Wall clock time and date at job start Mon Mar 30 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35981 * 117.00363 * 2 1 4 4 C 1.38726 * 119.99628 * 0.02562 * 3 2 1 5 5 C 1.38113 * 119.99634 * 179.70141 * 4 3 2 6 6 C 1.38714 * 120.00321 * 0.55287 * 5 4 3 7 7 O 1.35981 * 120.00486 * 179.72086 * 6 5 4 8 8 C 1.42905 * 116.99586 * 359.72953 * 7 6 5 9 9 C 1.38676 * 119.99734 * 359.44725 * 6 5 4 10 10 C 1.50698 * 120.00084 * 180.29440 * 9 6 5 11 11 C 1.53002 * 109.47021 * 85.00366 * 10 9 6 12 12 C 1.50706 * 109.47421 * 180.02562 * 11 10 9 13 13 O 1.21434 * 119.99692 * 0.02562 * 12 11 10 14 14 C 1.41022 * 119.99975 * 179.97438 * 12 11 10 15 15 H 1.08001 * 120.00362 * 359.97438 * 14 12 11 16 16 C 1.40460 * 119.99633 * 179.97438 * 14 12 11 17 17 N 1.30516 * 120.00306 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99720 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47275 * 90.00221 * 18 16 14 20 20 H 1.48502 * 109.47204 * 210.00351 * 18 16 14 21 21 H 1.48504 * 109.47404 * 330.00026 * 18 16 14 22 22 C 1.38155 * 120.00047 * 0.27976 * 9 6 5 23 23 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46555 * 299.99411 * 1 2 3 25 25 H 1.08996 * 109.47531 * 59.99513 * 1 2 3 26 26 H 1.07998 * 119.99994 * 359.97438 * 4 3 2 27 27 H 1.08006 * 119.99555 * 180.29573 * 5 4 3 28 28 H 1.09001 * 109.47103 * 180.02562 * 8 7 6 29 29 H 1.09004 * 109.47054 * 299.99751 * 8 7 6 30 30 H 1.09000 * 109.47187 * 59.99807 * 8 7 6 31 31 H 1.09005 * 109.47486 * 205.00022 * 10 9 6 32 32 H 1.09003 * 109.47450 * 325.00643 * 10 9 6 33 33 H 1.09005 * 109.46709 * 300.00131 * 11 10 9 34 34 H 1.09001 * 109.47518 * 59.99956 * 11 10 9 35 35 H 0.97004 * 120.00359 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.00030 * 179.97438 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0068 6 6 3.3031 3.6782 0.0009 7 8 3.9206 4.8898 0.0013 8 6 3.0806 6.0459 0.0019 9 6 4.0584 2.5152 0.0004 10 6 5.5633 2.5940 0.0007 11 6 6.0658 2.7453 1.4379 12 6 7.5707 2.8248 1.4383 13 8 8.1820 2.7665 0.3907 14 6 8.2690 2.9678 2.6552 15 1 7.7252 3.0208 3.5868 16 6 9.6716 3.0413 2.6555 17 7 10.3288 2.9778 1.5296 18 14 10.5965 3.2315 4.2673 19 1 10.9146 1.8892 4.8169 20 1 11.8566 3.9804 4.0296 21 1 9.7536 3.9763 5.2369 22 6 3.4312 1.2842 -0.0002 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2123 2.3185 0.0005 27 1 1.3297 4.5113 0.0120 28 1 3.6984 6.9439 0.0017 29 1 2.4512 6.0382 -0.8880 30 1 2.4514 6.0374 0.8920 31 1 5.9751 1.6831 -0.4341 32 1 5.8823 3.4541 -0.5881 33 1 5.6540 3.6561 1.8727 34 1 5.7469 1.8853 2.0268 35 1 11.2975 3.0289 1.5298 36 1 4.0194 0.3784 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041260400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:48 Heat of formation + Delta-G solvation = -100.822293 kcal Electronic energy + Delta-G solvation = -19399.452815 eV Core-core repulsion = 16235.281447 eV Total energy + Delta-G solvation = -3164.171367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.36670 -38.84694 -36.95108 -36.18491 -33.17573 -32.35960 -30.09103 -29.01766 -27.45475 -26.83863 -26.64806 -23.63634 -21.99683 -20.83613 -18.98169 -17.79095 -17.38070 -16.68873 -16.13426 -15.77885 -15.43170 -15.08388 -14.70371 -14.35455 -13.92600 -13.58975 -13.07729 -12.98779 -12.73977 -12.63819 -12.43177 -11.88299 -11.58675 -11.52296 -11.32560 -11.20192 -10.88888 -10.76476 -10.50106 -10.31569 -10.14221 -10.00743 -9.78885 -8.82110 -8.65795 -7.55577 -7.22512 -6.11172 -4.77888 1.41560 1.63786 3.11238 3.19414 3.23357 3.30686 3.55536 3.87887 4.11460 4.36349 4.76651 4.85842 5.00404 5.03716 5.14002 5.22223 5.27589 5.34391 5.53971 5.57885 5.59036 5.62873 5.98094 6.02417 6.31382 6.35774 6.37912 6.47536 6.68128 6.85396 6.98550 7.20239 7.21773 7.36339 7.40100 7.67348 8.20612 8.94378 9.03345 10.46626 10.71339 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.004393 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.908920 B = 6372.186312 C = 6986.130533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.090 3.910 4 C -0.184 4.184 5 C -0.172 4.172 6 C 0.094 3.906 7 O -0.304 6.304 8 C 0.028 3.972 9 C -0.055 4.055 10 C -0.057 4.057 11 C -0.147 4.147 12 C 0.365 3.635 13 O -0.546 6.546 14 C -0.538 4.538 15 H 0.067 0.933 16 C 0.084 3.916 17 N -0.743 5.743 18 Si 0.902 3.098 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.113 4.113 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.271 0.729 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.651 0.605 -1.704 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.045 3.955 4 C -0.203 4.203 5 C -0.190 4.190 6 C 0.049 3.951 7 O -0.217 6.217 8 C -0.067 4.067 9 C -0.056 4.056 10 C -0.095 4.095 11 C -0.186 4.186 12 C 0.260 3.740 13 O -0.435 6.435 14 C -0.570 4.570 15 H 0.085 0.915 16 C -0.139 4.139 17 N -0.372 5.372 18 Si 0.727 3.273 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.132 4.132 23 H 0.114 0.886 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.945 0.437 -2.337 18.102 hybrid contribution -0.365 0.408 1.029 1.166 sum -18.310 0.845 -1.308 18.376 Atomic orbital electron populations 1.22971 0.79105 1.03492 1.00979 1.86076 1.20742 1.26991 1.89491 1.18861 0.92189 0.83952 1.00475 1.20855 0.99425 0.91747 1.08237 1.20928 0.93181 0.98118 1.06821 1.18782 0.90456 0.85648 1.00238 1.86222 1.34764 1.11870 1.88872 1.23002 0.95864 0.87235 1.00600 1.19505 0.97496 0.89284 0.99305 1.20261 0.86573 1.03538 0.99083 1.21995 1.01116 1.01017 0.94435 1.19494 0.86681 0.77991 0.89872 1.90387 1.69777 1.48835 1.34465 1.20820 0.91882 1.48698 0.95615 0.91474 1.26003 0.98305 0.92630 0.96941 1.69962 1.08151 1.32181 1.26900 0.86455 0.79090 0.79068 0.82726 1.19526 1.20313 1.18680 1.20219 0.91000 0.97813 1.04152 0.88584 0.92985 0.93029 0.85757 0.85573 0.88367 0.93226 0.93078 0.91002 0.90331 0.91776 0.92118 0.91802 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.30 10.50 -19.68 -0.21 -4.50 16 3 C 0.09 1.32 6.69 -39.24 -0.26 1.06 16 4 C -0.18 -2.39 9.03 -39.45 -0.36 -2.75 16 5 C -0.17 -2.34 9.03 -39.45 -0.36 -2.69 16 6 C 0.09 1.56 6.66 -39.24 -0.26 1.30 16 7 O -0.30 -5.08 9.63 -19.68 -0.19 -5.27 16 8 C 0.03 0.32 9.81 101.05 0.99 1.31 16 9 C -0.06 -1.00 5.14 -104.49 -0.54 -1.54 16 10 C -0.06 -1.22 4.35 -27.88 -0.12 -1.34 16 11 C -0.15 -3.44 5.55 -27.88 -0.15 -3.59 16 12 C 0.37 10.56 6.90 -33.25 -0.23 10.33 16 13 O -0.55 -17.59 14.50 5.42 0.08 -17.51 16 14 C -0.54 -15.49 9.22 -37.69 -0.35 -15.83 16 15 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 16 C 0.08 2.34 5.50 -17.27 -0.10 2.25 16 17 N -0.74 -22.11 11.72 55.57 0.65 -21.46 16 18 Si 0.90 20.04 29.56 -169.99 -5.03 15.01 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 21 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 22 C -0.11 -1.87 9.61 -39.45 -0.38 -2.25 16 23 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 26 H 0.12 1.24 6.29 -52.49 -0.33 0.91 16 27 H 0.13 1.36 6.29 -52.48 -0.33 1.03 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 30 H 0.05 0.50 7.65 -51.93 -0.40 0.11 16 31 H 0.07 1.56 8.01 -51.93 -0.42 1.14 16 32 H 0.08 1.80 7.64 -51.93 -0.40 1.40 16 33 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 36 H 0.14 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -34.64 310.21 -5.86 -40.50 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.72 Total: 1.06 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -1.12 Total: -12.50 kcal Atomic # 7 Polarization: -22.11 SS G_CDS: 0.65 Total: -21.46 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.32 Total: -27.28 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.64 -5.86 -40.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041260400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.325 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds