Wall clock time and date at job start Mon Mar 30 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35663 * 116.99961 * 2 1 4 4 C 1.39281 * 119.83490 * 0.02562 * 3 2 1 5 5 C 1.36424 * 120.41048 * 179.74023 * 4 3 2 6 6 C 1.40175 * 120.05491 * 0.51697 * 5 4 3 7 7 C 1.46489 * 120.16395 * 179.74104 * 6 5 4 8 8 O 1.21342 * 119.99843 * 179.72736 * 7 6 5 9 9 C 1.50698 * 120.00166 * 359.71983 * 7 6 5 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47046 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46873 * 120.00118 * 15 13 11 18 18 H 1.48497 * 109.47510 * 240.00153 * 15 13 11 19 19 C 1.40646 * 119.66932 * 359.46554 * 6 5 4 20 20 O 1.35602 * 120.20427 * 180.29956 * 19 6 5 21 21 C 1.42896 * 117.00510 * 180.02562 * 20 19 6 22 22 C 1.38427 * 119.59907 * 0.27645 * 19 6 5 23 23 H 1.09005 * 109.47253 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47158 * 299.99862 * 1 2 3 25 25 H 1.09001 * 109.47294 * 59.99932 * 1 2 3 26 26 H 1.08001 * 119.79399 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.97288 * 180.27713 * 5 4 3 28 28 H 1.09001 * 109.46665 * 60.00469 * 9 7 6 29 29 H 1.08993 * 109.47304 * 300.00025 * 9 7 6 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.47233 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.46415 * 299.99708 * 21 20 19 35 35 H 1.08997 * 109.46985 * 59.99333 * 21 20 19 36 36 H 1.07995 * 120.03650 * 179.97438 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2829 2.3747 0.0005 5 6 1.8900 3.5964 0.0059 6 6 3.2890 3.6852 -0.0001 7 6 3.9433 4.9958 -0.0001 8 8 5.1545 5.0692 -0.0003 9 6 3.1123 6.2529 -0.0001 10 6 4.0344 7.4739 -0.0007 11 6 3.2034 8.7311 -0.0001 12 1 2.1253 8.6657 0.0012 13 6 3.8193 9.9646 0.0000 14 7 5.1320 10.0441 -0.0009 15 14 2.7892 11.5229 0.0016 16 1 1.3482 11.1637 0.0032 17 1 3.1012 12.3213 1.2143 18 1 3.0991 12.3224 -1.2108 19 6 4.0612 2.5097 -0.0002 20 8 5.4152 2.5830 0.0002 21 6 6.1319 1.3468 -0.0005 22 6 3.4306 1.2774 -0.0002 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.2048 2.3112 0.0005 27 1 1.2923 4.4959 0.0108 28 1 2.4834 6.2726 0.8900 29 1 2.4833 6.2727 -0.8900 30 1 4.6638 7.4543 0.8890 31 1 4.6630 7.4540 -0.8910 32 1 5.5653 10.9119 -0.0013 33 1 7.2032 1.5478 -0.0005 34 1 5.8693 0.7742 0.8891 35 1 5.8698 0.7753 -0.8908 36 1 4.0167 0.3703 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041260444.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:35 Heat of formation + Delta-G solvation = -116.031787 kcal Electronic energy + Delta-G solvation = -19307.280089 eV Core-core repulsion = 16142.449188 eV Total energy + Delta-G solvation = -3164.830901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.76015 -40.28319 -39.63759 -37.42348 -35.55148 -33.19302 -31.93088 -31.19143 -28.73253 -28.15795 -27.39698 -24.81722 -23.55622 -22.56000 -20.51639 -19.73453 -18.64391 -17.86321 -17.34022 -17.16151 -17.03288 -16.49675 -16.44388 -16.05844 -15.75051 -15.61419 -15.10937 -14.25686 -14.14147 -13.99142 -13.76561 -13.42785 -13.26260 -13.06187 -12.82709 -12.53672 -12.43814 -12.41309 -11.94499 -11.89013 -11.64027 -11.60050 -11.26286 -10.56446 -10.33225 -9.71881 -9.17868 -8.16498 -6.30647 -0.23653 0.35066 1.42772 1.44673 1.55908 1.58046 2.09379 2.38610 2.43339 2.74136 3.16235 3.27680 3.68453 3.99914 4.07781 4.15703 4.32584 4.36100 4.42503 4.45189 4.45782 4.52104 4.61014 4.63418 4.67618 4.80908 5.00719 5.12685 5.24676 5.35876 5.46783 5.51264 5.64902 5.86244 6.19717 6.22602 6.38749 6.82743 6.92433 7.39512 8.96586 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.026109 B = 0.004204 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.163925 B = 6659.139551 C = 7700.251119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.323 6.323 3 C 0.198 3.802 4 C -0.249 4.249 5 C 0.012 3.988 6 C -0.267 4.267 7 C 0.388 3.612 8 O -0.495 6.495 9 C -0.144 4.144 10 C 0.036 3.964 11 C -0.540 4.540 12 H 0.078 0.922 13 C -0.010 4.010 14 N -0.940 5.940 15 Si 0.976 3.024 16 H -0.251 1.251 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.203 3.797 20 O -0.316 6.316 21 C 0.012 3.988 22 C -0.268 4.268 23 H 0.123 0.877 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.171 0.829 27 H 0.164 0.836 28 H 0.107 0.893 29 H 0.107 0.893 30 H -0.021 1.021 31 H -0.020 1.020 32 H 0.262 0.738 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 -23.362 0.012 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.235 6.235 3 C 0.150 3.850 4 C -0.267 4.267 5 C -0.006 4.006 6 C -0.269 4.269 7 C 0.269 3.731 8 O -0.374 6.374 9 C -0.181 4.181 10 C -0.001 4.001 11 C -0.578 4.578 12 H 0.096 0.904 13 C -0.207 4.207 14 N -0.580 5.580 15 Si 0.799 3.201 16 H -0.174 1.174 17 H -0.207 1.207 18 H -0.206 1.206 19 C 0.155 3.845 20 O -0.228 6.228 21 C -0.082 4.082 22 C -0.287 4.287 23 H 0.141 0.859 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.188 0.812 27 H 0.182 0.818 28 H 0.125 0.875 29 H 0.125 0.875 30 H -0.002 1.002 31 H -0.002 1.002 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.101 -23.266 0.013 25.778 hybrid contribution 0.218 0.865 0.000 0.892 sum -10.883 -22.401 0.013 24.905 Atomic orbital electron populations 1.23518 0.75449 1.06109 1.03080 1.86012 1.24313 1.26157 1.87022 1.19072 0.91334 0.85179 0.89394 1.21194 1.02081 0.90787 1.12673 1.21131 0.90985 0.99648 0.88825 1.20077 0.95139 0.92088 1.19573 1.22822 0.89007 0.90861 0.70409 1.90519 1.18411 1.90078 1.38358 1.21988 0.99483 0.92014 1.04641 1.18757 0.94193 0.92812 0.94381 1.21767 0.94067 0.91541 1.50440 0.90431 1.26183 0.96152 1.03661 0.94673 1.70197 1.10558 1.25537 1.51713 0.85245 0.79350 0.77953 0.77515 1.17415 1.20653 1.20641 1.19194 0.83010 0.92924 0.89415 1.86347 1.15264 1.34764 1.86401 1.23465 0.97502 0.84394 1.02854 1.20440 0.93550 0.96929 1.17816 0.85900 0.90966 0.90975 0.81212 0.81849 0.87464 0.87475 1.00207 1.00201 0.92910 0.87077 0.90825 0.90834 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.80 113.37 1.11 1.21 16 2 O -0.32 -5.54 10.48 -89.79 -0.94 -6.48 16 3 C 0.20 4.17 6.69 22.64 0.15 4.32 16 4 C -0.25 -4.74 8.96 22.10 0.20 -4.55 16 5 C 0.01 0.30 9.41 22.32 0.21 0.51 16 6 C -0.27 -8.98 5.88 -20.07 -0.12 -9.10 16 7 C 0.39 16.77 7.10 27.84 0.20 16.96 16 8 O -0.50 -26.09 14.79 17.75 0.26 -25.82 16 9 C -0.14 -6.17 4.24 29.85 0.13 -6.04 16 10 C 0.04 2.07 4.26 29.85 0.13 2.20 16 11 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 12 H 0.08 4.10 7.74 -2.91 -0.02 4.08 16 13 C -0.01 -0.58 5.46 84.65 0.46 -0.11 16 14 N -0.94 -60.96 13.29 21.45 0.28 -60.68 16 15 Si 0.98 45.01 29.54 68.60 2.03 47.03 16 16 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 C 0.20 6.45 6.70 22.90 0.15 6.61 16 20 O -0.32 -10.90 8.57 -68.14 -0.58 -11.49 16 21 C 0.01 0.25 9.81 113.37 1.11 1.37 16 22 C -0.27 -6.55 8.97 22.44 0.20 -6.35 16 23 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 24 H 0.07 0.45 7.64 -2.39 -0.02 0.43 16 25 H 0.07 0.45 7.65 -2.39 -0.02 0.43 16 26 H 0.17 1.94 6.26 -2.91 -0.02 1.92 16 27 H 0.16 3.25 7.03 -2.91 -0.02 3.23 16 28 H 0.11 4.01 8.07 -2.39 -0.02 3.99 16 29 H 0.11 4.01 8.09 -2.39 -0.02 3.99 16 30 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 31 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 32 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 1.27 7.66 -2.39 -0.02 1.26 16 35 H 0.07 1.27 7.66 -2.39 -0.02 1.26 16 36 H 0.16 3.10 6.30 -2.91 -0.02 3.08 16 Total: -1.00 -83.31 309.26 6.30 -77.01 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.08 Total: 4.71 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 4.17 Total: -24.29 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.28 Total: -60.68 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -1.26 Total: -43.79 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -83.31 6.30 -77.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041260444.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.019 kcal (2) G-P(sol) polarization free energy of solvation -83.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds