Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35663 * 116.99961 * 2 1 4 4 C 1.39281 * 119.83490 * 0.02562 * 3 2 1 5 5 C 1.36424 * 120.41048 * 179.74023 * 4 3 2 6 6 C 1.40175 * 120.05491 * 0.51697 * 5 4 3 7 7 C 1.46489 * 120.16395 * 179.74104 * 6 5 4 8 8 O 1.21342 * 119.99843 * 179.72736 * 7 6 5 9 9 C 1.50698 * 120.00166 * 359.71983 * 7 6 5 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47046 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46873 * 120.00118 * 15 13 11 18 18 H 1.48497 * 109.47510 * 240.00153 * 15 13 11 19 19 C 1.40646 * 119.66932 * 359.46554 * 6 5 4 20 20 O 1.35602 * 120.20427 * 180.29956 * 19 6 5 21 21 C 1.42896 * 117.00510 * 180.02562 * 20 19 6 22 22 C 1.38427 * 119.59907 * 0.27645 * 19 6 5 23 23 H 1.09005 * 109.47253 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47158 * 299.99862 * 1 2 3 25 25 H 1.09001 * 109.47294 * 59.99932 * 1 2 3 26 26 H 1.08001 * 119.79399 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.97288 * 180.27713 * 5 4 3 28 28 H 1.09001 * 109.46665 * 60.00469 * 9 7 6 29 29 H 1.08993 * 109.47304 * 300.00025 * 9 7 6 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.47233 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.46415 * 299.99708 * 21 20 19 35 35 H 1.08997 * 109.46985 * 59.99333 * 21 20 19 36 36 H 1.07995 * 120.03650 * 179.97438 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2829 2.3747 0.0005 5 6 1.8900 3.5964 0.0059 6 6 3.2890 3.6852 -0.0001 7 6 3.9433 4.9958 -0.0001 8 8 5.1545 5.0692 -0.0003 9 6 3.1123 6.2529 -0.0001 10 6 4.0344 7.4739 -0.0007 11 6 3.2034 8.7311 -0.0001 12 1 2.1253 8.6657 0.0012 13 6 3.8193 9.9646 0.0000 14 7 5.1320 10.0441 -0.0009 15 14 2.7892 11.5229 0.0016 16 1 1.3482 11.1637 0.0032 17 1 3.1012 12.3213 1.2143 18 1 3.0991 12.3224 -1.2108 19 6 4.0612 2.5097 -0.0002 20 8 5.4152 2.5830 0.0002 21 6 6.1319 1.3468 -0.0005 22 6 3.4306 1.2774 -0.0002 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.2048 2.3112 0.0005 27 1 1.2923 4.4959 0.0108 28 1 2.4834 6.2726 0.8900 29 1 2.4833 6.2727 -0.8900 30 1 4.6638 7.4543 0.8890 31 1 4.6630 7.4540 -0.8910 32 1 5.5653 10.9119 -0.0013 33 1 7.2032 1.5478 -0.0005 34 1 5.8693 0.7742 0.8891 35 1 5.8698 0.7753 -0.8908 36 1 4.0167 0.3703 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041260444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = -92.648741 kcal Electronic energy + Delta-G solvation = -19306.266124 eV Core-core repulsion = 16142.449188 eV Total energy + Delta-G solvation = -3163.816936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71911 -39.26148 -38.20275 -36.38544 -33.40475 -31.52372 -30.54714 -30.13068 -27.74012 -27.36369 -25.63728 -23.44702 -22.22930 -21.15140 -19.02533 -18.76680 -16.90609 -16.64453 -16.32397 -16.15117 -15.64730 -15.64013 -14.88959 -14.44808 -14.38112 -14.21710 -13.84889 -13.04376 -12.80100 -12.74051 -12.49240 -12.12353 -12.05513 -11.65634 -11.59998 -11.18114 -10.96172 -10.90576 -10.74450 -10.53246 -9.87521 -9.60857 -9.06524 -8.74482 -8.67220 -8.28354 -8.11166 -5.91529 -3.95359 0.90561 1.33950 2.89479 2.91157 3.28693 3.35429 3.42359 3.45765 3.89307 4.47483 4.57262 4.65557 4.83160 4.85876 4.85923 4.95016 5.09444 5.15194 5.21833 5.36269 5.43391 5.47363 5.50700 5.73498 6.07601 6.23140 6.26492 6.34327 6.42108 6.49771 7.05157 7.08461 7.37796 7.79378 7.92503 8.11950 8.34418 8.51970 9.13156 9.67948 11.19571 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.026109 B = 0.004204 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.163925 B = 6659.139551 C = 7700.251119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.186 3.814 4 C -0.258 4.258 5 C 0.005 3.995 6 C -0.230 4.230 7 C 0.387 3.613 8 O -0.437 6.437 9 C -0.154 4.154 10 C 0.031 3.969 11 C -0.524 4.524 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.891 5.891 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.215 3.785 20 O -0.276 6.276 21 C 0.020 3.980 22 C -0.263 4.263 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.133 0.867 27 H 0.145 0.855 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.260 0.740 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 -21.943 0.008 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.140 3.860 4 C -0.277 4.277 5 C -0.013 4.013 6 C -0.232 4.232 7 C 0.264 3.736 8 O -0.311 6.311 9 C -0.192 4.192 10 C -0.006 4.006 11 C -0.562 4.562 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C 0.166 3.834 20 O -0.186 6.186 21 C -0.075 4.075 22 C -0.282 4.282 23 H 0.118 0.882 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.151 0.849 27 H 0.163 0.837 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.253 -21.808 0.009 22.983 hybrid contribution -0.912 0.617 0.001 1.101 sum -8.165 -21.191 0.011 22.710 Atomic orbital electron populations 1.23120 0.77904 1.04004 1.01887 1.85996 1.21844 1.27158 1.87840 1.18914 0.91482 0.84158 0.91454 1.20853 1.00306 0.92054 1.14480 1.20926 0.92577 0.97895 0.89903 1.20336 0.93546 0.93999 1.15312 1.22567 0.89768 0.89164 0.72150 1.90543 1.16320 1.89265 1.34990 1.22124 1.00350 0.94373 1.02318 1.18942 0.93980 0.89316 0.98398 1.21281 0.92979 0.91045 1.50907 0.92559 1.25036 0.94863 0.99162 0.95419 1.70011 1.08059 1.24364 1.50524 0.86552 0.80460 0.83508 0.77540 1.19757 1.21064 1.21060 1.19008 0.83084 0.92172 0.89107 1.86396 1.14349 1.31672 1.86227 1.23178 0.97448 0.85658 1.01204 1.20310 0.92603 0.97448 1.17876 0.88198 0.92225 0.92231 0.84913 0.83684 0.89996 0.89994 0.95964 0.95958 0.93072 0.87872 0.92560 0.92565 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.80 101.05 0.99 1.15 16 2 O -0.32 -3.32 10.48 -18.69 -0.20 -3.51 16 3 C 0.19 2.26 6.69 -39.01 -0.26 2.00 16 4 C -0.26 -2.95 8.96 -39.85 -0.36 -3.30 16 5 C 0.01 0.07 9.41 -39.51 -0.37 -0.30 16 6 C -0.23 -3.86 5.88 -104.94 -0.62 -4.48 16 7 C 0.39 7.99 7.10 -30.99 -0.22 7.77 16 8 O -0.44 -10.64 14.79 -16.43 -0.24 -10.89 16 9 C -0.15 -3.25 4.24 -27.88 -0.12 -3.37 16 10 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 11 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 12 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 C 0.21 3.39 6.70 -38.60 -0.26 3.14 16 20 O -0.28 -4.55 8.57 -40.44 -0.35 -4.90 16 21 C 0.02 0.22 9.81 101.05 0.99 1.21 16 22 C -0.26 -3.43 8.97 -39.33 -0.35 -3.78 16 23 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.33 7.64 -51.93 -0.40 -0.06 16 25 H 0.06 0.33 7.65 -51.93 -0.40 -0.06 16 26 H 0.13 1.12 6.26 -52.49 -0.33 0.79 16 27 H 0.15 1.68 7.03 -52.49 -0.37 1.31 16 28 H 0.08 1.57 8.07 -51.93 -0.42 1.15 16 29 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 30 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 35 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 36 H 0.14 1.51 6.30 -52.49 -0.33 1.18 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -35.81 309.26 -6.20 -42.01 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.68 Total: -4.07 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.10 Total: -13.09 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.74 Total: -27.09 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.79 Total: -19.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.81 -6.20 -42.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041260444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.643 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds