Wall clock time and date at job start Mon Mar 30 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38292 * 119.87534 * 2 1 4 4 C 1.37948 * 120.21033 * 180.25306 * 3 2 1 5 5 C 1.39657 * 119.96292 * 359.74856 * 4 3 2 6 6 C 1.47736 * 120.12273 * 179.97438 * 5 4 3 7 7 O 1.21469 * 119.99814 * 180.02562 * 6 5 4 8 8 O 1.34710 * 120.00569 * 0.02562 * 6 5 4 9 9 C 1.39537 * 119.74929 * 359.97438 * 5 4 3 10 10 C 1.38486 * 119.79110 * 359.97438 * 9 5 4 11 11 O 1.35913 * 119.98242 * 179.97438 * 10 9 5 12 12 C 1.42903 * 116.99828 * 0.02562 * 11 10 9 13 13 C 1.53000 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.46886 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47291 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99920 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46678 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47258 * 119.99423 * 19 17 15 22 22 H 1.48493 * 109.47346 * 240.00028 * 19 17 15 23 23 H 1.08997 * 109.47225 * 270.25686 * 1 2 3 24 24 H 1.09000 * 109.46529 * 30.25366 * 1 2 3 25 25 H 1.08995 * 109.46768 * 150.25334 * 1 2 3 26 26 H 1.08000 * 119.89846 * 0.02562 * 3 2 1 27 27 H 1.08004 * 120.01888 * 179.72551 * 4 3 2 28 28 H 0.96695 * 117.00387 * 180.02562 * 8 6 5 29 29 H 1.07998 * 120.10458 * 180.02562 * 9 5 4 30 30 H 1.09002 * 109.47382 * 59.99787 * 12 11 10 31 31 H 1.09001 * 109.46938 * 299.99773 * 12 11 10 32 32 H 1.09001 * 109.47194 * 299.99575 * 13 12 11 33 33 H 1.08992 * 109.47399 * 59.99748 * 13 12 11 34 34 H 1.09001 * 109.47109 * 299.99380 * 14 13 12 35 35 H 1.09002 * 109.47508 * 59.99571 * 14 13 12 36 36 H 0.97000 * 119.99425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1991 0.0000 4 6 3.5754 1.2072 -0.0053 5 6 4.2800 0.0014 -0.0053 6 6 5.7573 0.0059 -0.0115 7 8 6.3678 -1.0442 -0.0120 8 8 6.4274 1.1745 -0.0166 9 6 3.5833 -1.2076 0.0005 10 6 2.1985 -1.2037 0.0069 11 8 1.5159 -2.3790 0.0120 12 6 2.2913 -3.5794 0.0111 13 6 1.3562 -4.7904 0.0168 14 6 2.1863 -6.0757 0.0165 15 6 1.2653 -7.2685 0.0227 16 1 0.1950 -7.1243 0.0269 17 6 1.7891 -8.5439 0.0230 18 7 3.0925 -8.7194 0.0174 19 14 0.6475 -10.0225 0.0300 20 1 -0.7632 -9.5585 0.0351 21 1 0.8944 -10.8442 -1.1820 22 1 0.9036 -10.8399 1.2429 23 1 -0.3633 0.0046 1.0276 24 1 -0.3632 0.8877 -0.5178 25 1 -0.3633 -0.8922 -0.5099 26 1 1.6522 2.1323 0.0004 27 1 4.1102 2.1455 -0.0097 28 1 7.3931 1.1269 -0.0210 29 1 4.1224 -2.1434 0.0009 30 1 2.9238 -3.6041 0.8985 31 1 2.9163 -3.6076 -0.8814 32 1 0.7309 -4.7625 0.9092 33 1 0.7240 -4.7655 -0.8707 34 1 2.8119 -6.1039 -0.8757 35 1 2.8182 -6.1004 0.9043 36 1 3.4609 -9.6167 0.0172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042226963.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:55 Heat of formation + Delta-G solvation = -148.185326 kcal Electronic energy + Delta-G solvation = -18902.442943 eV Core-core repulsion = 15736.217760 eV Total energy + Delta-G solvation = -3166.225183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.73173 -40.78083 -38.56978 -37.16729 -36.00863 -34.14759 -33.52935 -31.15883 -28.95119 -28.62492 -25.66370 -24.32324 -23.22011 -22.52010 -21.51301 -19.66595 -18.77349 -18.53296 -17.31759 -17.17217 -16.96136 -16.71766 -16.47648 -16.33510 -15.23408 -15.00524 -14.75708 -14.36899 -14.20281 -14.13413 -13.68489 -13.19240 -13.12155 -12.86268 -12.76443 -12.64501 -12.50419 -12.32082 -12.25319 -12.13990 -11.71331 -11.56650 -11.53897 -11.25493 -10.59861 -9.99638 -9.26180 -8.23646 -6.35416 -0.45397 0.32043 1.40130 1.40458 1.43484 1.54244 1.93090 2.14562 2.41398 2.66292 3.10262 3.68462 3.79276 3.95370 3.97120 4.01415 4.11001 4.29560 4.38378 4.45597 4.71550 4.76338 4.77271 4.85920 4.88219 5.05942 5.18198 5.19978 5.28365 5.41459 5.45136 5.50259 5.61463 5.70610 5.78037 6.15894 6.31178 6.80582 6.89632 7.34352 8.88853 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023624 B = 0.003749 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.926895 B = 7467.188480 C = 8621.060334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.083 4.083 3 C -0.089 4.089 4 C -0.082 4.082 5 C -0.117 4.117 6 C 0.532 3.468 7 O -0.554 6.554 8 O -0.495 6.495 9 C -0.164 4.164 10 C 0.097 3.903 11 O -0.316 6.316 12 C 0.070 3.930 13 C -0.092 4.092 14 C 0.026 3.974 15 C -0.544 4.544 16 H 0.064 0.936 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.970 3.030 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.081 0.919 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.181 0.819 27 H 0.169 0.831 28 H 0.434 0.566 29 H 0.121 0.879 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.064 0.936 34 H -0.004 1.004 35 H -0.004 1.004 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 25.359 -0.046 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.084 4.084 3 C -0.106 4.106 4 C -0.100 4.100 5 C -0.118 4.118 6 C 0.378 3.622 7 O -0.447 6.447 8 O -0.309 6.309 9 C -0.183 4.183 10 C 0.051 3.949 11 O -0.230 6.230 12 C -0.005 4.005 13 C -0.130 4.130 14 C -0.011 4.011 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.794 3.206 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.100 0.900 24 H 0.117 0.883 25 H 0.077 0.923 26 H 0.198 0.802 27 H 0.186 0.814 28 H 0.296 0.704 29 H 0.139 0.861 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.014 0.986 35 H 0.014 0.986 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.075 24.945 -0.046 24.969 hybrid contribution 1.090 -1.630 0.007 1.961 sum 0.016 23.315 -0.039 23.315 Atomic orbital electron populations 1.20776 0.88509 1.03907 1.03485 1.20024 0.98292 0.89909 1.00177 1.21338 0.93482 0.97780 0.98011 1.21662 0.94640 0.97121 0.96621 1.18873 0.89004 0.94824 1.09147 1.20963 0.89055 0.81098 0.71099 1.90916 1.70838 1.34853 1.48048 1.84478 1.28692 1.32744 1.84979 1.21342 0.93566 0.98879 1.04525 1.19045 0.89866 0.87054 0.98897 1.86063 1.36060 1.12402 1.88500 1.22863 0.94519 0.82183 1.00922 1.21403 0.97922 0.91416 1.02247 1.18936 0.94981 0.91851 0.95363 1.21652 0.93770 0.91863 1.50848 0.91770 1.26020 0.96733 1.02610 0.94529 1.70114 1.12798 1.22998 1.51493 0.85328 0.79143 0.78343 0.77815 1.18370 1.20308 1.20313 0.90002 0.88310 0.92283 0.80208 0.81392 0.70360 0.86126 0.92495 0.92525 0.91766 0.91768 0.98563 0.98562 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 9.78 71.24 0.70 -1.21 16 2 C -0.08 -1.80 5.90 -19.71 -0.12 -1.91 16 3 C -0.09 -1.35 9.67 22.21 0.21 -1.14 16 4 C -0.08 -1.41 9.61 22.54 0.22 -1.19 16 5 C -0.12 -2.92 5.87 -20.11 -0.12 -3.04 16 6 C 0.53 13.27 8.27 70.33 0.58 13.85 16 7 O -0.55 -18.54 17.13 19.94 0.34 -18.20 16 8 O -0.50 -7.49 12.68 -56.20 -0.71 -8.20 16 9 C -0.16 -4.98 8.58 22.64 0.19 -4.78 16 10 C 0.10 2.83 6.65 22.47 0.15 2.98 16 11 O -0.32 -10.71 9.16 -92.57 -0.85 -11.56 16 12 C 0.07 2.63 4.74 71.98 0.34 2.97 16 13 C -0.09 -3.96 5.52 30.59 0.17 -3.79 16 14 C 0.03 1.40 4.97 29.85 0.15 1.54 16 15 C -0.54 -31.38 9.11 25.60 0.23 -31.14 16 16 H 0.06 3.54 7.74 -2.91 -0.02 3.51 16 17 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 18 N -0.93 -57.70 13.29 21.45 0.28 -57.42 16 19 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.10 1.07 8.08 -2.39 -0.02 1.05 16 25 H 0.06 1.26 7.52 -2.39 -0.02 1.24 16 26 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 27 H 0.17 1.84 7.61 -2.91 -0.02 1.82 16 28 H 0.43 2.73 9.11 -74.06 -0.67 2.06 16 29 H 0.12 4.18 5.88 -2.91 -0.02 4.16 16 30 H 0.06 2.14 7.66 -2.39 -0.02 2.12 16 31 H 0.06 2.13 7.66 -2.39 -0.02 2.11 16 32 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -74.08 315.60 4.68 -69.40 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 0.42 Total: 5.77 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.17 Total: -26.46 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.28 Total: -57.42 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.22 Total: -37.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -74.08 4.68 -69.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042226963.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.785 kcal (2) G-P(sol) polarization free energy of solvation -74.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds