Wall clock time and date at job start Mon Mar 30 2020 06:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99762 * 2 1 4 4 O 1.20827 * 120.00070 * 0.02562 * 3 2 1 5 5 C 1.50707 * 120.00097 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47083 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46703 * 179.97438 * 6 5 3 8 8 O 1.42899 * 109.46788 * 179.97438 * 7 6 5 9 9 C 1.35674 * 117.00079 * 179.97438 * 8 7 6 10 10 C 1.39316 * 119.81672 * 359.73089 * 9 8 7 11 11 C 1.36435 * 120.18497 * 179.75651 * 10 9 8 12 12 C 1.40830 * 119.81030 * 0.51197 * 11 10 9 13 13 C 1.41221 * 120.18003 * 179.71625 * 12 11 10 14 14 H 1.07998 * 120.00156 * 204.56544 * 13 12 11 15 15 C 1.39893 * 119.99538 * 24.56773 * 13 12 11 16 16 N 1.30880 * 120.00328 * 17.93134 * 15 13 12 17 17 Si 1.86801 * 119.99652 * 197.93077 * 15 13 12 18 18 H 1.48496 * 109.47198 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.47041 * 119.99669 * 17 15 13 20 20 H 1.48495 * 109.47295 * 239.99662 * 17 15 13 21 21 C 1.40837 * 119.64583 * 359.74363 * 12 11 10 22 22 C 1.36441 * 119.80575 * 359.97438 * 21 12 11 23 23 H 1.08996 * 109.47531 * 60.00128 * 1 2 3 24 24 H 1.09002 * 109.46794 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46966 * 299.99584 * 1 2 3 26 26 H 1.09000 * 109.46571 * 59.99951 * 5 3 2 27 27 H 1.08999 * 109.47188 * 300.00140 * 5 3 2 28 28 H 1.09004 * 109.46618 * 60.00441 * 6 5 3 29 29 H 1.08999 * 109.47369 * 300.00208 * 6 5 3 30 30 H 1.08995 * 109.46886 * 60.00737 * 7 6 5 31 31 H 1.08999 * 109.47550 * 300.00308 * 7 6 5 32 32 H 1.07998 * 119.90235 * 0.02562 * 10 9 8 33 33 H 1.08005 * 120.09317 * 180.25226 * 11 10 9 34 34 H 0.96998 * 119.99635 * 180.02562 * 16 15 13 35 35 H 1.07992 * 120.09861 * 179.97438 * 21 12 11 36 36 H 1.07997 * 119.90394 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 6 5.5279 2.8223 -0.0011 8 8 5.9330 4.1927 -0.0021 9 6 7.2669 4.4407 -0.0017 10 6 8.1689 3.3789 0.0054 11 6 9.5118 3.6197 0.0009 12 6 9.9854 4.9460 -0.0001 13 6 11.3738 5.2041 0.0013 14 1 11.7487 6.1396 0.3895 15 6 12.2634 4.2480 -0.5002 16 7 11.8251 3.2900 -1.2768 17 14 14.0769 4.3388 -0.0615 18 1 14.3139 5.5066 0.8246 19 1 14.4788 3.0944 0.6423 20 1 14.8795 4.4871 -1.3020 21 6 9.0668 6.0136 -0.0019 22 6 7.7271 5.7556 -0.0032 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9556 0.7810 -0.8908 27 1 3.9564 0.7807 0.8891 28 1 3.6106 3.2364 0.8890 29 1 3.6099 3.2361 -0.8910 30 1 5.9176 2.3280 -0.8909 31 1 5.9177 2.3285 0.8891 32 1 7.8040 2.3625 0.0102 33 1 10.2098 2.7954 0.0023 34 1 12.4420 2.6269 -1.6242 35 1 9.4219 7.0335 -0.0022 36 1 7.0213 6.5730 -0.0041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037286695.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:08 Heat of formation + Delta-G solvation = -134.889136 kcal Electronic energy + Delta-G solvation = -18602.224572 eV Core-core repulsion = 15436.575956 eV Total energy + Delta-G solvation = -3165.648617 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.53120 -40.49737 -38.30317 -37.63818 -35.44695 -34.68829 -31.52431 -31.09774 -29.55057 -27.71792 -26.47904 -23.99967 -22.84624 -22.00535 -21.46119 -19.25442 -18.78185 -18.53118 -17.81056 -17.49381 -17.01160 -16.86441 -16.07307 -15.72556 -15.16401 -14.80991 -14.62878 -14.17457 -14.06083 -13.85126 -13.69178 -13.38766 -13.14865 -12.85704 -12.76040 -12.73916 -12.39388 -12.24665 -12.04452 -11.81518 -11.62963 -11.60192 -11.41768 -11.18981 -10.84063 -9.54789 -8.89615 -8.58843 -6.21004 0.95075 1.06148 1.13947 1.41193 1.51863 1.56256 1.66793 2.24359 2.68526 2.73810 3.64842 3.71831 3.91540 4.07585 4.21946 4.30751 4.31501 4.32888 4.43132 4.45096 4.46673 4.64470 4.71863 4.89159 5.01684 5.02020 5.16912 5.18210 5.36890 5.39011 5.55651 5.68224 5.99489 6.08120 6.25818 6.58285 6.68822 6.81732 6.96829 7.12457 8.38146 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.046203 B = 0.002969 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.872239 B = 9427.749582 C = 9939.019960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.464 3.536 4 O -0.543 6.543 5 C -0.104 4.104 6 C -0.098 4.098 7 C 0.061 3.939 8 O -0.340 6.340 9 C -0.001 4.001 10 C -0.174 4.174 11 C -0.155 4.155 12 C 0.053 3.947 13 C -0.499 4.499 14 H 0.074 0.926 15 C 0.034 3.966 16 N -0.830 5.830 17 Si 0.982 3.018 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.267 1.267 21 C -0.207 4.207 22 C -0.124 4.124 23 H 0.060 0.940 24 H 0.132 0.868 25 H 0.060 0.940 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.287 0.713 35 H 0.108 0.892 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.957 -9.607 1.995 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.309 3.691 4 O -0.433 6.433 5 C -0.141 4.141 6 C -0.136 4.136 7 C -0.014 4.014 8 O -0.256 6.256 9 C -0.045 4.045 10 C -0.193 4.193 11 C -0.175 4.175 12 C 0.051 3.949 13 C -0.529 4.529 14 H 0.093 0.907 15 C -0.180 4.180 16 N -0.457 5.457 17 Si 0.803 3.197 18 H -0.183 1.183 19 H -0.189 1.189 20 H -0.192 1.192 21 C -0.226 4.226 22 C -0.143 4.143 23 H 0.079 0.921 24 H 0.150 0.850 25 H 0.079 0.921 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.281 -9.388 1.851 17.190 hybrid contribution 0.619 0.087 -0.044 0.626 sum -13.662 -9.301 1.807 16.626 Atomic orbital electron populations 1.23542 0.74918 1.05706 1.02426 1.86503 1.24932 1.32749 1.83731 1.24106 0.92846 0.81046 0.71078 1.90684 1.68193 1.37551 1.46881 1.21272 0.86220 0.97826 1.08754 1.21176 0.92640 0.95784 1.03997 1.22693 0.95088 0.81739 1.01924 1.85782 1.20669 1.28192 1.90974 1.18688 0.81631 0.93849 1.10297 1.20855 0.93826 0.97587 1.06987 1.20941 0.94060 0.97222 1.05263 1.17978 0.94016 0.91950 0.90958 1.19731 0.91701 1.03406 1.38030 0.90747 1.26713 1.05873 0.93550 0.91868 1.69889 1.39293 1.13143 1.23400 0.85170 0.76026 0.79480 0.79071 1.18350 1.18861 1.19219 1.20791 0.92331 0.98140 1.11365 1.19911 0.95269 0.93889 1.05230 0.92136 0.84958 0.92081 0.84855 0.84686 0.91163 0.91346 0.91901 0.91510 0.85778 0.87333 0.90227 0.87374 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.44 10.57 -51.40 -0.54 -6.98 16 3 C 0.46 9.72 7.96 71.24 0.57 10.28 16 4 O -0.54 -15.24 15.73 21.96 0.35 -14.89 16 5 C -0.10 -1.70 5.81 29.85 0.17 -1.52 16 6 C -0.10 -2.33 4.87 30.60 0.15 -2.18 16 7 C 0.06 1.75 4.73 71.98 0.34 2.09 16 8 O -0.34 -13.44 10.12 -89.91 -0.91 -14.35 16 9 C 0.00 -0.04 6.71 22.79 0.15 0.11 16 10 C -0.17 -7.99 8.96 22.11 0.20 -7.79 16 11 C -0.16 -8.15 8.64 22.48 0.19 -7.96 16 12 C 0.05 2.90 5.57 -21.28 -0.12 2.78 16 13 C -0.50 -27.10 9.04 23.40 0.21 -26.89 16 14 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 15 C 0.03 1.71 5.13 85.24 0.44 2.14 16 16 N -0.83 -43.28 10.96 21.82 0.24 -43.04 16 17 Si 0.98 38.22 29.60 68.60 2.03 40.25 16 18 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 21 C -0.21 -10.40 9.74 22.49 0.22 -10.18 16 22 C -0.12 -5.81 9.92 22.11 0.22 -5.59 16 23 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 24 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 26 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.07 1.81 8.10 -2.38 -0.02 1.79 16 29 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 30 H 0.06 1.71 7.66 -2.39 -0.02 1.69 16 31 H 0.07 1.76 7.63 -2.39 -0.02 1.74 16 32 H 0.12 4.82 6.27 -2.91 -0.02 4.80 16 33 H 0.11 5.88 6.16 -2.91 -0.02 5.86 16 34 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 35 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 36 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -66.36 312.89 6.18 -60.18 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 1.07 Total: 21.98 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 3.94 Total: -43.15 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.24 Total: -43.04 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -1.11 Total: -36.22 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -66.36 6.18 -60.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037286695.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.710 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds