Wall clock time and date at job start Mon Mar 30 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31089 * 125.09684 * 2 1 4 4 N 1.37238 * 116.29595 * 179.78756 * 3 2 1 5 5 C 1.40309 * 139.42895 * 180.14294 * 4 3 2 6 6 C 1.39893 * 126.92258 * 0.36167 * 5 4 3 7 7 H 1.07998 * 119.99813 * 141.63104 * 6 5 4 8 8 C 1.39819 * 120.00240 * 321.63950 * 6 5 4 9 9 N 1.31076 * 120.00077 * 157.89440 * 8 6 5 10 10 Si 1.86803 * 119.99617 * 337.89542 * 8 6 5 11 11 H 1.48504 * 109.46790 * 95.38426 * 10 8 6 12 12 H 1.48499 * 109.46866 * 215.37937 * 10 8 6 13 13 H 1.48500 * 109.47397 * 335.38305 * 10 8 6 14 14 C 1.39444 * 106.15863 * 180.34347 * 5 4 3 15 15 C 1.50699 * 126.07886 * 179.97438 * 14 5 4 16 16 C 1.52997 * 109.47261 * 179.97438 * 15 14 5 17 17 C 1.53000 * 109.46927 * 299.98192 * 15 14 5 18 18 C 1.53007 * 109.46672 * 59.97567 * 15 14 5 19 19 N 1.32349 * 107.84782 * 0.02562 * 14 5 4 20 20 C 1.33228 * 109.97901 * 359.97438 * 19 14 5 21 21 S 1.75759 * 125.10804 * 180.31024 * 2 1 3 22 22 H 1.08998 * 109.46453 * 179.71848 * 1 2 3 23 23 H 1.08994 * 109.47523 * 59.72024 * 1 2 3 24 24 H 1.09000 * 109.47209 * 299.71544 * 1 2 3 25 25 H 1.07995 * 121.85813 * 359.97438 * 3 2 1 26 26 H 0.96997 * 120.00439 * 180.02562 * 9 8 6 27 27 H 1.09000 * 109.46989 * 60.00300 * 16 15 14 28 28 H 1.09000 * 109.47075 * 180.02562 * 16 15 14 29 29 H 1.08995 * 109.47140 * 300.00120 * 16 15 14 30 30 H 1.08993 * 109.47837 * 59.99612 * 17 15 14 31 31 H 1.09000 * 109.46808 * 179.97438 * 17 15 14 32 32 H 1.09007 * 109.46690 * 299.99311 * 17 15 14 33 33 H 1.08998 * 109.46791 * 60.00373 * 18 15 14 34 34 H 1.09000 * 109.46977 * 180.02562 * 18 15 14 35 35 H 1.09000 * 109.46855 * 300.00388 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2607 1.0725 0.0000 4 7 3.6170 0.8626 0.0046 5 6 4.8098 1.6013 0.0089 6 6 4.9354 2.9946 0.0168 7 1 5.7142 3.4632 0.6002 8 6 4.0527 3.7804 -0.7302 9 7 3.8673 5.0389 -0.4140 10 14 3.1375 3.0367 -2.1790 11 1 1.7924 2.5883 -1.7374 12 1 2.9928 4.0562 -3.2491 13 1 3.8997 1.8746 -2.7022 14 6 5.8449 0.6670 0.0041 15 6 7.3198 0.9765 0.0056 16 6 8.1152 -0.3305 -0.0005 17 6 7.6708 1.7931 -1.2398 18 6 7.6707 1.7813 1.2587 19 7 5.3019 -0.5399 -0.0032 20 6 3.9733 -0.4414 -0.0028 21 16 2.5179 -1.4378 -0.0078 22 1 -0.3632 -1.0277 -0.0050 23 1 -0.3634 0.5181 -0.8874 24 1 -0.3633 0.5094 0.8925 25 1 1.8380 2.0663 -0.0004 26 1 3.2546 5.5840 -0.9320 27 1 7.8652 -0.9038 -0.8932 28 1 9.1819 -0.1066 0.0011 29 1 7.8651 -0.9121 0.8868 30 1 7.1042 2.7241 -1.2355 31 1 8.7375 2.0173 -1.2384 32 1 7.4208 1.2197 -2.1325 33 1 7.4206 1.1995 2.1459 34 1 8.7373 2.0055 1.2596 35 1 7.1039 2.7123 1.2630 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036256941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:36 Heat of formation + Delta-G solvation = 54.549377 kcal Electronic energy + Delta-G solvation = -18447.808153 eV Core-core repulsion = 15765.419829 eV Total energy + Delta-G solvation = -2682.388324 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.90701 -38.47270 -36.35499 -35.59255 -32.81613 -31.49269 -27.97058 -27.92179 -27.50715 -26.71944 -24.17668 -22.47088 -21.03606 -19.84127 -19.17787 -18.31921 -17.01346 -16.42000 -16.23445 -15.76068 -15.60011 -14.87545 -14.77896 -14.49383 -14.24533 -14.08830 -13.77122 -13.33963 -13.07724 -13.05966 -12.79712 -12.65170 -12.47250 -12.21894 -12.02232 -11.85772 -11.79602 -11.57918 -11.48719 -11.34136 -10.73959 -10.60035 -9.24327 -8.95405 -8.55046 -6.35462 0.17798 0.31961 0.89307 0.99481 1.12223 1.26844 1.56566 1.93440 2.04017 2.16805 2.95412 3.80795 3.89767 4.12518 4.24187 4.31112 4.32791 4.56963 4.70411 4.73621 4.84819 4.91456 4.96596 5.02524 5.03382 5.09697 5.11802 5.16708 5.30684 5.36119 5.61074 5.65382 5.70713 5.80214 6.19566 6.28925 6.62004 6.71711 7.32878 8.12004 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.011212 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.568093 B = 2496.654187 C = 3718.843714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.195 4.195 3 C 0.024 3.976 4 N -0.436 5.436 5 C 0.162 3.838 6 C -0.455 4.455 7 H 0.097 0.903 8 C 0.068 3.932 9 N -0.832 5.832 10 Si 0.906 3.094 11 H -0.227 1.227 12 H -0.265 1.265 13 H -0.289 1.289 14 C -0.073 4.073 15 C 0.035 3.965 16 C -0.112 4.112 17 C -0.130 4.130 18 C -0.131 4.131 19 N -0.451 5.451 20 C 0.012 3.988 21 S 0.143 5.857 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.168 0.832 26 H 0.293 0.707 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 -5.660 -0.777 7.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.315 4.315 3 C -0.104 4.104 4 N -0.121 5.121 5 C 0.051 3.949 6 C -0.490 4.490 7 H 0.115 0.885 8 C -0.148 4.148 9 N -0.460 5.460 10 Si 0.730 3.270 11 H -0.151 1.151 12 H -0.190 1.190 13 H -0.215 1.215 14 C -0.206 4.206 15 C 0.034 3.966 16 C -0.170 4.170 17 C -0.188 4.188 18 C -0.188 4.188 19 N -0.173 5.173 20 C -0.346 4.346 21 S 0.389 5.611 22 H 0.112 0.888 23 H 0.106 0.894 24 H 0.112 0.888 25 H 0.185 0.815 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.036 -7.486 -0.795 8.542 hybrid contribution -0.451 2.282 -0.642 2.413 sum -4.486 -5.204 -1.437 7.020 Atomic orbital electron populations 1.20387 0.82807 1.04874 1.04364 1.24142 1.02396 0.93472 1.11500 1.20561 0.81443 1.02018 1.06343 1.44266 1.05072 1.08209 1.54561 1.19178 0.80920 0.92963 1.01849 1.18290 1.15793 0.86938 1.27976 0.88523 1.26283 0.95041 0.94916 0.98593 1.69812 1.30961 1.08534 1.36687 0.86502 0.81215 0.78804 0.80500 1.15125 1.19008 1.21519 1.21209 0.95481 0.86489 1.17407 1.18596 0.86148 0.95851 0.96008 1.21540 0.99048 0.95483 1.00898 1.21764 1.01377 0.99777 0.95897 1.21836 1.01527 0.99547 0.95906 1.69452 1.02159 1.27069 1.18600 1.25832 0.97575 0.87082 1.24110 1.83488 0.87738 1.04059 1.85813 0.88779 0.89414 0.88770 0.81478 0.89605 0.94139 0.90636 0.93908 0.93116 0.90385 0.94759 0.94258 0.90328 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.36 71.24 0.74 -0.67 16 2 C -0.20 -6.56 6.43 25.56 0.16 -6.40 16 3 C 0.02 0.99 8.01 83.72 0.67 1.66 16 4 N -0.44 -21.29 2.55 -346.97 -0.88 -22.17 16 5 C 0.16 8.37 5.41 38.47 0.21 8.58 16 6 C -0.46 -24.00 7.66 23.05 0.18 -23.83 16 7 H 0.10 5.33 5.75 -2.91 -0.02 5.31 16 8 C 0.07 3.47 5.46 85.19 0.46 3.93 16 9 N -0.83 -42.52 13.94 21.82 0.30 -42.22 16 10 Si 0.91 40.53 24.52 68.60 1.68 42.21 16 11 H -0.23 -8.98 5.39 99.48 0.54 -8.44 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 14 C -0.07 -3.58 5.58 42.77 0.24 -3.34 16 15 C 0.04 1.44 0.80 -52.93 -0.04 1.40 16 16 C -0.11 -3.99 7.97 71.98 0.57 -3.42 16 17 C -0.13 -5.05 8.34 71.98 0.60 -4.45 16 18 C -0.13 -4.92 8.34 71.98 0.60 -4.32 16 19 N -0.45 -22.75 10.55 -181.37 -1.91 -24.66 16 20 C 0.01 0.57 8.92 179.41 1.60 2.17 16 21 S 0.14 5.19 23.36 -56.49 -1.32 3.87 16 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.17 6.71 6.05 -2.91 -0.02 6.69 16 26 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 2.19 6.55 -2.39 -0.02 2.17 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.05 2.04 5.41 -2.39 -0.01 2.03 16 Total: -1.00 -62.71 291.29 4.78 -57.93 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.92 Total: 13.73 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 5.99 Total: -28.68 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -2.49 Total: -89.05 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 1.68 Total: 42.21 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.32 Total: 3.87 kcal Total: -62.71 4.78 -57.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036256941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.479 kcal (2) G-P(sol) polarization free energy of solvation -62.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds