Wall clock time and date at job start Mon Mar 30 2020 06:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38566 * 119.84401 * 2 1 4 4 C 1.38050 * 120.40283 * 179.74732 * 3 2 1 5 5 C 1.38710 * 120.09075 * 0.55019 * 4 3 2 6 6 O 1.35638 * 120.15591 * 179.71802 * 5 4 3 7 7 C 1.42895 * 116.99918 * 359.73750 * 6 5 4 8 8 C 1.53006 * 109.47036 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47055 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37887 * 120.00079 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99685 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00129 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.46672 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46691 * 119.99941 * 14 12 10 17 17 H 1.48497 * 109.47025 * 240.00323 * 14 12 10 18 18 C 1.40193 * 119.68654 * 359.45654 * 5 4 3 19 19 C 1.47405 * 120.19549 * 180.29000 * 18 5 4 20 20 O 1.21508 * 120.00088 * 359.97438 * 19 18 5 21 21 O 1.34754 * 120.00040 * 179.97438 * 19 18 5 22 22 C 1.37767 * 119.84973 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.46641 * 269.97476 * 1 2 3 24 24 H 1.08990 * 109.47210 * 29.97846 * 1 2 3 25 25 H 1.09005 * 109.46803 * 149.97840 * 1 2 3 26 26 H 1.07999 * 119.79803 * 0.02562 * 3 2 1 27 27 H 1.08008 * 119.95700 * 180.28225 * 4 3 2 28 28 H 1.09001 * 109.47626 * 59.99862 * 7 6 5 29 29 H 1.09001 * 109.47255 * 299.99603 * 7 6 5 30 30 H 1.09001 * 109.47002 * 299.99477 * 8 7 6 31 31 H 1.08993 * 109.46955 * 59.99914 * 8 7 6 32 32 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 33 33 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 34 34 H 0.96999 * 119.99910 * 179.97438 * 13 12 10 35 35 H 0.96695 * 117.00239 * 180.02562 * 21 19 18 36 36 H 1.08001 * 120.04534 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2019 0.0000 4 6 3.5770 1.2154 0.0053 5 6 4.2842 0.0221 -0.0009 6 8 5.6405 0.0338 -0.0016 7 6 6.2782 1.3126 -0.0015 8 6 7.7967 1.1252 -0.0016 9 6 8.4795 2.4944 -0.0021 10 6 9.9751 2.3099 -0.0016 11 1 10.3966 1.3155 -0.0014 12 6 10.8056 3.4106 -0.0025 13 7 10.2924 4.6215 -0.0032 14 14 12.6595 3.1818 -0.0025 15 1 12.9793 1.7316 -0.0022 16 1 13.2363 3.8151 -1.2156 17 1 13.2367 3.8167 1.2095 18 6 3.5904 -1.1961 -0.0010 19 6 4.3306 -2.4709 -0.0011 20 8 5.5457 -2.4679 -0.0016 21 8 3.6597 -3.6396 -0.0007 22 6 2.1927 -1.1949 -0.0005 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3633 0.8901 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6507 2.1338 0.0004 27 1 4.1072 2.1564 0.0098 28 1 5.9809 1.8668 0.8888 29 1 5.9801 1.8673 -0.8912 30 1 8.0944 0.5707 0.8884 31 1 8.0943 0.5709 -0.8916 32 1 8.1817 3.0486 -0.8922 33 1 8.1819 3.0492 0.8877 34 1 10.8766 5.3958 -0.0035 35 1 4.1884 -4.4492 -0.0004 36 1 1.6510 -2.1292 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042220359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:02 Heat of formation + Delta-G solvation = -146.553808 kcal Electronic energy + Delta-G solvation = -19032.723813 eV Core-core repulsion = 15866.569378 eV Total energy + Delta-G solvation = -3166.154435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.75011 -40.43797 -38.85607 -36.99140 -36.03492 -33.91406 -32.83587 -32.40989 -29.06821 -27.17325 -25.72516 -25.38614 -23.23731 -21.89674 -21.51357 -19.33272 -18.96494 -18.50768 -17.58384 -17.35318 -16.88367 -16.53894 -16.51741 -15.49700 -15.30619 -15.08551 -14.77794 -14.35157 -14.26698 -14.17849 -13.66809 -13.19395 -12.94404 -12.80552 -12.78573 -12.56050 -12.52265 -12.38422 -12.09078 -12.04997 -11.59508 -11.47229 -11.44508 -11.25911 -10.59352 -10.18532 -9.14536 -8.24592 -6.35196 -0.32221 0.32728 1.38827 1.38940 1.52934 1.55358 2.05733 2.12645 2.40556 2.68857 3.08942 3.69436 3.78877 3.98637 3.98872 4.04658 4.19337 4.32051 4.40543 4.52010 4.70501 4.76946 4.85997 4.94606 4.96468 5.02673 5.06868 5.24679 5.29097 5.44600 5.54188 5.61112 5.62346 5.76179 5.77759 6.17362 6.34268 6.79192 7.03018 7.33798 8.87546 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.028591 B = 0.003699 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.090782 B = 7568.234740 C = 8516.272670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.141 4.141 3 C -0.034 4.034 4 C -0.229 4.229 5 C 0.161 3.839 6 O -0.310 6.310 7 C 0.065 3.935 8 C -0.095 4.095 9 C 0.032 3.968 10 C -0.548 4.548 11 H 0.055 0.945 12 C 0.003 3.997 13 N -0.929 5.929 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.275 1.275 18 C -0.191 4.191 19 C 0.525 3.475 20 O -0.540 6.540 21 O -0.503 6.503 22 C -0.020 4.020 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.163 0.837 27 H 0.143 0.857 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.003 0.997 33 H 0.003 0.997 34 H 0.266 0.734 35 H 0.430 0.570 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.017 -10.809 0.018 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.142 4.142 3 C -0.052 4.052 4 C -0.247 4.247 5 C 0.113 3.887 6 O -0.223 6.223 7 C -0.009 4.009 8 C -0.133 4.133 9 C -0.005 4.005 10 C -0.586 4.586 11 H 0.074 0.926 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.200 1.200 18 C -0.193 4.193 19 C 0.370 3.630 20 O -0.431 6.431 21 O -0.317 6.317 22 C -0.038 4.038 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.180 0.820 27 H 0.161 0.839 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.292 0.708 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -22.726 -10.449 0.016 25.013 hybrid contribution 1.799 -0.154 0.006 1.806 sum -20.927 -10.603 0.022 23.459 Atomic orbital electron populations 1.20780 0.87735 1.04170 1.03430 1.20198 0.98440 0.91846 1.03682 1.21516 0.92274 0.99735 0.91665 1.21500 0.96532 0.96607 1.10104 1.19506 0.82965 0.94041 0.92167 1.86283 1.16501 1.32980 1.86492 1.23014 0.93277 0.82670 1.01978 1.21411 0.91289 0.99268 1.01357 1.18897 0.94469 0.91347 0.95832 1.21640 0.92848 0.92953 1.51124 0.92648 1.25935 1.04262 0.94802 0.94485 1.70074 1.37030 0.98454 1.51315 0.85382 0.79015 0.78530 0.78034 1.19084 1.20028 1.20014 1.18594 0.94434 0.87753 1.18540 1.20811 0.85177 0.84973 0.72003 1.90976 1.16595 1.88368 1.47209 1.84474 1.44780 1.16791 1.85697 1.21423 0.89952 1.00260 0.92198 0.90151 0.90170 0.90303 0.81974 0.83906 0.91046 0.91045 0.92950 0.92960 0.97845 0.97846 0.92535 0.70821 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.00 71.24 0.71 -0.20 16 2 C -0.14 -2.29 5.87 -19.90 -0.12 -2.41 16 3 C -0.03 -0.61 9.68 22.30 0.22 -0.40 16 4 C -0.23 -5.73 9.03 22.34 0.20 -5.53 16 5 C 0.16 5.08 6.70 22.86 0.15 5.23 16 6 O -0.31 -12.03 8.21 -68.59 -0.56 -12.60 16 7 C 0.07 2.45 4.74 71.98 0.34 2.79 16 8 C -0.10 -4.36 5.52 30.60 0.17 -4.19 16 9 C 0.03 1.71 4.97 29.85 0.15 1.85 16 10 C -0.55 -32.27 9.11 25.60 0.23 -32.03 16 11 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 12 C 0.00 0.20 5.46 84.66 0.46 0.66 16 13 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 14 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 C -0.19 -5.33 5.89 -20.02 -0.12 -5.45 16 19 C 0.52 15.43 8.26 70.24 0.58 16.02 16 20 O -0.54 -20.96 15.95 26.81 0.43 -20.54 16 21 O -0.50 -9.62 12.68 -56.64 -0.72 -10.34 16 22 C -0.02 -0.40 9.25 22.53 0.21 -0.19 16 23 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 24 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 25 H 0.08 0.53 8.08 -2.38 -0.02 0.51 16 26 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 27 H 0.14 3.43 6.30 -2.91 -0.02 3.41 16 28 H 0.07 2.48 7.65 -2.39 -0.02 2.46 16 29 H 0.07 2.48 7.67 -2.39 -0.02 2.47 16 30 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.43 4.50 9.11 -74.06 -0.67 3.83 16 36 H 0.16 2.31 7.61 -2.91 -0.02 2.29 16 Total: -1.00 -75.66 314.80 5.07 -70.60 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.42 Total: 5.67 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 3.19 Total: -23.84 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.14 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -0.85 Total: -43.47 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.66 5.07 -70.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042220359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.955 kcal (2) G-P(sol) polarization free energy of solvation -75.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds