Wall clock time and date at job start Mon Mar 30 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35981 * 117.00363 * 2 1 4 4 C 1.38726 * 119.99628 * 0.02562 * 3 2 1 5 5 C 1.38113 * 119.99634 * 179.70141 * 4 3 2 6 6 C 1.38714 * 120.00321 * 0.55287 * 5 4 3 7 7 O 1.35981 * 120.00486 * 179.72086 * 6 5 4 8 8 C 1.42905 * 116.99586 * 359.72953 * 7 6 5 9 9 C 1.38676 * 119.99734 * 359.44725 * 6 5 4 10 10 C 1.50698 * 120.00084 * 180.29440 * 9 6 5 11 11 C 1.53002 * 109.47021 * 85.00366 * 10 9 6 12 12 C 1.50706 * 109.47421 * 180.02562 * 11 10 9 13 13 O 1.21434 * 119.99692 * 0.02562 * 12 11 10 14 14 C 1.41022 * 119.99975 * 179.97438 * 12 11 10 15 15 H 1.08001 * 120.00362 * 359.97438 * 14 12 11 16 16 C 1.40460 * 119.99633 * 179.97438 * 14 12 11 17 17 N 1.30516 * 120.00306 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99720 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47275 * 90.00221 * 18 16 14 20 20 H 1.48502 * 109.47204 * 210.00351 * 18 16 14 21 21 H 1.48504 * 109.47404 * 330.00026 * 18 16 14 22 22 C 1.38155 * 120.00047 * 0.27976 * 9 6 5 23 23 H 1.09002 * 109.47170 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46555 * 299.99411 * 1 2 3 25 25 H 1.08996 * 109.47531 * 59.99513 * 1 2 3 26 26 H 1.07998 * 119.99994 * 359.97438 * 4 3 2 27 27 H 1.08006 * 119.99555 * 180.29573 * 5 4 3 28 28 H 1.09001 * 109.47103 * 180.02562 * 8 7 6 29 29 H 1.09004 * 109.47054 * 299.99751 * 8 7 6 30 30 H 1.09000 * 109.47187 * 59.99807 * 8 7 6 31 31 H 1.09005 * 109.47486 * 205.00022 * 10 9 6 32 32 H 1.09003 * 109.47450 * 325.00643 * 10 9 6 33 33 H 1.09005 * 109.46709 * 300.00131 * 11 10 9 34 34 H 1.09001 * 109.47518 * 59.99956 * 11 10 9 35 35 H 0.97004 * 120.00359 * 179.97438 * 17 16 14 36 36 H 1.08003 * 120.00030 * 179.97438 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0068 6 6 3.3031 3.6782 0.0009 7 8 3.9206 4.8898 0.0013 8 6 3.0806 6.0459 0.0019 9 6 4.0584 2.5152 0.0004 10 6 5.5633 2.5940 0.0007 11 6 6.0658 2.7453 1.4379 12 6 7.5707 2.8248 1.4383 13 8 8.1820 2.7665 0.3907 14 6 8.2690 2.9678 2.6552 15 1 7.7252 3.0208 3.5868 16 6 9.6716 3.0413 2.6555 17 7 10.3288 2.9778 1.5296 18 14 10.5965 3.2315 4.2673 19 1 10.9146 1.8892 4.8169 20 1 11.8566 3.9804 4.0296 21 1 9.7536 3.9763 5.2369 22 6 3.4312 1.2842 -0.0002 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.2123 2.3185 0.0005 27 1 1.3297 4.5113 0.0120 28 1 3.6984 6.9439 0.0017 29 1 2.4512 6.0382 -0.8880 30 1 2.4514 6.0374 0.8920 31 1 5.9751 1.6831 -0.4341 32 1 5.8823 3.4541 -0.5881 33 1 5.6540 3.6561 1.8727 34 1 5.7469 1.8853 2.0268 35 1 11.2975 3.0289 1.5298 36 1 4.0194 0.3784 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041260400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:48 Heat of formation + Delta-G solvation = -123.866637 kcal Electronic energy + Delta-G solvation = -19400.452092 eV Core-core repulsion = 16235.281447 eV Total energy + Delta-G solvation = -3165.170645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.49483 -39.89363 -39.02130 -37.44977 -34.96779 -34.27995 -31.36729 -30.45632 -28.93875 -28.09536 -27.70365 -25.31978 -23.13910 -22.18216 -20.96607 -18.95888 -18.50247 -18.24729 -17.80369 -17.14014 -16.71405 -16.37174 -15.77910 -15.61163 -15.49710 -15.19314 -15.02554 -14.40262 -14.02659 -13.68071 -13.62838 -13.33351 -13.22103 -12.84166 -12.65403 -12.64546 -12.41476 -12.36425 -12.20920 -12.00916 -11.71982 -11.51231 -11.28107 -10.95556 -9.93238 -9.46965 -8.66544 -8.25321 -7.07537 0.24436 0.48238 1.36097 1.37643 1.54878 2.21686 2.22997 2.38030 2.53953 2.70717 3.40749 3.72757 3.78766 4.12319 4.18390 4.28624 4.37587 4.43636 4.45564 4.46611 4.53399 4.54724 4.68973 4.74328 4.78404 4.93730 5.00656 5.01772 5.19212 5.21563 5.27167 5.38983 5.44884 5.69466 5.99663 6.41184 6.60665 6.74258 6.84214 8.30574 8.54351 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.004393 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.908920 B = 6372.186312 C = 6986.130533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.088 3.912 4 C -0.168 4.168 5 C -0.161 4.161 6 C 0.080 3.920 7 O -0.340 6.340 8 C 0.018 3.982 9 C -0.083 4.083 10 C -0.041 4.041 11 C -0.132 4.132 12 C 0.338 3.662 13 O -0.593 6.593 14 C -0.568 4.568 15 H 0.083 0.917 16 C 0.026 3.974 17 N -0.792 5.792 18 Si 0.995 3.005 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.249 1.249 22 C -0.129 4.129 23 H 0.116 0.884 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.164 0.836 27 H 0.162 0.838 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.281 0.719 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.219 1.138 -0.004 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.043 3.957 4 C -0.187 4.187 5 C -0.179 4.179 6 C 0.035 3.965 7 O -0.255 6.255 8 C -0.076 4.076 9 C -0.084 4.084 10 C -0.079 4.079 11 C -0.170 4.170 12 C 0.236 3.764 13 O -0.486 6.486 14 C -0.599 4.599 15 H 0.101 0.899 16 C -0.193 4.193 17 N -0.421 5.421 18 Si 0.813 3.187 19 H -0.182 1.182 20 H -0.191 1.191 21 H -0.172 1.172 22 C -0.148 4.148 23 H 0.135 0.865 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.182 0.818 27 H 0.180 0.820 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.556 0.970 -0.633 20.588 hybrid contribution 0.311 0.228 0.452 0.594 sum -20.244 1.198 -0.181 20.281 Atomic orbital electron populations 1.23349 0.76417 1.05515 1.02353 1.86061 1.23514 1.26428 1.89261 1.18879 0.91578 0.85294 0.99976 1.21295 1.01268 0.90589 1.05523 1.21287 0.91890 0.99861 1.04882 1.18918 0.91701 0.85127 1.00737 1.86174 1.37152 1.13067 1.89063 1.23324 0.96193 0.85678 1.02427 1.19179 0.95246 0.91059 1.02937 1.19915 0.89675 1.01244 0.97067 1.21741 0.97399 1.01602 0.96246 1.20294 0.89326 0.77163 0.89588 1.90342 1.71445 1.51049 1.35786 1.21357 0.93337 1.49039 0.96205 0.89865 1.27271 0.99088 0.91191 1.01758 1.70098 1.09152 1.32510 1.30313 0.85073 0.77427 0.79719 0.76465 1.18210 1.19135 1.17246 1.20180 0.92472 0.96963 1.05138 0.86534 0.91564 0.91479 0.81824 0.82046 0.87504 0.91146 0.91268 0.92878 0.93064 0.91228 0.90955 0.90881 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.45 10.50 -93.34 -0.98 -9.43 16 3 C 0.09 2.45 6.69 22.49 0.15 2.60 16 4 C -0.17 -3.78 9.03 22.36 0.20 -3.58 16 5 C -0.16 -3.89 9.03 22.35 0.20 -3.69 16 6 C 0.08 2.62 6.66 22.49 0.15 2.77 16 7 O -0.34 -11.40 9.63 -93.34 -0.90 -12.30 16 8 C 0.02 0.37 9.81 113.37 1.11 1.49 16 9 C -0.08 -3.12 5.14 -19.78 -0.10 -3.23 16 10 C -0.04 -1.90 4.35 29.85 0.13 -1.77 16 11 C -0.13 -6.46 5.55 29.85 0.17 -6.30 16 12 C 0.34 20.55 6.90 26.37 0.18 20.74 16 13 O -0.59 -40.68 14.50 -3.51 -0.05 -40.73 16 14 C -0.57 -33.50 9.22 23.49 0.22 -33.29 16 15 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 16 C 0.03 1.44 5.50 85.43 0.47 1.91 16 17 N -0.79 -48.57 11.72 21.91 0.26 -48.31 16 18 Si 0.99 41.00 29.56 68.60 2.03 43.03 16 19 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 22 C -0.13 -4.36 9.61 22.35 0.21 -4.14 16 23 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 0.74 7.66 -2.38 -0.02 0.72 16 25 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 26 H 0.16 2.36 6.29 -2.91 -0.02 2.34 16 27 H 0.16 2.70 6.29 -2.91 -0.02 2.69 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.15 7.67 -2.38 -0.02 1.13 16 30 H 0.07 1.17 7.65 -2.39 -0.02 1.15 16 31 H 0.05 2.52 8.01 -2.38 -0.02 2.50 16 32 H 0.05 2.55 7.64 -2.39 -0.02 2.53 16 33 H 0.07 3.28 8.14 -2.38 -0.02 3.27 16 34 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.28 15.36 8.29 -92.70 -0.77 14.59 16 36 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -79.77 310.21 5.64 -74.12 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.08 Total: 18.74 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 4.21 Total: -25.12 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.26 Total: -48.31 kcal Atomic # 8 Polarization: -60.53 SS G_CDS: -1.93 Total: -62.46 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -79.77 5.64 -74.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041260400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.745 kcal (2) G-P(sol) polarization free energy of solvation -79.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds