Wall clock time and date at job start Mon Mar 30 2020 06:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 O 1.42904 * 109.47396 * 64.99575 * 10 9 7 13 13 C 1.50699 * 109.47337 * 184.99952 * 10 9 7 14 14 C 1.38250 * 119.89179 * 280.00008 * 13 10 9 15 15 C 1.38342 * 120.21935 * 179.97438 * 14 13 10 16 16 C 1.38463 * 119.71436 * 359.97295 * 15 14 13 17 17 C 1.38750 * 120.06326 * 0.03821 * 16 15 14 18 18 C 1.38342 * 119.89117 * 99.72679 * 13 10 9 19 19 O 1.36474 * 119.60134 * 179.97438 * 17 16 15 20 20 C 1.42901 * 115.91802 * 291.74010 * 19 17 16 21 21 C 1.52063 * 110.77824 * 84.42293 * 20 19 17 22 22 C 1.52061 * 112.37721 * 295.17365 * 21 20 19 23 23 O 1.36462 * 120.31156 * 180.02562 * 16 15 14 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 0.96708 * 113.99258 * 60.00195 * 12 10 9 28 28 H 1.08008 * 119.89205 * 359.94681 * 14 13 10 29 29 H 1.08007 * 120.14436 * 180.02562 * 15 14 13 30 30 H 1.08001 * 120.14672 * 0.02562 * 18 13 10 31 31 H 1.09008 * 109.21366 * 324.08850 * 20 19 17 32 32 H 1.09001 * 109.21817 * 204.75921 * 20 19 17 33 33 H 1.09000 * 108.89784 * 174.42678 * 21 20 19 34 34 H 1.09002 * 108.81997 * 55.87295 * 21 20 19 35 35 H 1.08997 * 109.22142 * 304.46757 * 22 21 20 36 36 H 1.09005 * 109.21851 * 185.12493 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 8 2.9875 -3.6542 1.2216 13 6 1.4957 -4.9637 -0.1233 14 6 0.8948 -5.5214 0.9899 15 6 0.2047 -6.7157 0.8839 16 6 0.1173 -7.3512 -0.3432 17 6 0.7206 -6.7916 -1.4603 18 6 1.4064 -5.5937 -1.3517 19 8 0.6289 -7.4263 -2.6650 20 6 1.3338 -8.6646 -2.7738 21 6 0.4956 -9.8118 -2.2319 22 6 0.2344 -9.6833 -0.7394 23 8 -0.5608 -8.5295 -0.4618 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.4414 -3.7456 2.0144 28 1 0.9648 -5.0232 1.9457 29 1 -0.2646 -7.1500 1.7543 30 1 1.8729 -5.1550 -2.2214 31 1 2.2626 -8.5997 -2.2067 32 1 1.5666 -8.8541 -3.8216 33 1 1.0180 -10.7500 -2.4194 34 1 -0.4592 -9.8286 -2.7575 35 1 1.1858 -9.5978 -0.2146 36 1 -0.2892 -10.5728 -0.3889 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041260440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:04 Heat of formation + Delta-G solvation = -108.242370 kcal Electronic energy + Delta-G solvation = -19826.485647 eV Core-core repulsion = 16661.992521 eV Total energy + Delta-G solvation = -3164.493126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78658 -38.32885 -37.41614 -35.92123 -32.91402 -32.86494 -30.98453 -29.67368 -28.30070 -26.66558 -24.59949 -22.83005 -21.99701 -21.66608 -20.34772 -18.45278 -17.05836 -16.94541 -16.39085 -15.61527 -15.43832 -15.40311 -14.66822 -14.29299 -14.15029 -13.96205 -13.80007 -13.37803 -13.24519 -12.57329 -12.41222 -11.88817 -11.77767 -11.36216 -11.11355 -10.95487 -10.79320 -10.62444 -10.49669 -10.46135 -10.19666 -9.82328 -9.17471 -9.04338 -8.60368 -8.38924 -8.07196 -6.01094 -4.03422 1.27718 1.41913 3.35087 3.39057 3.42033 3.45217 3.45601 3.98544 4.46342 4.46368 4.56204 4.92717 4.97970 5.09426 5.14710 5.15777 5.26329 5.36713 5.38142 5.42209 5.50027 5.61430 5.65621 5.76922 5.95848 6.24865 6.36251 6.46243 6.59123 6.71478 6.87381 7.15274 7.50750 7.59944 7.66347 7.95343 8.32018 8.42905 9.02696 9.60368 11.10024 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.038264 B = 0.004227 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.581755 B = 6622.784949 C = 6781.734887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.002 3.998 10 C 0.145 3.855 11 H 0.098 0.902 12 O -0.554 6.554 13 C -0.082 4.082 14 C -0.105 4.105 15 C -0.113 4.113 16 C 0.048 3.952 17 C 0.065 3.935 18 C -0.110 4.110 19 O -0.319 6.319 20 C 0.059 3.941 21 C -0.186 4.186 22 C 0.059 3.941 23 O -0.320 6.320 24 H 0.261 0.739 25 H 0.022 0.978 26 H 0.027 0.973 27 H 0.365 0.635 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.950 -19.566 -1.272 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.079 0.921 9 C -0.036 4.036 10 C 0.086 3.914 11 H 0.116 0.884 12 O -0.359 6.359 13 C -0.083 4.083 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.005 3.995 17 C 0.022 3.978 18 C -0.129 4.129 19 O -0.236 6.236 20 C -0.016 4.016 21 C -0.224 4.224 22 C -0.016 4.016 23 O -0.237 6.237 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.212 0.788 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.004 -19.359 -1.843 19.549 hybrid contribution 0.012 0.650 0.317 0.723 sum 2.017 -18.709 -1.526 18.879 Atomic orbital electron populations 1.69960 1.06069 1.26824 1.50705 1.25015 0.94834 0.99310 0.95304 0.86607 0.79500 0.82899 0.78695 1.20232 1.21381 1.20177 1.21100 0.93265 0.90265 1.50620 0.92117 1.19757 0.93892 0.91539 0.98363 1.21191 0.93667 0.89363 0.87181 0.88430 1.86537 1.37496 1.96354 1.15468 1.21047 0.97257 0.97443 0.92554 1.20859 0.97292 0.95055 0.99139 1.20997 0.99721 0.96680 0.95762 1.19047 0.98695 0.88954 0.92836 1.19078 0.99336 0.94553 0.84875 1.20958 0.98839 0.94885 0.98172 1.86377 1.71527 1.35471 1.30208 1.22589 0.93722 0.82940 1.02318 1.22467 1.02724 0.99611 0.97582 1.22576 0.96034 0.88037 0.94924 1.86354 1.32966 1.13654 1.90695 0.92904 0.95956 0.95442 0.78844 0.85166 0.85070 0.84708 0.92544 0.88117 0.89506 0.89952 0.92624 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.37 8.88 -34.44 -0.31 -14.68 16 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 9 C 0.00 0.04 4.63 -27.88 -0.13 -0.09 16 10 C 0.14 2.95 3.15 -27.89 -0.09 2.86 16 11 H 0.10 2.00 8.01 -51.93 -0.42 1.58 16 12 O -0.55 -10.96 12.94 -35.23 -0.46 -11.41 16 13 C -0.08 -1.47 4.98 -104.58 -0.52 -1.99 16 14 C -0.11 -1.67 9.31 -39.54 -0.37 -2.04 16 15 C -0.11 -1.68 10.01 -39.46 -0.39 -2.07 16 16 C 0.05 0.76 5.73 -39.31 -0.23 0.54 16 17 C 0.07 1.07 5.73 -39.31 -0.23 0.85 16 18 C -0.11 -1.88 9.62 -39.46 -0.38 -2.26 16 19 O -0.32 -4.91 10.16 -36.72 -0.37 -5.29 16 20 C 0.06 0.64 6.51 36.68 0.24 0.87 16 21 C -0.19 -1.68 5.92 -27.69 -0.16 -1.84 16 22 C 0.06 0.60 6.51 36.68 0.24 0.84 16 23 O -0.32 -4.65 10.16 -36.68 -0.37 -5.03 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.36 6.03 7.49 45.56 0.34 6.38 16 28 H 0.13 1.82 6.77 -52.48 -0.36 1.46 16 29 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 30 H 0.14 2.17 8.04 -52.49 -0.42 1.75 16 31 H 0.06 0.57 7.93 -51.92 -0.41 0.16 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.53 7.93 -51.93 -0.41 0.12 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 302.98 15.07 4.57 4.57 Total: -1.00 -32.68 302.98 -7.52 -40.19 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.18 Total: 3.79 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.42 Total: -17.49 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.20 Total: -21.73 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.68 -7.52 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041260440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.048 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds