Wall clock time and date at job start Mon Mar 30 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38559 * 119.80052 * 2 1 4 4 C 1.37760 * 120.31256 * 180.02562 * 3 2 1 5 5 C 1.39771 * 119.90239 * 359.97438 * 4 3 2 6 6 C 1.47401 * 120.20310 * 179.97438 * 5 4 3 7 7 O 1.21499 * 120.00266 * 180.02562 * 6 5 4 8 8 O 1.34754 * 119.99473 * 0.02562 * 6 5 4 9 9 C 1.40202 * 119.60151 * 0.02562 * 5 4 3 10 10 O 1.35644 * 120.15082 * 180.02562 * 9 5 4 11 11 C 1.42903 * 116.99549 * 179.97438 * 10 9 5 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47116 * 59.99479 * 18 16 14 20 20 H 1.48490 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46756 * 300.00079 * 18 16 14 22 22 C 1.38060 * 119.79876 * 180.27233 * 2 1 3 23 23 H 1.08997 * 109.47310 * 89.99963 * 1 2 3 24 24 H 1.09001 * 109.46844 * 210.00156 * 1 2 3 25 25 H 1.09003 * 109.46987 * 330.00052 * 1 2 3 26 26 H 1.08005 * 119.84698 * 359.97425 * 3 2 1 27 27 H 1.08000 * 120.05572 * 179.97438 * 4 3 2 28 28 H 0.96700 * 116.99749 * 180.02562 * 8 6 5 29 29 H 1.09002 * 109.47382 * 59.99849 * 11 10 9 30 30 H 1.09001 * 109.46938 * 299.99835 * 11 10 9 31 31 H 1.09001 * 109.47194 * 299.99575 * 12 11 10 32 32 H 1.08992 * 109.47399 * 59.99748 * 12 11 10 33 33 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 34 34 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 35 35 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 36 36 H 1.08006 * 119.95173 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2024 0.0000 4 6 3.5732 1.2147 -0.0005 5 6 4.2808 0.0093 -0.0005 6 6 5.7548 0.0147 -0.0017 7 8 6.3662 -1.0352 -0.0021 8 8 6.4241 1.1843 -0.0022 9 6 3.5801 -1.2051 -0.0005 10 8 4.2555 -2.3814 0.0000 11 6 3.4743 -3.5780 0.0005 12 6 4.4035 -4.7935 0.0017 13 6 3.5671 -6.0747 0.0016 14 6 4.4821 -7.2720 0.0022 15 1 5.5532 -7.1331 0.0021 16 6 3.9522 -8.5448 0.0027 17 7 2.6479 -8.7140 0.0033 18 14 5.0865 -10.0290 0.0041 19 1 5.9428 -9.9964 1.2169 20 1 4.2747 -11.2724 0.0039 21 1 5.9437 -9.9979 -1.2081 22 6 2.1931 -1.1980 -0.0057 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.6498 2.1344 -0.0004 27 1 4.1057 2.1543 -0.0009 28 1 7.3900 1.1373 -0.0033 29 1 2.8454 -3.6017 -0.8894 30 1 2.8455 -3.6009 0.8905 31 1 5.0326 -4.7708 -0.8881 32 1 5.0320 -4.7696 0.8918 33 1 2.9376 -6.0977 0.8912 34 1 2.9388 -6.0984 -0.8888 35 1 2.2750 -9.6095 0.0041 36 1 1.6490 -2.1310 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042220317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:53 Heat of formation + Delta-G solvation = -146.956790 kcal Electronic energy + Delta-G solvation = -19094.666772 eV Core-core repulsion = 15928.494862 eV Total energy + Delta-G solvation = -3166.171909 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.74569 -40.44578 -38.80400 -36.97327 -36.03056 -34.08358 -33.49137 -31.09892 -29.08243 -28.55517 -25.56051 -24.23249 -23.31169 -22.36315 -21.59537 -19.21513 -18.84259 -18.49449 -17.74343 -17.36511 -16.79577 -16.52366 -16.51275 -15.55970 -15.25543 -15.12007 -14.83184 -14.37510 -14.19322 -14.12760 -13.69983 -13.19664 -13.09170 -12.78321 -12.77560 -12.54744 -12.50250 -12.36565 -12.11471 -12.10484 -11.58926 -11.51012 -11.45895 -11.28939 -10.58470 -9.96498 -9.30824 -8.24162 -6.35080 -0.32418 0.36794 1.39020 1.42106 1.50208 1.55767 2.06499 2.13286 2.40760 2.70442 3.09353 3.66662 3.76562 3.97183 4.00806 4.09093 4.13703 4.34605 4.39835 4.52048 4.71459 4.75951 4.78300 4.84719 4.88185 5.04021 5.16862 5.21602 5.27471 5.43813 5.51550 5.61751 5.62822 5.76265 5.77387 6.17195 6.33538 6.78763 7.04791 7.33898 8.87629 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023190 B = 0.003988 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.104124 B = 7019.180763 C = 8195.232843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.004 4.004 3 C -0.171 4.171 4 C -0.012 4.012 5 C -0.205 4.205 6 C 0.525 3.475 7 O -0.543 6.543 8 O -0.503 6.503 9 C 0.171 3.829 10 O -0.310 6.310 11 C 0.066 3.934 12 C -0.095 4.095 13 C 0.032 3.968 14 C -0.550 4.550 15 H 0.056 0.944 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.241 4.241 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.170 0.830 27 H 0.169 0.831 28 H 0.430 0.570 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.003 0.997 34 H 0.003 0.997 35 H 0.266 0.734 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 24.512 -0.047 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.004 4.004 3 C -0.189 4.189 4 C -0.030 4.030 5 C -0.207 4.207 6 C 0.371 3.629 7 O -0.434 6.434 8 O -0.317 6.317 9 C 0.124 3.876 10 O -0.222 6.222 11 C -0.009 4.009 12 C -0.133 4.133 13 C -0.005 4.005 14 C -0.588 4.588 15 H 0.074 0.926 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.193 1.193 22 C -0.259 4.259 23 H 0.109 0.891 24 H 0.089 0.911 25 H 0.115 0.885 26 H 0.187 0.813 27 H 0.186 0.814 28 H 0.291 0.709 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.075 0.925 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.164 24.067 -0.045 24.274 hybrid contribution 1.094 -1.439 -0.005 1.808 sum -2.070 22.628 -0.050 22.722 Atomic orbital electron populations 1.21024 0.88208 1.04549 1.04051 1.20418 0.98101 0.91775 0.90134 1.21343 0.93444 0.98842 1.05262 1.21576 0.94701 0.96092 0.90621 1.18617 0.89325 0.92964 1.19774 1.20817 0.89037 0.81112 0.71957 1.90970 1.70517 1.34529 1.47388 1.84473 1.28334 1.33202 1.85734 1.19490 0.91513 0.85351 0.91281 1.86291 1.36662 1.12820 1.86401 1.23004 0.94293 0.81706 1.01877 1.21414 0.98161 0.92355 1.01389 1.18888 0.94753 0.91047 0.95792 1.21582 0.93580 0.92225 1.51405 0.92605 1.25922 0.96732 1.02273 0.94410 1.70065 1.12290 1.23352 1.51159 0.85496 0.78595 0.77814 0.79131 1.19326 1.20302 1.19335 1.21350 0.91546 1.01014 1.12006 0.89117 0.91094 0.88543 0.81276 0.81393 0.70869 0.91152 0.91168 0.92918 0.92911 0.97890 0.97891 0.92522 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 10.00 71.24 0.71 -0.76 16 2 C 0.00 -0.07 5.88 -19.83 -0.12 -0.19 16 3 C -0.17 -2.63 9.67 22.23 0.21 -2.42 16 4 C -0.01 -0.22 9.61 22.53 0.22 -0.01 16 5 C -0.20 -5.71 5.89 -20.02 -0.12 -5.82 16 6 C 0.52 15.48 8.26 70.24 0.58 16.06 16 7 O -0.54 -21.17 15.95 26.84 0.43 -20.74 16 8 O -0.50 -9.59 12.68 -56.65 -0.72 -10.31 16 9 C 0.17 5.49 6.70 22.86 0.15 5.64 16 10 O -0.31 -12.14 8.21 -68.65 -0.56 -12.70 16 11 C 0.07 2.50 4.74 71.98 0.34 2.84 16 12 C -0.10 -4.39 5.52 30.59 0.17 -4.22 16 13 C 0.03 1.75 4.97 29.85 0.15 1.90 16 14 C -0.55 -32.43 9.11 25.60 0.23 -32.20 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.00 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 18 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 C -0.24 -6.24 8.67 22.34 0.19 -6.04 16 23 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 25 H 0.10 0.72 8.08 -2.39 -0.02 0.70 16 26 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 27 H 0.17 2.15 7.61 -2.91 -0.02 2.13 16 28 H 0.43 4.52 9.11 -74.06 -0.67 3.85 16 29 H 0.07 2.49 7.65 -2.39 -0.02 2.47 16 30 H 0.07 2.49 7.67 -2.39 -0.02 2.47 16 31 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.14 3.52 6.30 -2.91 -0.02 3.50 16 Total: -1.00 -76.07 314.80 5.06 -71.00 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.42 Total: 6.31 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 3.19 Total: -24.47 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.28 Total: -56.21 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.85 Total: -43.75 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.07 5.06 -71.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042220317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.954 kcal (2) G-P(sol) polarization free energy of solvation -76.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds