Wall clock time and date at job start Mon Mar 30 2020 06:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 O 1.42904 * 109.47396 * 64.99575 * 10 9 7 13 13 C 1.50699 * 109.47337 * 184.99952 * 10 9 7 14 14 C 1.38250 * 119.89179 * 280.00008 * 13 10 9 15 15 C 1.38342 * 120.21935 * 179.97438 * 14 13 10 16 16 C 1.38463 * 119.71436 * 359.97295 * 15 14 13 17 17 C 1.38750 * 120.06326 * 0.03821 * 16 15 14 18 18 C 1.38342 * 119.89117 * 99.72679 * 13 10 9 19 19 O 1.36474 * 119.60134 * 179.97438 * 17 16 15 20 20 C 1.42901 * 115.91802 * 291.74010 * 19 17 16 21 21 C 1.52063 * 110.77824 * 84.42293 * 20 19 17 22 22 C 1.52061 * 112.37721 * 295.17365 * 21 20 19 23 23 O 1.36462 * 120.31156 * 180.02562 * 16 15 14 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 0.96708 * 113.99258 * 60.00195 * 12 10 9 28 28 H 1.08008 * 119.89205 * 359.94681 * 14 13 10 29 29 H 1.08007 * 120.14436 * 180.02562 * 15 14 13 30 30 H 1.08001 * 120.14672 * 0.02562 * 18 13 10 31 31 H 1.09008 * 109.21366 * 324.08850 * 20 19 17 32 32 H 1.09001 * 109.21817 * 204.75921 * 20 19 17 33 33 H 1.09000 * 108.89784 * 174.42678 * 21 20 19 34 34 H 1.09002 * 108.81997 * 55.87295 * 21 20 19 35 35 H 1.08997 * 109.22142 * 304.46757 * 22 21 20 36 36 H 1.09005 * 109.21851 * 185.12493 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 8 2.9875 -3.6542 1.2216 13 6 1.4957 -4.9637 -0.1233 14 6 0.8948 -5.5214 0.9899 15 6 0.2047 -6.7157 0.8839 16 6 0.1173 -7.3512 -0.3432 17 6 0.7206 -6.7916 -1.4603 18 6 1.4064 -5.5937 -1.3517 19 8 0.6289 -7.4263 -2.6650 20 6 1.3338 -8.6646 -2.7738 21 6 0.4956 -9.8118 -2.2319 22 6 0.2344 -9.6833 -0.7394 23 8 -0.5608 -8.5295 -0.4618 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.4414 -3.7456 2.0144 28 1 0.9648 -5.0232 1.9457 29 1 -0.2646 -7.1500 1.7543 30 1 1.8729 -5.1550 -2.2214 31 1 2.2626 -8.5997 -2.2067 32 1 1.5666 -8.8541 -3.8216 33 1 1.0180 -10.7500 -2.4194 34 1 -0.4592 -9.8286 -2.7575 35 1 1.1858 -9.5978 -0.2146 36 1 -0.2892 -10.5728 -0.3889 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041260440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:04 Heat of formation + Delta-G solvation = -130.469711 kcal Electronic energy + Delta-G solvation = -19827.449497 eV Core-core repulsion = 16661.992521 eV Total energy + Delta-G solvation = -3165.456976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.90059 -39.66467 -38.48332 -37.33624 -34.98121 -33.83112 -32.39888 -31.14374 -29.84549 -27.64326 -26.34942 -24.01332 -23.67309 -22.54938 -21.79944 -19.55800 -18.69283 -18.05987 -17.89588 -17.27288 -16.60929 -16.45143 -16.37638 -15.66815 -15.38597 -15.09377 -14.96003 -14.69714 -14.39505 -14.34396 -13.74504 -13.20483 -13.14493 -12.96071 -12.67696 -12.50762 -12.29210 -12.22904 -11.95074 -11.79510 -11.38615 -11.26412 -10.93896 -10.68288 -10.57525 -9.84237 -9.36879 -8.18980 -6.29182 0.05434 0.19129 1.41639 1.44191 1.52318 2.30981 2.42397 2.46912 2.79958 3.13941 3.70809 3.72122 3.73135 3.84263 3.89642 4.20667 4.23591 4.24837 4.33939 4.38083 4.43431 4.60733 4.69338 4.76886 4.79964 4.92925 5.08720 5.10731 5.24862 5.38279 5.39075 5.52359 5.69611 5.78026 6.12937 6.21110 6.55562 6.83450 6.93674 7.39288 8.92099 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.038264 B = 0.004227 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.581755 B = 6622.784949 C = 6781.734887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.009 3.991 10 C 0.162 3.838 11 H 0.091 0.909 12 O -0.560 6.560 13 C -0.101 4.101 14 C -0.108 4.108 15 C -0.110 4.110 16 C 0.049 3.951 17 C 0.059 3.941 18 C -0.123 4.123 19 O -0.342 6.342 20 C 0.047 3.953 21 C -0.181 4.181 22 C 0.048 3.952 23 O -0.337 6.337 24 H 0.263 0.737 25 H 0.006 0.994 26 H -0.002 1.002 27 H 0.379 0.621 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.133 0.867 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 -21.096 -0.916 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.028 4.028 10 C 0.103 3.897 11 H 0.109 0.891 12 O -0.367 6.367 13 C -0.102 4.102 14 C -0.126 4.126 15 C -0.129 4.129 16 C 0.005 3.995 17 C 0.015 3.985 18 C -0.142 4.142 19 O -0.260 6.260 20 C -0.027 4.027 21 C -0.219 4.219 22 C -0.026 4.026 23 O -0.255 6.255 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.016 0.984 27 H 0.228 0.772 28 H 0.164 0.836 29 H 0.177 0.823 30 H 0.151 0.849 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.653 -20.915 -1.483 21.135 hybrid contribution -0.216 0.967 0.169 1.005 sum 2.437 -19.948 -1.314 20.139 Atomic orbital electron populations 1.70088 1.07692 1.27803 1.51719 1.25907 0.95682 1.03142 0.94815 0.85530 0.78261 0.78287 0.79141 1.19377 1.20905 1.19229 1.21480 0.93432 0.91742 1.50309 0.92266 1.19608 0.94191 0.92984 0.96054 1.20732 0.92437 0.89173 0.87372 0.89084 1.86491 1.37911 1.96361 1.15901 1.20766 0.98738 0.96897 0.93775 1.21063 0.96884 0.95443 0.99165 1.21253 0.99104 0.95988 0.96514 1.19230 0.97768 0.89651 0.92825 1.19149 0.99285 0.94451 0.85629 1.21008 0.99628 0.95569 0.98000 1.86326 1.72330 1.37451 1.29853 1.22973 0.93886 0.81720 1.04122 1.22459 1.02447 1.00435 0.96524 1.22958 0.96460 0.87184 0.95953 1.86313 1.34128 1.14139 1.90872 0.92803 0.97591 0.98375 0.77239 0.83561 0.82343 0.84874 0.92120 0.85849 0.85725 0.90763 0.91951 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.53 -30.23 8.88 25.60 0.23 -30.00 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.01 0.46 4.63 29.85 0.14 0.60 16 10 C 0.16 6.74 3.15 29.85 0.09 6.84 16 11 H 0.09 3.85 8.01 -2.39 -0.02 3.83 16 12 O -0.56 -22.07 12.94 -148.98 -1.93 -24.00 16 13 C -0.10 -3.65 4.98 -19.84 -0.10 -3.75 16 14 C -0.11 -3.34 9.31 22.30 0.21 -3.13 16 15 C -0.11 -3.11 10.01 22.35 0.22 -2.88 16 16 C 0.05 1.50 5.73 22.45 0.13 1.62 16 17 C 0.06 1.92 5.73 22.45 0.13 2.05 16 18 C -0.12 -4.32 9.62 22.35 0.22 -4.10 16 19 O -0.34 -10.38 10.16 -84.23 -0.86 -11.23 16 20 C 0.05 0.92 6.51 71.67 0.47 1.39 16 21 C -0.18 -2.75 5.92 29.98 0.18 -2.57 16 22 C 0.05 0.85 6.51 71.67 0.47 1.32 16 23 O -0.34 -9.19 10.16 -84.10 -0.85 -10.04 16 24 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 25 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 26 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.38 12.34 7.49 -74.05 -0.55 11.79 16 28 H 0.15 3.93 6.77 -2.91 -0.02 3.91 16 29 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 30 H 0.13 4.50 8.04 -2.91 -0.02 4.48 16 31 H 0.06 1.13 7.93 -2.38 -0.02 1.11 16 32 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.02 7.93 -2.39 -0.02 1.00 16 36 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -70.97 302.98 2.04 -68.93 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.53 Total: 18.15 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 2.84 Total: -32.04 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.28 Total: -56.47 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -3.64 Total: -45.27 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.97 2.04 -68.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041260440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.543 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds