Wall clock time and date at job start Mon Mar 30 2020 06:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47234 * 2 1 4 4 C 1.50700 * 109.47334 * 119.99638 * 2 1 3 5 5 C 1.38842 * 119.99336 * 300.01319 * 4 2 1 6 6 O 1.35788 * 120.01201 * 0.02832 * 5 4 2 7 7 C 1.34822 * 116.99918 * 174.37607 * 6 5 4 8 8 H 1.07997 * 119.99681 * 5.06010 * 7 6 5 9 9 C 1.38625 * 119.99675 * 185.06262 * 7 6 5 10 10 N 1.31574 * 120.00674 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99497 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47310 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46917 * 119.99995 * 11 9 7 14 14 H 1.48500 * 109.46954 * 239.99986 * 11 9 7 15 15 C 1.38838 * 119.97151 * 180.02562 * 5 4 2 16 16 C 1.38137 * 120.04228 * 0.07863 * 15 5 4 17 17 C 1.38718 * 120.15217 * 359.96244 * 16 15 5 18 18 C 1.38564 * 119.99148 * 119.99676 * 4 2 1 19 19 O 1.36111 * 119.34679 * 359.58928 * 18 4 2 20 20 C 1.43198 * 116.70173 * 162.81536 * 19 18 4 21 21 C 1.53462 * 108.23087 * 46.31066 * 20 19 18 22 22 O 1.36164 * 119.32911 * 179.73115 * 17 16 15 23 23 H 1.09003 * 109.47334 * 299.99848 * 1 2 3 24 24 H 1.08995 * 109.47362 * 60.00479 * 1 2 3 25 25 H 1.09001 * 109.47047 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47578 * 239.99692 * 2 1 3 27 27 H 1.08995 * 109.46554 * 300.00015 * 3 2 1 28 28 H 1.09003 * 109.46836 * 59.99847 * 3 2 1 29 29 H 1.08993 * 109.47103 * 180.02562 * 3 2 1 30 30 H 0.97000 * 120.00382 * 179.97438 * 10 9 7 31 31 H 1.08005 * 119.98328 * 180.02562 * 15 5 4 32 32 H 1.07997 * 119.92315 * 179.97438 * 16 15 5 33 33 H 1.09003 * 109.74736 * 286.61336 * 20 19 18 34 34 H 1.09000 * 109.69060 * 165.97917 * 20 19 18 35 35 H 1.09003 * 109.70922 * 180.52435 * 21 20 19 36 36 H 1.09001 * 109.70946 * 59.90188 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6967 -0.2359 2.4914 6 8 0.9153 0.8676 2.6161 7 6 0.5306 1.2075 3.8628 8 1 0.9102 0.6604 4.7130 9 6 -0.3523 2.2592 4.0531 10 7 -0.8152 2.9254 3.0172 11 14 -0.8858 2.7296 5.7804 12 1 -0.2291 1.8310 6.7634 13 1 -0.4928 4.1353 6.0543 14 1 -2.3603 2.5962 5.8966 15 6 2.1602 -0.8904 3.6248 16 6 2.9564 -2.0121 3.4986 17 6 3.2946 -2.4886 2.2404 18 6 2.8289 -1.8369 1.1032 19 8 3.1424 -2.2953 -0.1395 20 6 4.2469 -3.2022 -0.2311 21 6 4.0914 -4.2608 0.8690 22 8 4.0849 -3.5924 2.1355 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4425 -0.0005 30 1 -1.4332 3.6611 3.1504 31 1 1.8988 -0.5218 4.6057 32 1 3.3162 -2.5195 4.3814 33 1 5.1816 -2.6596 -0.0896 34 1 4.2457 -3.6848 -1.2085 35 1 4.9266 -4.9600 0.8270 36 1 3.1535 -4.7989 0.7315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039135179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:44 Heat of formation + Delta-G solvation = -82.787911 kcal Electronic energy + Delta-G solvation = -20683.212120 eV Core-core repulsion = 17519.822782 eV Total energy + Delta-G solvation = -3163.389338 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71111 -38.71190 -36.79753 -35.76934 -34.18198 -32.21760 -30.36391 -28.82806 -27.23717 -26.21825 -25.54646 -23.85321 -22.56292 -20.72692 -19.53859 -18.32881 -17.74837 -16.68880 -16.35229 -15.90011 -14.87959 -14.59762 -14.34245 -14.17739 -13.93922 -13.66679 -13.49177 -13.14789 -12.74049 -12.56641 -12.15219 -11.83173 -11.67595 -11.36366 -11.15921 -10.99818 -10.90861 -10.62504 -10.46940 -10.32640 -10.02111 -9.93393 -9.87786 -9.10272 -8.73470 -7.66530 -6.90339 -6.44723 -4.01817 2.04893 2.23871 3.12253 3.15016 3.19925 3.48503 3.68032 3.99833 4.45318 4.55738 4.99935 5.05938 5.09317 5.22253 5.30321 5.47563 5.62682 5.72852 5.79324 5.94214 6.09219 6.12544 6.33389 6.50294 6.57801 6.63248 6.72330 6.83796 6.93800 6.95264 7.19084 7.25276 7.27130 7.31642 7.45569 7.62461 8.02832 8.07263 9.01532 9.69771 10.72493 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.027141 B = 0.006463 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.397102 B = 4331.190732 C = 5149.223941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.025 4.025 3 C -0.145 4.145 4 C -0.146 4.146 5 C 0.164 3.836 6 O -0.160 6.160 7 C -0.394 4.394 8 H 0.091 0.909 9 C 0.042 3.958 10 N -0.858 5.858 11 Si 0.938 3.062 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.227 4.227 16 C -0.069 4.069 17 C -0.045 4.045 18 C 0.094 3.906 19 O -0.307 6.307 20 C 0.023 3.977 21 C 0.024 3.976 22 O -0.315 6.315 23 H 0.087 0.913 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.269 0.731 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.655 -8.972 -4.021 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.148 4.148 5 C 0.110 3.890 6 O -0.064 6.064 7 C -0.470 4.470 8 H 0.109 0.891 9 C -0.162 4.162 10 N -0.493 5.493 11 Si 0.763 3.237 12 H -0.192 1.192 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.247 4.247 16 C -0.087 4.087 17 C -0.089 4.089 18 C 0.049 3.951 19 O -0.222 6.222 20 C -0.053 4.053 21 C -0.052 4.052 22 O -0.231 6.231 23 H 0.106 0.894 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.155 0.845 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.421 -8.634 -4.260 11.573 hybrid contribution -0.058 -0.085 0.835 0.842 sum 6.363 -8.718 -3.425 11.324 Atomic orbital electron populations 1.21852 0.94739 1.00593 1.03120 1.19581 0.95694 0.95169 0.93916 1.21848 0.99375 0.95995 1.02954 1.18204 1.06432 0.96377 0.93817 1.18727 0.91264 0.87563 0.91487 1.84013 1.56832 1.34775 1.30738 1.21387 1.27011 1.16561 0.82056 0.89115 1.25206 0.95809 0.95729 0.99468 1.70035 1.29804 1.19921 1.29558 0.85695 0.78693 0.78739 0.80597 1.19175 1.20251 1.20246 1.20982 1.05044 0.99126 0.99526 1.20014 0.97928 0.96819 0.93987 1.18405 1.04833 0.92087 0.93563 1.18143 0.99804 0.94575 0.82564 1.86254 1.48750 1.60974 1.26178 1.23497 0.89736 0.91526 1.00574 1.23403 1.03355 0.94562 0.83909 1.86226 1.64003 1.39924 1.32996 0.89388 0.93819 0.94241 0.91671 0.93738 0.89704 0.94236 0.92120 0.84530 0.86237 0.91153 0.87059 0.87274 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.98 37.16 0.33 -2.69 16 2 C -0.03 -0.52 2.94 -91.77 -0.27 -0.79 16 3 C -0.14 -2.96 8.98 37.16 0.33 -2.62 16 4 C -0.15 -3.21 4.81 -104.28 -0.50 -3.71 16 5 C 0.16 3.88 6.24 -39.14 -0.24 3.63 16 6 O -0.16 -4.23 5.42 -0.05 0.00 -4.23 16 7 C -0.39 -10.47 9.48 30.88 0.29 -10.18 16 8 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 9 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 10 N -0.86 -23.88 13.67 55.48 0.76 -23.12 16 11 Si 0.94 20.01 29.55 -169.99 -5.02 14.99 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 C -0.23 -4.95 9.16 -39.40 -0.36 -5.31 16 16 C -0.07 -1.35 9.95 -39.44 -0.39 -1.74 16 17 C -0.05 -0.89 6.50 -39.09 -0.25 -1.14 16 18 C 0.09 1.90 6.47 -39.14 -0.25 1.65 16 19 O -0.31 -5.44 9.13 -32.86 -0.30 -5.74 16 20 C 0.02 0.29 7.26 37.40 0.27 0.56 16 21 C 0.02 0.30 7.26 37.40 0.27 0.57 16 22 O -0.32 -5.43 10.42 -33.03 -0.34 -5.78 16 23 H 0.09 2.14 6.13 -51.93 -0.32 1.82 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.26 6.94 -51.93 -0.36 0.90 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 2.02 6.14 -51.93 -0.32 1.71 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.14 2.90 5.63 -52.48 -0.30 2.60 16 32 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 294.58 15.07 4.44 4.44 Total: -1.00 -29.64 294.58 -5.85 -35.49 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.51 Total: 4.71 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -0.87 Total: -20.76 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.76 Total: -23.12 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.64 Total: -15.75 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.64 -5.85 -35.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039135179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.302 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds