Wall clock time and date at job start Mon Mar 30 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.68660 * 2 1 4 4 C 1.53405 * 109.68257 * 239.43432 * 2 1 3 5 5 C 1.52771 * 108.56304 * 304.70672 * 4 2 1 6 6 H 1.09001 * 108.92167 * 71.99661 * 5 4 2 7 7 O 1.42895 * 109.84984 * 191.80063 * 5 4 2 8 8 C 1.50798 * 109.79137 * 312.18922 * 5 4 2 9 9 C 1.38595 * 118.69716 * 197.16345 * 8 5 4 10 10 C 1.37950 * 120.40888 * 180.47912 * 9 8 5 11 11 C 1.38938 * 119.91933 * 359.96569 * 10 9 8 12 12 O 1.35741 * 120.09991 * 179.97438 * 11 10 9 13 13 C 1.34829 * 117.00112 * 354.44794 * 12 11 10 14 14 H 1.08005 * 119.99862 * 5.04898 * 13 12 11 15 15 C 1.38654 * 120.00498 * 185.05155 * 13 12 11 16 16 N 1.31562 * 119.99435 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00384 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47280 * 59.99880 * 17 15 13 19 19 H 1.48501 * 109.47681 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47181 * 300.00030 * 17 15 13 21 21 C 1.38612 * 119.80511 * 359.90354 * 11 10 9 22 22 C 1.38461 * 121.36749 * 17.66216 * 8 5 4 23 23 O 1.35857 * 121.78997 * 359.17090 * 22 8 5 24 24 H 1.09002 * 109.47012 * 299.48061 * 1 2 3 25 25 H 1.09005 * 109.46672 * 59.47045 * 1 2 3 26 26 H 1.08994 * 109.47639 * 179.47296 * 1 2 3 27 27 H 1.09001 * 109.47231 * 180.52050 * 3 2 1 28 28 H 1.09001 * 109.47023 * 300.52211 * 3 2 1 29 29 H 1.09003 * 109.46913 * 60.52353 * 3 2 1 30 30 H 1.09009 * 109.68985 * 64.69470 * 4 2 1 31 31 H 1.09000 * 109.69890 * 185.23686 * 4 2 1 32 32 H 0.96701 * 113.99975 * 180.60411 * 7 5 4 33 33 H 1.07999 * 119.79324 * 0.46604 * 9 8 5 34 34 H 1.08007 * 120.04388 * 179.97438 * 10 9 8 35 35 H 0.97004 * 119.99229 * 180.02562 * 16 15 13 36 36 H 1.07999 * 119.91597 * 179.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0454 1.4405 0.0000 4 6 2.0467 -0.7345 -1.2437 5 6 1.4341 -2.1338 -1.2717 6 1 0.3771 -2.0519 -1.5253 7 8 2.0969 -2.9341 -2.2526 8 6 1.5762 -2.7806 0.0831 9 6 1.4212 -4.1541 0.1843 10 6 1.5341 -4.7812 1.4078 11 6 1.8054 -4.0339 2.5472 12 8 1.9167 -4.6471 3.7531 13 6 1.6398 -5.9659 3.7970 14 1 1.4246 -6.5032 2.8851 15 6 1.6312 -6.6325 5.0128 16 7 1.8938 -5.9781 6.1235 17 14 1.2484 -8.4598 5.0735 18 1 2.2481 -9.2022 4.2644 19 1 1.3032 -8.9306 6.4808 20 1 -0.1101 -8.6995 4.5235 21 6 1.9636 -2.6603 2.4487 22 6 1.8457 -2.0304 1.2152 23 8 2.0110 -0.6831 1.1584 24 1 -0.3633 0.5058 0.8946 25 1 -0.3633 0.5221 -0.8853 26 1 -0.3634 -1.0275 -0.0095 27 1 3.1353 1.4365 -0.0093 28 1 1.6763 1.9584 -0.8853 29 1 1.6916 1.9530 0.8947 30 1 1.7573 -0.1866 -2.1406 31 1 3.1326 -0.8161 -1.1976 32 1 1.7486 -3.8331 -2.3273 33 1 1.2106 -4.7370 -0.7002 34 1 1.4118 -5.8519 1.4800 35 1 1.8882 -6.4445 6.9740 36 1 2.1741 -2.0776 3.3333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043460703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:43 Heat of formation + Delta-G solvation = -95.232114 kcal Electronic energy + Delta-G solvation = -20165.525307 eV Core-core repulsion = 17001.596348 eV Total energy + Delta-G solvation = -3163.928959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68841 -38.54211 -36.95155 -35.80200 -33.69037 -32.34078 -30.46399 -29.61909 -27.62950 -27.28226 -25.45130 -23.04889 -22.22339 -21.72476 -19.24608 -18.00302 -17.64242 -16.73219 -16.16716 -15.61084 -15.26936 -14.81417 -14.34897 -14.22952 -13.84949 -13.68897 -13.36879 -13.02420 -12.86085 -12.54179 -12.27294 -12.07940 -11.95268 -11.83173 -11.67639 -11.34152 -11.21204 -11.06317 -10.63084 -10.54047 -10.45464 -10.17761 -9.68826 -9.39475 -8.85989 -7.78851 -7.20836 -6.49528 -4.09176 2.14201 2.17981 3.10430 3.11622 3.14880 3.44762 3.95774 4.13327 4.50502 4.69041 4.82149 5.00897 5.05528 5.11116 5.16740 5.30860 5.38233 5.47231 5.51524 5.62193 5.69163 5.76726 5.82601 5.98503 6.05058 6.12302 6.20057 6.24966 6.32217 6.79883 6.91669 6.96619 7.22663 7.30436 7.48127 7.71875 7.94973 8.05228 8.95205 9.63420 10.67964 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033357 B = 0.004919 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.192186 B = 5691.343779 C = 6286.555838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.167 3.833 6 H 0.054 0.946 7 O -0.564 6.564 8 C -0.289 4.289 9 C -0.037 4.037 10 C -0.254 4.254 11 C 0.186 3.814 12 O -0.170 6.170 13 C -0.394 4.394 14 H 0.093 0.907 15 C 0.041 3.959 16 N -0.859 5.859 17 Si 0.943 3.057 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.269 1.269 21 C -0.227 4.227 22 C 0.185 3.815 23 O -0.311 6.311 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.376 0.624 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.272 0.728 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 8.437 -13.109 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.080 3.920 3 C -0.194 4.194 4 C -0.176 4.176 5 C 0.109 3.891 6 H 0.072 0.928 7 O -0.371 6.371 8 C -0.291 4.291 9 C -0.055 4.055 10 C -0.273 4.273 11 C 0.131 3.869 12 O -0.072 6.072 13 C -0.470 4.470 14 H 0.111 0.889 15 C -0.164 4.164 16 N -0.493 5.493 17 Si 0.767 3.233 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.194 1.194 21 C -0.247 4.247 22 C 0.141 3.859 23 O -0.226 6.226 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.224 0.776 33 H 0.126 0.874 34 H 0.148 0.852 35 H 0.082 0.918 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.397 9.140 -12.549 15.709 hybrid contribution -0.605 -1.640 -0.053 1.749 sum -3.002 7.500 -12.602 14.969 Atomic orbital electron populations 1.22451 0.94731 1.03542 1.02787 1.21723 0.93777 0.92494 0.83960 1.21755 1.02217 0.92545 1.02842 1.22106 1.02553 0.94735 0.98200 1.20181 0.94516 0.89660 0.84768 0.92794 1.86448 1.63590 1.27887 1.59153 1.19805 1.19895 0.94949 0.94490 1.20278 0.96151 0.92590 0.96529 1.21036 1.13186 1.00824 0.92265 1.18904 0.90740 0.90883 0.86411 1.83970 1.74108 1.24395 1.24746 1.21316 1.49625 0.81051 0.95035 0.88926 1.25320 0.96498 1.00544 0.94070 1.70040 1.44294 1.36807 0.98202 0.85753 0.79265 0.80294 0.77958 1.19430 1.20214 1.19444 1.19393 1.17077 0.92281 0.95907 1.17983 0.94408 0.81204 0.92354 1.85991 1.76894 1.17673 1.42024 0.91392 0.91281 0.91291 0.91483 0.90656 0.91260 0.90115 0.89946 0.77586 0.87438 0.85216 0.91838 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.17 37.16 0.30 -1.82 16 2 C 0.12 1.58 1.13 -90.41 -0.10 1.48 16 3 C -0.14 -1.40 8.88 37.16 0.33 -1.07 16 4 C -0.14 -1.84 4.74 -26.64 -0.13 -1.97 16 5 C 0.17 2.45 2.97 -27.95 -0.08 2.36 16 6 H 0.05 0.72 6.98 -51.93 -0.36 0.35 16 7 O -0.56 -8.07 13.19 -35.23 -0.46 -8.54 16 8 C -0.29 -5.21 5.02 -104.36 -0.52 -5.74 16 9 C -0.04 -0.67 9.25 -39.56 -0.37 -1.04 16 10 C -0.25 -5.49 9.16 -39.43 -0.36 -5.85 16 11 C 0.19 4.56 6.64 -39.18 -0.26 4.30 16 12 O -0.17 -4.86 9.76 0.08 0.00 -4.86 16 13 C -0.39 -10.93 9.49 30.89 0.29 -10.63 16 14 H 0.09 2.35 5.21 -52.48 -0.27 2.08 16 15 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 16 N -0.86 -25.05 13.67 55.48 0.76 -24.29 16 17 Si 0.94 20.24 29.55 -169.99 -5.02 15.22 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 C -0.23 -5.13 9.88 -39.16 -0.39 -5.52 16 22 C 0.19 3.68 6.02 -39.21 -0.24 3.44 16 23 O -0.31 -5.52 9.67 -19.29 -0.19 -5.71 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.93 5.87 -51.93 -0.30 0.62 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.38 4.11 7.47 45.56 0.34 4.45 16 33 H 0.11 1.54 6.73 -52.49 -0.35 1.19 16 34 H 0.13 2.76 5.65 -52.48 -0.30 2.46 16 35 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 295.28 15.07 4.45 4.45 Total: -1.00 -31.71 295.28 -5.85 -37.55 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -3.77 Total: 7.21 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -1.62 Total: -21.04 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.76 Total: -24.29 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.65 Total: -19.10 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.71 -5.85 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043460703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.678 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds