Wall clock time and date at job start Mon Mar 30 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38559 * 119.80052 * 2 1 4 4 C 1.37760 * 120.31256 * 180.02562 * 3 2 1 5 5 C 1.39771 * 119.90239 * 359.97438 * 4 3 2 6 6 C 1.47401 * 120.20310 * 179.97438 * 5 4 3 7 7 O 1.21499 * 120.00266 * 180.02562 * 6 5 4 8 8 O 1.34754 * 119.99473 * 0.02562 * 6 5 4 9 9 C 1.40202 * 119.60151 * 0.02562 * 5 4 3 10 10 O 1.35644 * 120.15082 * 180.02562 * 9 5 4 11 11 C 1.42903 * 116.99549 * 179.97438 * 10 9 5 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47116 * 59.99479 * 18 16 14 20 20 H 1.48490 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46756 * 300.00079 * 18 16 14 22 22 C 1.38060 * 119.79876 * 180.27233 * 2 1 3 23 23 H 1.08997 * 109.47310 * 89.99963 * 1 2 3 24 24 H 1.09001 * 109.46844 * 210.00156 * 1 2 3 25 25 H 1.09003 * 109.46987 * 330.00052 * 1 2 3 26 26 H 1.08005 * 119.84698 * 359.97425 * 3 2 1 27 27 H 1.08000 * 120.05572 * 179.97438 * 4 3 2 28 28 H 0.96700 * 116.99749 * 180.02562 * 8 6 5 29 29 H 1.09002 * 109.47382 * 59.99849 * 11 10 9 30 30 H 1.09001 * 109.46938 * 299.99835 * 11 10 9 31 31 H 1.09001 * 109.47194 * 299.99575 * 12 11 10 32 32 H 1.08992 * 109.47399 * 59.99748 * 12 11 10 33 33 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 34 34 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 35 35 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 36 36 H 1.08006 * 119.95173 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2024 0.0000 4 6 3.5732 1.2147 -0.0005 5 6 4.2808 0.0093 -0.0005 6 6 5.7548 0.0147 -0.0017 7 8 6.3662 -1.0352 -0.0021 8 8 6.4241 1.1843 -0.0022 9 6 3.5801 -1.2051 -0.0005 10 8 4.2555 -2.3814 0.0000 11 6 3.4743 -3.5780 0.0005 12 6 4.4035 -4.7935 0.0017 13 6 3.5671 -6.0747 0.0016 14 6 4.4821 -7.2720 0.0022 15 1 5.5532 -7.1331 0.0021 16 6 3.9522 -8.5448 0.0027 17 7 2.6479 -8.7140 0.0033 18 14 5.0865 -10.0290 0.0041 19 1 5.9428 -9.9964 1.2169 20 1 4.2747 -11.2724 0.0039 21 1 5.9437 -9.9979 -1.2081 22 6 2.1931 -1.1980 -0.0057 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6498 2.1344 -0.0004 27 1 4.1057 2.1543 -0.0009 28 1 7.3900 1.1373 -0.0033 29 1 2.8454 -3.6017 -0.8894 30 1 2.8455 -3.6009 0.8905 31 1 5.0326 -4.7708 -0.8881 32 1 5.0320 -4.7696 0.8918 33 1 2.9376 -6.0977 0.8912 34 1 2.9388 -6.0984 -0.8888 35 1 2.2750 -9.6095 0.0041 36 1 1.6490 -2.1310 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042220317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:53 Heat of formation + Delta-G solvation = -125.799855 kcal Electronic energy + Delta-G solvation = -19093.749338 eV Core-core repulsion = 15928.494862 eV Total energy + Delta-G solvation = -3165.254476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67337 -39.32906 -37.70816 -35.91438 -34.08198 -33.00129 -31.69843 -30.03718 -28.01391 -26.95312 -23.84809 -23.29198 -21.99206 -21.15466 -20.05688 -18.16729 -17.65219 -16.88461 -16.22053 -16.01805 -15.69798 -15.33226 -14.63104 -14.52224 -14.34728 -13.94325 -13.51860 -13.18339 -13.14952 -12.45795 -12.21810 -11.98951 -11.94769 -11.59790 -11.42431 -11.41834 -10.99966 -10.63113 -10.61311 -10.59052 -10.28409 -9.74645 -9.51865 -9.16695 -9.05213 -8.37380 -8.27183 -6.03013 -4.05244 0.63962 1.31494 2.59270 3.04376 3.32979 3.34190 3.37795 3.42438 3.65657 4.45540 4.54219 4.62293 4.93623 4.95218 5.23768 5.32359 5.33245 5.38142 5.48477 5.50126 5.50544 5.64034 5.84278 5.96769 6.04370 6.15331 6.35166 6.52365 6.53072 6.57788 6.74714 7.00769 7.52686 7.61321 7.71874 7.95780 8.01316 8.38095 9.00680 9.59018 11.08534 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.003988 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.104124 B = 7019.180763 C = 8195.232843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.008 4.008 3 C -0.185 4.185 4 C -0.021 4.021 5 C -0.182 4.182 6 C 0.521 3.479 7 O -0.489 6.489 8 O -0.522 6.522 9 C 0.208 3.792 10 O -0.282 6.282 11 C 0.052 3.948 12 C -0.107 4.107 13 C 0.026 3.974 14 C -0.521 4.521 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.228 4.228 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.129 0.871 27 H 0.141 0.859 28 H 0.411 0.589 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.262 0.738 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 22.399 -0.042 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.008 4.008 3 C -0.203 4.203 4 C -0.039 4.039 5 C -0.184 4.184 6 C 0.365 3.635 7 O -0.376 6.376 8 O -0.334 6.334 9 C 0.158 3.842 10 O -0.192 6.192 11 C -0.022 4.022 12 C -0.145 4.145 13 C -0.011 4.011 14 C -0.559 4.559 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.246 4.246 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.147 0.853 27 H 0.158 0.842 28 H 0.269 0.731 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.490 21.897 -0.040 22.038 hybrid contribution 0.942 -0.985 -0.005 1.363 sum -1.548 20.912 -0.045 20.969 Atomic orbital electron populations 1.20931 0.90591 1.03396 1.02984 1.19994 0.96385 0.92412 0.92013 1.20851 0.93798 0.97701 1.07957 1.21226 0.94014 0.96512 0.92149 1.18335 0.89306 0.92219 1.18534 1.20597 0.88538 0.81043 0.73312 1.90993 1.69453 1.32583 1.44616 1.84529 1.26605 1.35579 1.86735 1.19115 0.90284 0.86054 0.88710 1.86377 1.35864 1.12007 1.84997 1.23371 0.95464 0.82391 1.00992 1.21712 0.98391 0.92048 1.02311 1.19045 0.95068 0.89575 0.97453 1.21159 0.93167 0.90732 1.50849 0.92462 1.25012 0.95077 0.99121 0.95171 1.69952 1.10535 1.22366 1.50733 0.86605 0.80617 0.81763 0.78738 1.20157 1.21260 1.20163 1.21229 0.92439 0.99713 1.11265 0.90336 0.90859 0.90996 0.85294 0.84155 0.73132 0.92036 0.92039 0.92047 0.92041 0.96331 0.96335 0.92889 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.00 36.01 0.36 -0.58 16 2 C -0.01 -0.08 5.88 -104.57 -0.62 -0.70 16 3 C -0.18 -1.79 9.67 -39.64 -0.38 -2.17 16 4 C -0.02 -0.23 9.61 -39.18 -0.38 -0.60 16 5 C -0.18 -2.59 5.89 -104.86 -0.62 -3.20 16 6 C 0.52 7.68 8.26 34.46 0.28 7.97 16 7 O -0.49 -9.17 15.95 -26.59 -0.42 -9.59 16 8 O -0.52 -5.38 12.68 -40.64 -0.52 -5.90 16 9 C 0.21 3.27 6.70 -38.67 -0.26 3.01 16 10 O -0.28 -5.27 8.21 -40.51 -0.33 -5.60 16 11 C 0.05 0.95 4.74 37.16 0.18 1.12 16 12 C -0.11 -2.34 5.52 -26.73 -0.15 -2.49 16 13 C 0.03 0.66 4.97 -27.88 -0.14 0.53 16 14 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 15 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 18 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.23 -3.00 8.67 -39.48 -0.34 -3.35 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 25 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 26 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 27 H 0.14 1.19 7.61 -52.49 -0.40 0.79 16 28 H 0.41 2.46 9.11 45.56 0.42 2.88 16 29 H 0.06 1.04 7.65 -51.93 -0.40 0.64 16 30 H 0.06 1.04 7.67 -51.93 -0.40 0.64 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.14 1.77 6.30 -52.48 -0.33 1.44 16 LS Contribution 314.80 15.07 4.74 4.74 Total: -1.00 -34.05 314.80 -7.31 -41.36 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.03 Total: -1.56 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.47 Total: -14.18 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.27 Total: -21.09 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.05 -7.31 -41.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042220317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.436 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds