Wall clock time and date at job start Mon Mar 30 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.68660 * 2 1 4 4 C 1.53405 * 109.68257 * 239.43432 * 2 1 3 5 5 C 1.52771 * 108.56304 * 304.70672 * 4 2 1 6 6 H 1.09001 * 108.92167 * 71.99661 * 5 4 2 7 7 O 1.42895 * 109.84984 * 191.80063 * 5 4 2 8 8 C 1.50798 * 109.79137 * 312.18922 * 5 4 2 9 9 C 1.38595 * 118.69716 * 197.16345 * 8 5 4 10 10 C 1.37950 * 120.40888 * 180.47912 * 9 8 5 11 11 C 1.38938 * 119.91933 * 359.96569 * 10 9 8 12 12 O 1.35741 * 120.09991 * 179.97438 * 11 10 9 13 13 C 1.34829 * 117.00112 * 354.44794 * 12 11 10 14 14 H 1.08005 * 119.99862 * 5.04898 * 13 12 11 15 15 C 1.38654 * 120.00498 * 185.05155 * 13 12 11 16 16 N 1.31562 * 119.99435 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00384 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47280 * 59.99880 * 17 15 13 19 19 H 1.48501 * 109.47681 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47181 * 300.00030 * 17 15 13 21 21 C 1.38612 * 119.80511 * 359.90354 * 11 10 9 22 22 C 1.38461 * 121.36749 * 17.66216 * 8 5 4 23 23 O 1.35857 * 121.78997 * 359.17090 * 22 8 5 24 24 H 1.09002 * 109.47012 * 299.48061 * 1 2 3 25 25 H 1.09005 * 109.46672 * 59.47045 * 1 2 3 26 26 H 1.08994 * 109.47639 * 179.47296 * 1 2 3 27 27 H 1.09001 * 109.47231 * 180.52050 * 3 2 1 28 28 H 1.09001 * 109.47023 * 300.52211 * 3 2 1 29 29 H 1.09003 * 109.46913 * 60.52353 * 3 2 1 30 30 H 1.09009 * 109.68985 * 64.69470 * 4 2 1 31 31 H 1.09000 * 109.69890 * 185.23686 * 4 2 1 32 32 H 0.96701 * 113.99975 * 180.60411 * 7 5 4 33 33 H 1.07999 * 119.79324 * 0.46604 * 9 8 5 34 34 H 1.08007 * 120.04388 * 179.97438 * 10 9 8 35 35 H 0.97004 * 119.99229 * 180.02562 * 16 15 13 36 36 H 1.07999 * 119.91597 * 179.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0454 1.4405 0.0000 4 6 2.0467 -0.7345 -1.2437 5 6 1.4341 -2.1338 -1.2717 6 1 0.3771 -2.0519 -1.5253 7 8 2.0969 -2.9341 -2.2526 8 6 1.5762 -2.7806 0.0831 9 6 1.4212 -4.1541 0.1843 10 6 1.5341 -4.7812 1.4078 11 6 1.8054 -4.0339 2.5472 12 8 1.9167 -4.6471 3.7531 13 6 1.6398 -5.9659 3.7970 14 1 1.4246 -6.5032 2.8851 15 6 1.6312 -6.6325 5.0128 16 7 1.8938 -5.9781 6.1235 17 14 1.2484 -8.4598 5.0735 18 1 2.2481 -9.2022 4.2644 19 1 1.3032 -8.9306 6.4808 20 1 -0.1101 -8.6995 4.5235 21 6 1.9636 -2.6603 2.4487 22 6 1.8457 -2.0304 1.2152 23 8 2.0110 -0.6831 1.1584 24 1 -0.3633 0.5058 0.8946 25 1 -0.3633 0.5221 -0.8853 26 1 -0.3634 -1.0275 -0.0095 27 1 3.1353 1.4365 -0.0093 28 1 1.6763 1.9584 -0.8853 29 1 1.6916 1.9530 0.8947 30 1 1.7573 -0.1866 -2.1406 31 1 3.1326 -0.8161 -1.1976 32 1 1.7486 -3.8331 -2.3273 33 1 1.2106 -4.7370 -0.7002 34 1 1.4118 -5.8519 1.4800 35 1 1.8882 -6.4445 6.9740 36 1 2.1741 -2.0776 3.3333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043460703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:43 Heat of formation + Delta-G solvation = -118.295479 kcal Electronic energy + Delta-G solvation = -20166.525410 eV Core-core repulsion = 17001.596348 eV Total energy + Delta-G solvation = -3164.929062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.06049 -40.29680 -38.21741 -37.34250 -34.90255 -34.30364 -31.78025 -31.25987 -28.87179 -28.28355 -27.41390 -24.41538 -23.67443 -23.19674 -20.86721 -19.33455 -19.31514 -18.23530 -17.47637 -17.05242 -16.75449 -16.23111 -15.99135 -15.63504 -15.51823 -15.13816 -14.78391 -14.52462 -14.18630 -13.69729 -13.56826 -13.46881 -13.09077 -13.02161 -12.91560 -12.76624 -12.73701 -12.43825 -12.16798 -11.94136 -11.68473 -11.49574 -11.25633 -10.91567 -10.74246 -9.46960 -8.88356 -8.49472 -6.19420 0.48799 0.54297 1.35420 1.46656 1.52565 2.05392 2.27373 2.69224 3.05879 3.25038 3.51529 3.66913 3.77030 3.81136 3.90088 4.11699 4.19856 4.22591 4.42316 4.46952 4.64966 4.69849 4.78070 4.83423 4.85913 4.88260 5.00580 5.07103 5.14492 5.18518 5.30646 5.37978 5.51710 5.59999 5.85645 5.98564 6.58966 6.78537 6.94058 7.71637 8.73374 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033357 B = 0.004919 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.192186 B = 5691.343779 C = 6286.555838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 C -0.134 4.134 4 C -0.137 4.137 5 C 0.168 3.832 6 H 0.083 0.917 7 O -0.570 6.570 8 C -0.273 4.273 9 C -0.027 4.027 10 C -0.265 4.265 11 C 0.153 3.847 12 O -0.226 6.226 13 C -0.418 4.418 14 H 0.108 0.892 15 C -0.022 4.022 16 N -0.920 5.920 17 Si 1.023 2.977 18 H -0.256 1.256 19 H -0.273 1.273 20 H -0.255 1.255 21 C -0.252 4.252 22 C 0.189 3.811 23 O -0.328 6.328 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.392 0.608 33 H 0.158 0.842 34 H 0.130 0.870 35 H 0.274 0.726 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.025 8.819 -17.157 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.068 3.932 3 C -0.191 4.191 4 C -0.175 4.175 5 C 0.110 3.890 6 H 0.100 0.900 7 O -0.378 6.378 8 C -0.275 4.275 9 C -0.045 4.045 10 C -0.285 4.285 11 C 0.101 3.899 12 O -0.132 6.132 13 C -0.493 4.493 14 H 0.125 0.875 15 C -0.220 4.220 16 N -0.558 5.558 17 Si 0.841 3.159 18 H -0.180 1.180 19 H -0.197 1.197 20 H -0.179 1.179 21 C -0.273 4.273 22 C 0.143 3.857 23 O -0.243 6.243 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.084 0.916 32 H 0.242 0.758 33 H 0.175 0.825 34 H 0.148 0.852 35 H 0.083 0.917 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.516 9.558 -16.662 19.528 hybrid contribution -0.252 -1.444 0.912 1.726 sum -3.767 8.113 -15.751 18.113 Atomic orbital electron populations 1.22465 0.93379 1.02972 1.04476 1.22272 0.94977 0.93529 0.82447 1.21830 1.02055 0.90620 1.04570 1.22155 1.01454 0.94381 0.99461 1.20322 0.96349 0.90005 0.82369 0.89969 1.86450 1.63951 1.29130 1.58315 1.20437 1.16122 0.95006 0.95939 1.20786 0.93847 0.93107 0.96780 1.21173 1.13714 1.00856 0.92707 1.19370 0.92115 0.91809 0.86562 1.83939 1.77035 1.25153 1.27051 1.21882 1.50025 0.81326 0.96090 0.87510 1.26687 0.95946 1.06114 0.93239 1.70201 1.47225 1.39294 0.99037 0.84594 0.79795 0.73174 0.78304 1.17982 1.19717 1.17882 1.19527 1.18625 0.92042 0.97057 1.18028 0.93258 0.82585 0.91796 1.85991 1.76994 1.16491 1.44873 0.91848 0.87527 0.92940 0.91902 0.87057 0.91361 0.86427 0.91592 0.75762 0.82457 0.85219 0.91717 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 8.17 71.98 0.59 -3.00 16 2 C 0.10 2.48 1.13 -10.66 -0.01 2.47 16 3 C -0.13 -2.31 8.88 71.98 0.64 -1.67 16 4 C -0.14 -3.07 4.74 30.65 0.15 -2.93 16 5 C 0.17 4.17 2.97 29.80 0.09 4.26 16 6 H 0.08 1.69 6.98 -2.39 -0.02 1.68 16 7 O -0.57 -13.48 13.19 -148.98 -1.97 -15.45 16 8 C -0.27 -9.20 5.02 -19.69 -0.10 -9.30 16 9 C -0.03 -0.93 9.25 22.29 0.21 -0.72 16 10 C -0.27 -11.57 9.16 22.37 0.21 -11.36 16 11 C 0.15 7.96 6.64 22.53 0.15 8.11 16 12 O -0.23 -13.95 9.76 -22.63 -0.22 -14.17 16 13 C -0.42 -24.38 9.49 67.92 0.64 -23.73 16 14 H 0.11 5.61 5.21 -2.91 -0.02 5.60 16 15 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 16 N -0.92 -56.92 13.67 21.61 0.30 -56.63 16 17 Si 1.02 42.44 29.55 68.60 2.03 44.47 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 20 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 21 C -0.25 -12.13 9.88 22.54 0.22 -11.91 16 22 C 0.19 7.50 6.02 22.51 0.14 7.63 16 23 O -0.33 -11.47 9.67 -91.95 -0.89 -12.36 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.05 1.24 5.87 -2.39 -0.01 1.23 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.39 6.42 7.47 -74.06 -0.55 5.87 16 33 H 0.16 3.73 6.73 -2.91 -0.02 3.71 16 34 H 0.13 5.56 5.65 -2.91 -0.02 5.54 16 35 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 36 H 0.11 5.33 8.06 -2.91 -0.02 5.31 16 Total: -1.00 -75.50 295.28 3.18 -72.32 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.56 Total: 24.75 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 3.38 Total: -42.93 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.30 Total: -56.63 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -3.08 Total: -41.98 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -75.50 3.18 -72.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043460703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.978 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds