Wall clock time and date at job start Mon Mar 30 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38092 * 119.95798 * 2 1 4 4 C 1.38526 * 120.40431 * 180.02562 * 3 2 1 5 5 C 1.37800 * 120.30564 * 0.23300 * 4 3 2 6 6 C 1.39731 * 119.90317 * 359.46935 * 5 4 3 7 7 C 1.47403 * 120.19732 * 180.27436 * 6 5 4 8 8 O 1.21509 * 119.99949 * 180.27086 * 7 6 5 9 9 O 1.34753 * 120.00233 * 0.27911 * 7 6 5 10 10 C 1.38665 * 119.95368 * 179.97438 * 2 1 3 11 11 O 1.35644 * 120.15604 * 359.97438 * 10 2 1 12 12 C 1.42896 * 117.00412 * 89.99340 * 11 10 2 13 13 C 1.53001 * 109.47231 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46994 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47222 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99684 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00036 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99800 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00051 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47010 * 90.00288 * 19 17 15 21 21 H 1.48508 * 109.47282 * 209.99929 * 19 17 15 22 22 H 1.48501 * 109.47422 * 329.99798 * 19 17 15 23 23 H 1.09005 * 109.46674 * 89.99856 * 1 2 3 24 24 H 1.08992 * 109.47122 * 210.00187 * 1 2 3 25 25 H 1.08999 * 109.46777 * 330.01014 * 1 2 3 26 26 H 1.08001 * 119.80070 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.84391 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.05100 * 179.72400 * 5 4 3 29 29 H 0.96696 * 116.99877 * 180.02562 * 9 7 6 30 30 H 1.08993 * 109.47299 * 300.00636 * 12 11 10 31 31 H 1.09003 * 109.46620 * 60.00198 * 12 11 10 32 32 H 1.08993 * 109.47478 * 300.00501 * 13 12 11 33 33 H 1.09000 * 109.46675 * 60.00448 * 13 12 11 34 34 H 1.08998 * 109.47757 * 300.00721 * 14 13 12 35 35 H 1.09003 * 109.46797 * 60.00210 * 14 13 12 36 36 H 0.96999 * 119.99928 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1964 0.0000 4 6 3.5818 1.2072 -0.0005 5 6 4.2864 0.0230 -0.0059 6 6 3.6017 -1.1950 0.0004 7 6 4.3489 -2.4656 0.0008 8 8 3.7498 -3.5228 0.0013 9 8 5.6964 -2.4549 0.0008 10 6 2.1994 -1.2014 0.0005 11 8 1.5234 -2.3774 0.0016 12 6 1.1994 -2.9407 -1.2711 13 6 0.4431 -4.2553 -1.0694 14 6 0.0968 -4.8587 -2.4320 15 6 -0.6487 -6.1533 -2.2334 16 1 -0.8553 -6.5097 -1.2350 17 6 -1.0671 -6.8825 -3.3261 18 7 -1.7182 -8.0120 -3.1527 19 14 -0.7092 -6.2663 -5.0529 20 1 0.5988 -6.8021 -5.5084 21 1 -1.7799 -6.7251 -5.9741 22 1 -0.6619 -4.7821 -5.0490 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5137 26 1 1.6526 2.1295 -0.0004 27 1 4.1119 2.1482 -0.0009 28 1 5.3663 0.0362 -0.0108 29 1 6.1422 -3.3129 0.0007 30 1 0.5736 -2.2437 -1.8283 31 1 2.1168 -3.1307 -1.8284 32 1 1.0685 -4.9526 -0.5120 33 1 -0.4742 -4.0649 -0.5122 34 1 -0.5285 -4.1617 -2.9899 35 1 1.0144 -5.0492 -2.9888 36 1 -2.0122 -8.5253 -3.9215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037729831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:52 Heat of formation + Delta-G solvation = -117.256372 kcal Electronic energy + Delta-G solvation = -19593.328251 eV Core-core repulsion = 16428.444248 eV Total energy + Delta-G solvation = -3164.884003 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76077 -39.25287 -37.45861 -35.94389 -34.02306 -33.03720 -31.85096 -30.45866 -27.61426 -26.69361 -24.76084 -22.95819 -21.66467 -21.18121 -20.13034 -17.90921 -17.77892 -16.89925 -16.67430 -16.30082 -15.65957 -15.17300 -14.69403 -14.49021 -14.11943 -14.05042 -13.36276 -13.18313 -12.69667 -12.63474 -12.50909 -12.16231 -11.98009 -11.77285 -11.50095 -11.47607 -10.93490 -10.80802 -10.48417 -10.07924 -9.90166 -9.68944 -9.45865 -9.17178 -9.15039 -8.71204 -8.51488 -6.01609 -3.99527 0.48588 1.00944 2.50433 2.93510 3.32122 3.35232 3.39061 3.42284 3.91862 4.46992 4.53999 4.63317 4.81240 5.04935 5.07563 5.31238 5.31838 5.50323 5.56420 5.56998 5.61137 5.69563 5.93800 6.01192 6.06708 6.12505 6.26050 6.40545 6.45590 6.57160 6.66343 6.90323 7.31939 7.44262 7.67634 7.82710 7.91321 8.57427 9.04059 9.60280 11.11915 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.004711 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.726708 B = 5941.638425 C = 6549.363061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.145 4.145 5 C -0.057 4.057 6 C -0.152 4.152 7 C 0.515 3.485 8 O -0.478 6.478 9 O -0.520 6.520 10 C 0.172 3.828 11 O -0.322 6.322 12 C 0.081 3.919 13 C -0.097 4.097 14 C -0.009 4.009 15 C -0.518 4.518 16 H 0.074 0.926 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.139 0.861 29 H 0.413 0.587 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.016 0.984 35 H 0.012 0.988 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.390 21.008 5.808 25.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.163 4.163 5 C -0.075 4.075 6 C -0.153 4.153 7 C 0.358 3.642 8 O -0.364 6.364 9 O -0.333 6.333 10 C 0.126 3.874 11 O -0.239 6.239 12 C 0.008 3.992 13 C -0.135 4.135 14 C -0.046 4.046 15 C -0.555 4.555 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.157 0.843 29 H 0.272 0.728 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.034 0.966 35 H 0.030 0.970 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.850 20.806 5.853 24.649 hybrid contribution 0.630 -0.282 -1.114 1.310 sum 12.481 20.524 4.739 24.484 Atomic orbital electron populations 1.20742 0.89732 1.03648 1.02944 1.20266 0.97483 0.91883 1.02350 1.21223 0.94255 0.97359 0.96268 1.21100 0.94127 0.98178 1.02864 1.21345 1.00537 0.90710 0.94936 1.19513 0.92636 0.91643 1.11544 1.20678 0.80365 0.89520 0.73679 1.91036 1.69356 1.32487 1.43561 1.84518 1.21182 1.41077 1.86520 1.18670 0.88058 0.86786 0.93869 1.85956 1.73514 1.33239 1.31222 1.22996 0.98504 0.95885 0.81852 1.21456 0.98922 0.92496 1.00586 1.19506 0.96266 0.96675 0.92189 1.21092 1.35200 1.04134 0.95123 0.90815 1.25014 0.94658 0.94672 0.99108 1.69917 1.39122 1.14494 1.30707 0.86785 0.78103 0.79733 0.84704 1.20277 1.21322 1.19087 0.90875 0.90151 0.91257 0.85032 0.85034 0.84308 0.72823 0.93616 0.93395 0.91330 0.91912 0.96583 0.96969 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.79 36.01 0.35 -0.88 16 2 C -0.12 -1.43 5.89 -104.52 -0.62 -2.05 16 3 C -0.07 -0.67 9.68 -39.53 -0.38 -1.05 16 4 C -0.14 -1.24 10.02 -39.64 -0.40 -1.64 16 5 C -0.06 -0.58 9.61 -39.18 -0.38 -0.96 16 6 C -0.15 -2.07 5.89 -104.86 -0.62 -2.69 16 7 C 0.52 7.49 8.26 34.46 0.28 7.77 16 8 O -0.48 -8.82 14.81 -26.59 -0.39 -9.22 16 9 O -0.52 -5.43 12.68 -40.64 -0.52 -5.95 16 10 C 0.17 2.56 5.71 -38.67 -0.22 2.34 16 11 O -0.32 -5.78 7.52 -40.51 -0.30 -6.08 16 12 C 0.08 1.50 5.42 37.16 0.20 1.70 16 13 C -0.10 -2.12 5.52 -26.73 -0.15 -2.27 16 14 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 15 C -0.52 -15.29 9.66 -34.44 -0.33 -15.63 16 16 H 0.07 2.34 7.99 -52.49 -0.42 1.92 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 19 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 25 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 27 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 28 H 0.14 1.14 7.61 -52.49 -0.40 0.75 16 29 H 0.41 2.64 9.11 45.56 0.42 3.06 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.91 7.51 -51.93 -0.39 0.52 16 32 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 35 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 311.74 15.07 4.70 4.70 Total: -1.00 -34.99 311.74 -6.95 -41.94 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.07 Total: -1.40 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.46 Total: -13.79 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 0.77 Total: -27.67 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -1.21 Total: -21.25 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.99 -6.95 -41.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037729831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.319 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds