Wall clock time and date at job start Mon Mar 30 2020 06:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99762 * 2 1 4 4 O 1.20827 * 120.00070 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00097 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47083 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46703 * 179.97438 * 6 5 3 8 8 O 1.42899 * 109.46788 * 179.97438 * 7 6 5 9 9 C 1.35674 * 117.00079 * 179.97438 * 8 7 6 10 10 C 1.39316 * 119.81672 * 359.73089 * 9 8 7 11 11 C 1.36435 * 120.18497 * 179.75651 * 10 9 8 12 12 C 1.40830 * 119.81030 * 0.51197 * 11 10 9 13 13 C 1.41221 * 120.18003 * 179.71625 * 12 11 10 14 14 H 1.07998 * 120.00156 * 204.56544 * 13 12 11 15 15 C 1.39893 * 119.99538 * 24.56773 * 13 12 11 16 16 N 1.30880 * 120.00328 * 17.93134 * 15 13 12 17 17 Si 1.86801 * 119.99652 * 197.93077 * 15 13 12 18 18 H 1.48496 * 109.47198 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.47041 * 119.99669 * 17 15 13 20 20 H 1.48495 * 109.47295 * 239.99662 * 17 15 13 21 21 C 1.40837 * 119.64583 * 359.74363 * 12 11 10 22 22 C 1.36441 * 119.80575 * 359.97438 * 21 12 11 23 23 H 1.08996 * 109.47531 * 60.00128 * 1 2 3 24 24 H 1.09002 * 109.46794 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46966 * 299.99584 * 1 2 3 26 26 H 1.09000 * 109.46571 * 59.99951 * 5 3 2 27 27 H 1.08999 * 109.47188 * 300.00140 * 5 3 2 28 28 H 1.09004 * 109.46618 * 60.00441 * 6 5 3 29 29 H 1.08999 * 109.47369 * 300.00208 * 6 5 3 30 30 H 1.08995 * 109.46886 * 60.00737 * 7 6 5 31 31 H 1.08999 * 109.47550 * 300.00308 * 7 6 5 32 32 H 1.07998 * 119.90235 * 0.02562 * 10 9 8 33 33 H 1.08005 * 120.09317 * 180.25226 * 11 10 9 34 34 H 0.96998 * 119.99635 * 180.02562 * 16 15 13 35 35 H 1.07992 * 120.09861 * 179.97438 * 21 12 11 36 36 H 1.07997 * 119.90394 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 6 5.5279 2.8223 -0.0011 8 8 5.9330 4.1927 -0.0021 9 6 7.2669 4.4407 -0.0017 10 6 8.1689 3.3789 0.0054 11 6 9.5118 3.6197 0.0009 12 6 9.9854 4.9460 -0.0001 13 6 11.3738 5.2041 0.0013 14 1 11.7487 6.1396 0.3895 15 6 12.2634 4.2480 -0.5002 16 7 11.8251 3.2900 -1.2768 17 14 14.0769 4.3388 -0.0615 18 1 14.3139 5.5066 0.8246 19 1 14.4788 3.0944 0.6423 20 1 14.8795 4.4871 -1.3020 21 6 9.0668 6.0136 -0.0019 22 6 7.7271 5.7556 -0.0032 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9556 0.7810 -0.8908 27 1 3.9564 0.7807 0.8891 28 1 3.6106 3.2364 0.8890 29 1 3.6099 3.2361 -0.8910 30 1 5.9176 2.3280 -0.8909 31 1 5.9177 2.3285 0.8891 32 1 7.8040 2.3625 0.0102 33 1 10.2098 2.7954 0.0023 34 1 12.4420 2.6269 -1.6242 35 1 9.4219 7.0335 -0.0022 36 1 7.0213 6.5730 -0.0041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037286695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:08 Heat of formation + Delta-G solvation = -118.302145 kcal Electronic energy + Delta-G solvation = -18601.505306 eV Core-core repulsion = 15436.575956 eV Total energy + Delta-G solvation = -3164.929351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67053 -38.81045 -36.92495 -36.43092 -34.02482 -33.16253 -29.65679 -29.38649 -28.53997 -26.72854 -24.68815 -22.72852 -21.16134 -20.58953 -20.19364 -17.79752 -17.35802 -17.09708 -16.95648 -16.46475 -15.68138 -15.28282 -14.46643 -14.17190 -13.95125 -13.67933 -13.07254 -13.04994 -12.62450 -12.36614 -12.24484 -12.07399 -11.86039 -11.67853 -11.19030 -11.10243 -11.06178 -10.93756 -10.83571 -10.69170 -10.50724 -9.87474 -9.76994 -9.36391 -9.00592 -7.64647 -7.00794 -6.72595 -4.24588 1.99316 2.43781 2.76427 2.97262 3.08809 3.14158 3.21116 3.95439 4.05221 4.48486 4.61909 4.80487 4.81253 4.90001 5.05298 5.15899 5.30404 5.39238 5.50350 5.65294 5.67622 6.08766 6.10322 6.12906 6.19872 6.30329 6.74468 6.90318 7.07465 7.28735 7.42279 7.51860 7.56796 7.91589 8.01095 8.16297 8.45707 8.66149 8.90824 9.00092 10.22158 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.046203 B = 0.002969 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.872239 B = 9427.749582 C = 9939.019960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.462 3.538 4 O -0.505 6.505 5 C -0.110 4.110 6 C -0.108 4.108 7 C 0.069 3.931 8 O -0.328 6.328 9 C -0.009 4.009 10 C -0.174 4.174 11 C -0.135 4.135 12 C 0.086 3.914 13 C -0.462 4.462 14 H 0.077 0.923 15 C 0.074 3.926 16 N -0.800 5.800 17 Si 0.906 3.094 18 H -0.261 1.261 19 H -0.273 1.273 20 H -0.275 1.275 21 C -0.196 4.196 22 C -0.113 4.113 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.278 0.722 35 H 0.100 0.900 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.673 -8.188 1.787 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.392 6.392 5 C -0.148 4.148 6 C -0.146 4.146 7 C -0.007 4.007 8 O -0.245 6.245 9 C -0.052 4.052 10 C -0.193 4.193 11 C -0.154 4.154 12 C 0.084 3.916 13 C -0.492 4.492 14 H 0.095 0.905 15 C -0.142 4.142 16 N -0.426 5.426 17 Si 0.731 3.269 18 H -0.185 1.185 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.216 4.216 22 C -0.132 4.132 23 H 0.081 0.919 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.968 -7.947 1.645 16.154 hybrid contribution 0.743 -0.303 0.037 0.803 sum -13.225 -8.249 1.682 15.678 Atomic orbital electron populations 1.23259 0.76386 1.03629 1.02601 1.86513 1.23453 1.33664 1.84265 1.23825 0.92271 0.81224 0.72193 1.90692 1.67269 1.36316 1.44900 1.21278 0.87230 0.99895 1.06394 1.21299 0.94772 0.93496 1.05006 1.22345 0.93384 0.84096 1.00857 1.85783 1.22466 1.24856 1.91348 1.18567 0.80380 0.94028 1.12218 1.20616 0.94748 0.95888 1.08013 1.20945 0.93063 0.97783 1.03616 1.17611 0.93211 0.90979 0.89783 1.19501 0.90975 1.02492 1.36281 0.90457 1.25879 1.01391 0.94315 0.92639 1.69849 1.37387 1.12474 1.22934 0.86294 0.82026 0.79344 0.79229 1.18452 1.19809 1.20091 1.20601 0.91750 0.97968 1.11264 1.19624 0.95324 0.92670 1.05595 0.91886 0.88127 0.91886 0.87183 0.87208 0.90184 0.90154 0.92848 0.92913 0.88705 0.86096 0.91071 0.88205 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.60 10.57 -39.25 -0.41 -4.02 16 3 C 0.46 5.23 7.96 36.01 0.29 5.52 16 4 O -0.50 -7.25 15.73 -18.75 -0.29 -7.55 16 5 C -0.11 -1.06 5.81 -27.88 -0.16 -1.22 16 6 C -0.11 -1.38 4.87 -26.73 -0.13 -1.51 16 7 C 0.07 1.08 4.73 37.16 0.18 1.25 16 8 O -0.33 -6.75 10.12 -18.72 -0.19 -6.94 16 9 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 10 C -0.17 -4.06 8.96 -39.83 -0.36 -4.42 16 11 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 12 C 0.09 2.31 5.57 -106.80 -0.60 1.72 16 13 C -0.46 -12.28 9.04 -37.83 -0.34 -12.62 16 14 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 15 C 0.07 1.86 5.13 -17.34 -0.09 1.78 16 16 N -0.80 -20.65 10.96 55.54 0.61 -20.05 16 17 Si 0.91 18.65 29.60 -169.99 -5.03 13.62 16 18 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 21 C -0.20 -4.87 9.74 -39.25 -0.38 -5.25 16 22 C -0.11 -2.67 9.92 -39.83 -0.40 -3.06 16 23 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 24 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 26 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 29 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 31 H 0.05 0.77 7.63 -51.93 -0.40 0.38 16 32 H 0.09 1.94 6.27 -52.49 -0.33 1.61 16 33 H 0.12 3.21 6.16 -52.48 -0.32 2.88 16 34 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 35 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -30.49 312.89 -6.93 -37.42 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.80 Total: 3.59 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -1.52 Total: -20.80 kcal Atomic # 7 Polarization: -20.65 SS G_CDS: 0.61 Total: -20.05 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.90 Total: -18.50 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.49 -6.93 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037286695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.882 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds