4.196 18 C -0.197 4.197 19 N -0.142 5.142 20 C -0.322 4.322 21 S 0.339 5.661 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.182 0.818 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.661 -6.174 -0.585 6.749 hybrid contribution -0.798 2.093 -0.766 2.367 sum -3.458 -4.082 -1.351 5.518 Atomic orbital electron populations 1.20074 0.86986 1.02537 1.02450 1.23311 1.00025 0.94921 1.16834 1.20288 0.82274 1.00714 1.01800 1.44142 1.04075 1.08288 1.55038 1.19043 0.80020 0.92735 0.99934 1.18430 1.15426 0.86517 1.27051 0.86568 1.25937 0.94580 0.94759 0.97617 1.69807 1.29538 1.07849 1.35457 0.87090 0.81019 0.80667 0.82238 1.18155 1.20172 1.17418 1.20461 0.93732 0.86742 1.19418 1.18337 0.87734 0.94433 0.95014 1.21636 0.97417 0.97031 1.01943 1.21846 0.99596 1.01345 0.96804 1.21935 0.99809 1.01028 0.96929 1.69411 1.01387 1.26684 1.16688 1.24800 0.96343 0.85677 1.25415 1.83666 0.90441 1.04792 1.87168 0.91327 0.91248 0.90967 0.81758 0.90432 0.93003 0.94013 0.93007 0.90779 0.93838 0.93749 0.93592 0.93654 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.36 36.01 0.37 -0.44 16 2 C -0.23 -4.23 6.43 -36.05 -0.23 -4.46 16 3 C 0.08 1.68 8.01 -16.87 -0.14 1.54 16 4 N -0.43 -10.44 2.55 -61.02 -0.16 -10.59 16 5 C 0.19 4.82 5.41 -82.91 -0.45 4.38 16 6 C -0.44 -11.11 7.66 -38.37 -0.29 -11.41 16 7 H 0.12 3.01 5.75 -52.49 -0.30 2.71 16 8 C 0.09 2.24 5.46 -17.28 -0.09 2.14 16 9 N -0.80 -19.98 13.94 55.55 0.77 -19.21 16 10 Si 0.87 19.48 24.52 -169.99 -4.17 15.32 16 11 H -0.26 -5.33 5.39 56.52 0.30 -5.03 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 H -0.25 -6.23 7.11 56.52 0.40 -5.83 16 14 C -0.07 -1.69 5.58 -81.92 -0.46 -2.15 16 15 C 0.05 0.94 0.80 -155.66 -0.12 0.82 16 16 C -0.12 -2.25 7.97 37.16 0.30 -1.95 16 17 C -0.14 -2.67 8.34 37.16 0.31 -2.36 16 18 C -0.14 -2.63 8.34 37.16 0.31 -2.32 16 19 N -0.42 -10.50 10.55 -8.68 -0.09 -10.59 16 20 C 0.04 0.86 8.92 -87.93 -0.78 0.07 16 21 S 0.09 1.81 23.36 -107.50 -2.51 -0.70 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.17 3.39 6.05 -52.49 -0.32 3.07 16 26 H 0.29 6.50 8.30 -40.82 -0.34 6.16 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.55 6.55 -51.93 -0.34 1.21 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.42 5.41 -51.93 -0.28 1.13 16 LS Contribution 291.29 15.07 4.39 4.39 Total: -1.00 -27.95 291.29 -7.74 -35.70 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.70 Total: 1.81 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -1.28 Total: -16.13 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.53 Total: -40.39 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.17 Total: 15.32 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.51 Total: -0.70 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.95 -7.74 -35.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036256941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.249 kcal (2) G-P(sol) polarization free energy of solvation -27.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds