Wall clock time and date at job start Mon Mar 30 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38092 * 119.95798 * 2 1 4 4 C 1.38526 * 120.40431 * 180.02562 * 3 2 1 5 5 C 1.37800 * 120.30564 * 0.23300 * 4 3 2 6 6 C 1.39731 * 119.90317 * 359.46935 * 5 4 3 7 7 C 1.47403 * 120.19732 * 180.27436 * 6 5 4 8 8 O 1.21509 * 119.99949 * 180.27086 * 7 6 5 9 9 O 1.34753 * 120.00233 * 0.27911 * 7 6 5 10 10 C 1.38665 * 119.95368 * 179.97438 * 2 1 3 11 11 O 1.35644 * 120.15604 * 359.97438 * 10 2 1 12 12 C 1.42896 * 117.00412 * 89.99340 * 11 10 2 13 13 C 1.53001 * 109.47231 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46994 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47222 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99684 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00036 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99800 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00051 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47010 * 90.00288 * 19 17 15 21 21 H 1.48508 * 109.47282 * 209.99929 * 19 17 15 22 22 H 1.48501 * 109.47422 * 329.99798 * 19 17 15 23 23 H 1.09005 * 109.46674 * 89.99856 * 1 2 3 24 24 H 1.08992 * 109.47122 * 210.00187 * 1 2 3 25 25 H 1.08999 * 109.46777 * 330.01014 * 1 2 3 26 26 H 1.08001 * 119.80070 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.84391 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.05100 * 179.72400 * 5 4 3 29 29 H 0.96696 * 116.99877 * 180.02562 * 9 7 6 30 30 H 1.08993 * 109.47299 * 300.00636 * 12 11 10 31 31 H 1.09003 * 109.46620 * 60.00198 * 12 11 10 32 32 H 1.08993 * 109.47478 * 300.00501 * 13 12 11 33 33 H 1.09000 * 109.46675 * 60.00448 * 13 12 11 34 34 H 1.08998 * 109.47757 * 300.00721 * 14 13 12 35 35 H 1.09003 * 109.46797 * 60.00210 * 14 13 12 36 36 H 0.96999 * 119.99928 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1964 0.0000 4 6 3.5818 1.2072 -0.0005 5 6 4.2864 0.0230 -0.0059 6 6 3.6017 -1.1950 0.0004 7 6 4.3489 -2.4656 0.0008 8 8 3.7498 -3.5228 0.0013 9 8 5.6964 -2.4549 0.0008 10 6 2.1994 -1.2014 0.0005 11 8 1.5234 -2.3774 0.0016 12 6 1.1994 -2.9407 -1.2711 13 6 0.4431 -4.2553 -1.0694 14 6 0.0968 -4.8587 -2.4320 15 6 -0.6487 -6.1533 -2.2334 16 1 -0.8553 -6.5097 -1.2350 17 6 -1.0671 -6.8825 -3.3261 18 7 -1.7182 -8.0120 -3.1527 19 14 -0.7092 -6.2663 -5.0529 20 1 0.5988 -6.8021 -5.5084 21 1 -1.7799 -6.7251 -5.9741 22 1 -0.6619 -4.7821 -5.0490 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5137 26 1 1.6526 2.1295 -0.0004 27 1 4.1119 2.1482 -0.0009 28 1 5.3663 0.0362 -0.0108 29 1 6.1422 -3.3129 0.0007 30 1 0.5736 -2.2437 -1.8283 31 1 2.1168 -3.1307 -1.8284 32 1 1.0685 -4.9526 -0.5120 33 1 -0.4742 -4.0649 -0.5122 34 1 -0.5285 -4.1617 -2.9899 35 1 1.0144 -5.0492 -2.9888 36 1 -2.0122 -8.5253 -3.9215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037729831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:51 Heat of formation + Delta-G solvation = -140.304582 kcal Electronic energy + Delta-G solvation = -19594.327696 eV Core-core repulsion = 16428.444248 eV Total energy + Delta-G solvation = -3165.883448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.77121 -40.29098 -38.55256 -36.99736 -35.97232 -33.96692 -33.81288 -31.47742 -29.28207 -27.73809 -25.76816 -24.73814 -22.57253 -22.12395 -22.05083 -19.08777 -18.90913 -18.72357 -17.81873 -17.40527 -16.77153 -16.40921 -16.01455 -15.96620 -15.63144 -15.00468 -14.76997 -14.35218 -14.21634 -14.03693 -13.74436 -13.28502 -13.02584 -12.98296 -12.74169 -12.66940 -12.48306 -12.28648 -11.92782 -11.83598 -11.70820 -11.53915 -11.37958 -10.82085 -10.79677 -9.99499 -9.60331 -8.32145 -6.37793 -0.42438 0.16969 1.34038 1.36326 1.48566 1.52913 2.02677 2.34279 2.38071 2.88582 3.02276 3.70422 3.93046 4.02930 4.04229 4.14553 4.25891 4.30750 4.36857 4.43762 4.74089 4.76007 4.77228 4.78576 4.85538 4.95511 5.18479 5.25596 5.36221 5.37845 5.44259 5.48874 5.56730 5.59442 5.74648 6.24229 6.51208 6.69454 6.96420 7.26339 8.85043 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.004711 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.726708 B = 5941.638425 C = 6549.363061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.128 4.128 3 C -0.062 4.062 4 C -0.128 4.128 5 C -0.052 4.052 6 C -0.176 4.176 7 C 0.516 3.484 8 O -0.532 6.532 9 O -0.504 6.504 10 C 0.127 3.873 11 O -0.342 6.342 12 C 0.096 3.904 13 C -0.089 4.089 14 C -0.002 4.002 15 C -0.538 4.538 16 H 0.028 0.972 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.954 3.046 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.243 1.243 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.170 0.830 27 H 0.174 0.826 28 H 0.160 0.840 29 H 0.430 0.570 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.031 0.969 35 H 0.017 0.983 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.913 25.244 4.467 29.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.128 4.128 3 C -0.079 4.079 4 C -0.146 4.146 5 C -0.070 4.070 6 C -0.178 4.178 7 C 0.361 3.639 8 O -0.423 6.423 9 O -0.318 6.318 10 C 0.083 3.917 11 O -0.259 6.259 12 C 0.023 3.977 13 C -0.126 4.126 14 C -0.040 4.040 15 C -0.575 4.575 16 H 0.046 0.954 17 C -0.192 4.192 18 N -0.591 5.591 19 Si 0.777 3.223 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.166 1.166 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.187 0.813 27 H 0.192 0.808 28 H 0.178 0.822 29 H 0.291 0.709 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.414 25.069 4.536 28.792 hybrid contribution 0.240 -1.525 -0.552 1.639 sum 13.654 23.544 3.984 27.507 Atomic orbital electron populations 1.20763 0.89331 1.03794 1.03150 1.20485 0.98036 0.91915 1.02409 1.21682 0.94847 0.97495 0.93915 1.21620 0.94018 0.99079 0.99848 1.21659 1.01658 0.89948 0.93762 1.19685 0.92398 0.92496 1.13184 1.21037 0.81196 0.89399 0.72259 1.91016 1.70523 1.34334 1.46415 1.84472 1.19351 1.42409 1.85602 1.19069 0.88837 0.86470 0.97347 1.85899 1.74293 1.35276 1.30454 1.22572 0.97803 0.94510 0.82833 1.21219 0.98748 0.94040 0.98642 1.19395 0.95869 0.94767 0.93960 1.21402 1.36201 1.06448 0.93494 0.95360 1.26056 0.94072 0.94633 1.04446 1.70075 1.40367 1.16113 1.32543 0.85602 0.78360 0.80440 0.77924 1.19238 1.20360 1.16603 0.90615 0.92766 0.88348 0.81291 0.80825 0.82201 0.70856 0.91782 0.94224 0.93949 0.92389 0.95068 0.96463 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.79 71.24 0.70 -1.58 16 2 C -0.13 -2.81 5.89 -19.80 -0.12 -2.93 16 3 C -0.06 -0.86 9.68 22.30 0.22 -0.64 16 4 C -0.13 -1.54 10.02 22.23 0.22 -1.32 16 5 C -0.05 -0.90 9.61 22.53 0.22 -0.68 16 6 C -0.18 -4.65 5.89 -20.02 -0.12 -4.77 16 7 C 0.52 15.13 8.26 70.24 0.58 15.71 16 8 O -0.53 -20.67 14.81 26.81 0.40 -20.28 16 9 O -0.50 -10.00 12.68 -56.63 -0.72 -10.71 16 10 C 0.13 3.77 5.71 22.86 0.13 3.90 16 11 O -0.34 -12.74 7.52 -68.66 -0.52 -13.26 16 12 C 0.10 3.68 5.42 71.98 0.39 4.07 16 13 C -0.09 -4.07 5.52 30.59 0.17 -3.90 16 14 C 0.00 -0.13 4.04 29.85 0.12 -0.01 16 15 C -0.54 -33.08 9.66 25.60 0.25 -32.84 16 16 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 17 C 0.00 0.29 5.47 84.65 0.46 0.75 16 18 N -0.95 -61.68 13.96 21.45 0.30 -61.38 16 19 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 23 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.05 1.36 7.53 -2.39 -0.02 1.34 16 25 H 0.10 1.32 8.08 -2.39 -0.02 1.30 16 26 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 27 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 28 H 0.16 2.00 7.61 -2.91 -0.02 1.98 16 29 H 0.43 5.16 9.11 -74.06 -0.67 4.49 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.04 1.55 7.51 -2.39 -0.02 1.53 16 32 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 35 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 36 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -80.86 311.74 4.92 -75.94 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.36 Total: 6.63 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 3.22 Total: -24.23 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.30 Total: -61.38 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.84 Total: -44.25 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -80.86 4.92 -75.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037729831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.368 kcal (2) G-P(sol) polarization free energy of solvation -80.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds